DTASelect v1.9 /wfs/bfd/3/scott/beth/tii4e /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YDR012W 14 23 46.4% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii4e06.1554.1554.2 3.3018 0.329 1981.56 1982.29 9447.2 1 647.7 44.1 1 F.SAPIRPDIVHTVFTSVNK.N bethtii4e05.0482.0482.2 2.8602 0.2881 1444.55 1445.491 8919.1 1 1282.6 65.4 1 K.AGHQTSAESWGTGR.A bethtii4e.2326.2326.3 3.8939 0.3285 1819.77 1821.127 8119.7 1 1283.2 41.7 1 R.YATASAIAATAVASLVLAR.G bethtii4e.2323.2323.2 4.2815 0.3637 1822.89 1821.127 9809.2 1 1745.2 61.1 3 R.YATASAIAATAVASLVLAR.G bethtii4e05.0894.0894.2 3.027 0.2135 1630.1 1630.885 6656.7 1 948.5 64.3 2 R.RGPLVVYAEDNGIVK.A bethtii4e06.1967.1967.2 4.3831 0.4012 2612.72 2612.992 6654.2 1 1043.5 48.0 2 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii4e05.2250.2250.2 3.6661 0.3533 2399.16 2399.756 9075.9 1 1052.4 45.7 2 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii4e05.2243.2243.3 3.9746 0.3772 2399.94 2399.756 7191.7 1 891.7 31.5 1 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii4e.1864.1864.2 3.1698 0.3999 1312.86 1313.539 7597.2 1 1541.7 80.0 2 R.FVIWTEAAFTK.L bethtii4e02.0744.0744.2 3.3107 0.2947 1506.8 1507.64 4561.0 1 730.7 65.4 1 K.LDQVWGSETVASSK.V bethtii4e03.0829.0829.2 3.198 0.3132 1846.36 1847.078 4267.3 1 673.1 62.5 1 K.VGYTLPSHIISTSDVTR.I bethtii4e04.0806.0806.2 4.6567 0.3996 2112.21 2113.379 7917.7 1 1367.3 63.2 4 R.IINSSEIQSAIRPAGQATQK.R bethtii4e04.0807.0807.3 4.3286 0.1261 2113.93 2113.379 4451.3 1 717.4 39.5 1 R.IINSSEIQSAIRPAGQATQK.R * bethtii4e05.0798.0798.2 3.2257 0.4173 1433.73 1434.676 3735.4 1 698.6 73.1 1 K.TGTKPAAVFAETLK.H NRL_1MCOH 9 65 26.6% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii4e.1334.1334.1 2.0826 0.1885 1186.29 1187.381 5968.3 1 606.2 59.1 1 K.GPSVFPLAPSSK.S * bethtii4e.1335.1335.2 3.2304 0.1992 1189.91 1187.381 4454.1 1 686.0 68.2 2 K.GPSVFPLAPSSK.S * bethtii4e.1947.1947.2 2.5034 0.1726 2092.26 2093.344 7604.2 2 526.9 40.0 1 N.SGALTSGVHTFPAVLQSSGLY.S * bethtii4e02.0896.0896.2 3.1173 0.2855 1685.76 1686.779 9593.1 1 1173.4 57.1 1 R.TPEVTCVVVDVSHED.P * bethtii4e05.1034.1034.2 3.334 0.41 2138.52 2139.333 8317.3 1 1134.1 55.6 1 R.TPEVTCVVVDVSHEDPQVK.F * bethtii4e.1506.1506.2 4.8231 0.415 1679.8 1677.859 8658.2 1 2140.9 84.6 21 K.FNWYVDGVQVHNAK.T * bethtii4e.2202.2202.2 4.6133 0.4853 1808.47 1809.119 8000.2 1 1653.0 70.0 35 R.VVSVLTVLHQNWLDGK.E * bethtii4e.1022.1022.2 2.9321 0.2363 1163.26 1162.338 5925.4 2 731.7 72.2 2 K.NQVSLTCLVK.G * bethtii4e02.1709.1709.2 2.9556 0.2823 2545.36 2545.681 7891.8 1 676.0 40.5 1 K.GFYPSDIAVEWESNGQPENNYK.T KERATIN02 9 16 24.8% 622 61987 5.2 U no description * bethtii4e.0210.0210.2 3.4551 0.3446 1232.68 1233.283 6268.8 1 1304.1 73.3 1 T.SGGGGGGGLGSGGSIR.S * bethtii4e.1607.1607.2 4.1579 0.558 2706.99 2706.761 9572.9 1 1023.5 35.5 2 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii4e.0655.0655.2 2.5987 0.2974 951.63 952.015 4351.5 1 713.6 75.0 1 S.SLGGGFGGGSR.G * bethtii4e02.0856.0856.2 2.713 0.4078 1761.32 1762.836 8066.1 1 1036.0 50.0 1 S.SLGGGFGGGSRGFGGASGGGY.S * bethtii4e06.1527.1527.2 2.9432 0.317 2377.61 2378.598 5214.6 1 324.6 42.5 1 R.LASYLDKVQALEEANNDLENK.I * bethtii4e05.2212.2212.3 4.1673 0.2878 3264.86 3266.413 7420.9 1 679.3 25.9 3 K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E * bethtii4e06.1663.1663.2 3.9992 0.2905 1837.73 1839.056 6613.0 1 782.6 60.0 5 R.HGVQELEIELQSQLSK.K * bethtii4e02.1584.1584.2 2.673 0.2628 2095.92 2096.308 7655.9 1 938.2 59.4 1 R.QEIECQNQEYSLLLSIK.M * bethtii4e04.0623.0623.2 2.5588 0.3334 1138.22 1138.225 7109.6 2 768.5 66.7 1 K.IGLGGRGGSGGSY.G ORFP:YCR031C 2 3 21.2% 137 14537 10.7 U RPS14A SGDID:S0000627, Chr III from 177492-177498,177806-178212, reverse complement ORFP:YJL191W 2 3 21.0% 138 14650 10.5 U RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610 bethtii4e06.1679.1679.2 4.6447 0.5863 2016.28 2015.23 7993.8 1 1944.1 70.6 1 R.IYASFNDTFVHVTDLSGK.E bethtii4e04.0470.0470.2 2.7767 0.4432 1024.6 1025.153 5627.8 1 677.4 80.0 2 K.TPGPGGQAALR.A KERATIN13 9 17 20.8% 643 65494 6.6 U no description * bethtii4e05.1644.1644.2 2.6614 0.3597 1638.83 1639.852 7522.1 1 1111.3 65.4 1 K.SLNNQFASFIDKVR.F * bethtii4e06.1775.1775.3 3.5103 0.136 2932.11 2934.279 10560.9 1 713.9 26.1 1 R.FLEQQNQVLQTKWELLQQVDTSTR.T * bethtii4e06.2111.2111.3 5.0194 0.326 1994.18 1995.202 9676.9 2 1711.4 45.0 6 R.THNLEPYFESFINNLR.R * bethtii4e.2034.2034.2 2.7828 0.2411 1995.64 1995.202 8790.3 2 403.0 43.3 1 R.THNLEPYFESFINNLR.R * bethtii4e.0178.0178.2 3.0733 0.3006 1393.45 1394.568 4720.6 1 625.5 72.7 1 R.TNAENEFVTIKK.D * bethtii4e06.1894.1894.3 3.6921 0.2992 2632.04 2631.86 9123.2 39 389.7 23.9 1 R.SEIDNVKKQISNLQQSISDAEQR.G * bethtii4e04.0739.0739.2 3.8608 0.4116 1845.05 1846.007 9290.6 1 1218.4 60.0 1 K.KQISNLQQSISDAEQR.G * bethtii4e.1818.1818.2 3.0909 0.2413 1599.65 1600.769 11906.9 1 1305.6 57.7 4 K.NKLNDLEDALQQAK.E * bethtii4e05.0538.0538.2 4.1767 0.2698 2385.01 2385.298 8849.2 1 930.1 38.3 1 R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G ORFP:YGL123W 3 7 18.9% 254 27450 10.4 U RPS2 SGDID:S0003091, Chr VII from 277618-278382 * bethtii4e.2314.2314.2 3.8489 0.4126 1740.55 1741.081 9154.5 1 1246.8 64.3 4 K.ITTIEEIFLHSLPVK.E * bethtii4e06.1339.1339.2 4.8672 0.4534 1732.34 1730.921 6522.6 1 1362.0 73.3 1 R.GYWGTNLGQPHSLATK.T * bethtii4e02.1209.1209.2 3.8552 0.3425 1836.02 1836.052 8120.7 1 1749.4 68.8 2 K.LLQLAGVEDVYTQSNGK.T KERATIN22 7 8 16.9% 645 65865 8.0 U no description * bethtii4e06.1211.1211.2 4.3355 0.5218 1321.25 1321.354 5710.0 1 1719.6 83.3 1 R.HGGGGGGFGGGGFGSR.S * bethtii4e.1579.1579.2 3.1316 0.4281 1839.46 1840.005 7608.4 1 714.3 42.9 2 K.SISISVAGGGGGFGAAGGFGGR.G * bethtii4e.1686.1686.3 5.3934 0.3077 2398.82 2400.445 7999.1 1 5724.8 50.0 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii4e.1687.1687.2 4.4485 0.3935 2399.75 2400.445 8771.1 1 2727.5 55.2 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii4e.1416.1416.2 2.6922 0.2159 1439.9 1440.683 6902.4 1 591.2 58.3 1 V.SVNQSLLQPLNVK.V * bethtii4e.1918.1918.2 3.004 0.1949 1818.73 1819.07 5535.1 1 575.8 53.3 1 M.NVGTRPINLEPIFQGY.I * bethtii4e04.0375.0375.2 2.7727 0.1957 1391.8 1392.508 9624.2 1 1349.9 72.7 1 R.SKEEAEALYHSK.Y ORFP:YGL008C 8 12 16.6% 918 99619 5.1 U PMA1 SGDID:S0002976, Chr VII from 479906-482662, reverse complement * bethtii4e02.1442.1442.2 2.868 0.0961 2481.4 2481.716 5206.0 1 590.0 47.6 1 R.PVPEEYLQTDPSYGLTSDEVLK.R * bethtii4e02.1222.1222.2 4.204 0.4813 1859.19 1859.064 8151.6 1 1546.5 67.6 1 R.GEGFMVVTATGDNTFVGR.A bethtii4e02.1898.1898.2 2.9792 0.2187 1805.19 1806.03 7341.7 1 735.9 50.0 2 K.LSAIESLAGVEILCSDK.T bethtii4e.1584.1584.2 3.0967 0.365 1414.8 1415.632 5173.4 1 888.7 77.3 4 K.VLEFHPFDPVSK.K bethtii4e02.0356.0356.2 3.2155 0.3593 1400.78 1401.56 8235.4 2 1188.8 70.8 1 K.KVTAVVESPEGER.I bethtii4e.2340.2340.3 4.6245 0.4543 3262.72 3263.562 6490.2 1 987.4 29.8 1 R.LGLGGGGDMPGSELADFVENADGFAEVFPQHK.Y bethtii4e02.1041.1041.2 3.4037 0.378 1808.55 1809.044 11600.8 1 1786.2 61.8 1 R.GYLVAMTGDGVNDAPSLK.K bethtii4e.0098.0098.2 2.6487 0.1462 1986.03 1986.359 5731.9 3 363.1 39.5 1 R.SAADIVFLAPGLSAIIDALK.T ORFP:YDR064W 2 2 15.2% 151 17029 10.4 U RPS13 SGDID:S0002471, Chr IV from 579453-579473,580013-580447 * bethtii4e06.1431.1431.2 2.8602 0.3283 1382.39 1382.69 5522.0 1 1194.4 79.2 1 R.KGLTPSQIGVLLR.D * bethtii4e.1312.1312.2 2.6023 0.1329 1124.64 1125.356 4484.7 2 535.5 72.2 1 R.TVAVLPPNWK.Y ORFP:YGR214W 2 2 15.1% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920570-920659,921115-921783 ORFP:YLR048W 2 2 15.1% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii4e06.1399.1399.3 4.5975 0.4372 2818.52 2818.167 8854.9 1 1007.3 30.2 1 R.NVQVHQEPYVFNARPDGVHVINVGK.T bethtii4e06.1163.1163.1 2.1027 0.3 1269.3 1270.434 3729.7 1 299.8 66.7 1 K.FAAHTGATPIAGR.F ORFP:YHL001W 2 2 13.8% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 2 2 13.8% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethtii4e.2450.2450.2 4.6473 0.5253 2050.89 2052.468 6844.0 1 865.9 58.3 1 R.QAINLGQVVLTPLTFALPR.G bethtii4e.2439.2439.3 4.6285 0.3054 2051.45 2052.468 9945.9 1 1729.7 40.3 1 R.QAINLGQVVLTPLTFALPR.G ORFP:YPL036W 7 11 13.7% 947 102172 5.0 U PMA2 SGDID:S0005957, Chr XVI from 482839-485682 * bethtii4e02.0973.0973.2 2.5927 0.1235 1875.59 1873.091 8970.2 1 893.8 50.0 1 T.GEAFMVVTATGDNTFVGR.A bethtii4e02.1898.1898.2 2.9792 0.2187 1805.19 1806.03 7341.7 1 735.9 50.0 2 K.LSAIESLAGVEILCSDK.T bethtii4e.1584.1584.2 3.0967 0.365 1414.8 1415.632 5173.4 1 888.7 77.3 4 K.VLEFHPFDPVSK.K bethtii4e02.0356.0356.2 3.2155 0.3593 1400.78 1401.56 8235.4 2 1188.8 70.8 1 K.KVTAVVESPEGER.I bethtii4e.2340.2340.3 4.6245 0.4543 3262.72 3263.562 6490.2 1 987.4 29.8 1 R.LGLGGGGDMPGSELADFVENADGFAEVFPQHK.Y bethtii4e02.1041.1041.2 3.4037 0.378 1808.55 1809.044 11600.8 1 1786.2 61.8 1 R.GYLVAMTGDGVNDAPSLK.K bethtii4e.0098.0098.2 2.6487 0.1462 1986.03 1986.359 5731.9 3 363.1 39.5 1 R.SAADIVFLAPGLSAIIDALK.T ORFP:YJR123W 3 3 12.9% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651594-652271 * bethtii4e06.1552.1552.2 3.349 0.4503 1497.11 1496.796 2941.7 3 207.9 57.7 1 R.RVNQAIALLTIGAR.E * bethtii4e.1758.1758.2 4.0884 0.3313 1339.83 1340.609 8982.6 1 2173.4 83.3 1 R.VNQAIALLTIGAR.E * bethtii4e.2275.2275.2 3.6053 0.2625 1586.61 1587.811 7497.6 1 1661.6 71.4 1 K.TIAETLAEELINAAK.G KERATIN03 6 11 12.1% 593 59519 5.2 U no description * bethtii4e04.2267.2267.3 5.2488 0.3565 2367.29 2368.652 8927.2 1 2878.3 48.8 3 K.NQILNLTTDNANILLQIDNAR.L * bethtii4e02.2309.2309.2 3.2004 0.235 2368.09 2368.652 10174.5 1 1487.7 55.0 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii4e02.0817.0817.2 2.5625 0.1774 1234.9 1235.426 4431.9 1 749.3 88.9 1 R.LKYENEVALR.Q * bethtii4e02.0194.0194.2 2.9436 0.2488 1998.94 1998.151 7731.9 1 486.1 46.9 1 K.ELTTEIDNNIEQISSYK.S * bethtii4e02.0740.0740.2 2.5886 0.1607 1390.25 1391.478 6345.9 1 674.2 66.7 1 K.QSLEASLAETEGR.Y * bethtii4e04.0986.0986.2 3.0984 0.2805 1434.48 1435.623 9443.4 1 1201.6 75.0 4 K.IRLENEIQTYR.S ORFP:YJR013W 2 3 12.1% 305 35591 9.3 U YJR013W SGDID:S0003774, Chr X from 460368-461285 * bethtii4e05.3230.3230.2 3.1671 0.1413 2285.71 2284.806 7593.5 1 588.3 42.1 1 R.ALILESIWLLNPMVITISTR.G * bethtii4e.2150.2150.2 3.2713 0.3895 2227.88 2228.511 9167.9 1 590.0 46.9 2 K.IYGYEFLDQAYLYHLYR.T ORFP:YBR189W 2 3 11.3% 195 22299 10.1 U RPS9B SGDID:S0000393, Chr II from 604466-604472,604886-605466 ORFP:YPL081W 2 3 11.2% 197 22443 10.0 U RPS9A SGDID:S0006002, Chr XVI from 404945-404951,405453-406039 bethtii4e06.1118.1118.2 2.5278 0.2202 1035.82 1036.219 4225.0 1 579.7 85.7 1 R.RLQTQVYK.L bethtii4e05.0986.0986.2 2.7422 0.2711 1473.97 1473.631 4592.3 1 617.3 61.5 2 K.HIDFAPTSPFGGAR.P ORFP:YJR077C 2 2 10.3% 311 32812 9.3 U MIR1 SGDID:S0003838, Chr X from 576947-577882, reverse complement * bethtii4e.1671.1671.2 3.4107 0.3826 1777.02 1778.021 7601.8 1 909.6 56.2 1 R.LVSQPQFANGLVGGFSR.I * bethtii4e02.1350.1350.2 3.0373 0.4232 1453.53 1454.71 7975.9 1 1331.7 67.9 1 K.APGQSTVGLLAQLAK.Q ORFP:YGR192C 2 2 8.4% 332 35747 7.0 U TDH3 SGDID:S0003424, Chr VII from 882807-883805, reverse complement ORFP:YJR009C 2 2 8.4% 332 35847 7.0 U TDH2 SGDID:S0003769, Chr X from 453374-454372, reverse complement bethtii4e02.1304.1304.2 2.9354 0.2956 1474.16 1471.734 7604.3 1 774.5 61.5 1 R.VPTVDVSVVDLTVK.L bethtii4e02.0997.0997.2 2.6492 0.2817 1753.52 1753.865 8187.1 1 595.5 50.0 1 K.LVSWYDNEYGYSTR.V ORFP:YHR203C 2 4 7.7% 261 29410 10.1 U RPS4B SGDID:S0001246, Chr VIII from 504472-504485,504755-505526, reverse complement ORFP:YJR145C 2 4 7.7% 261 29410 10.1 U RPS4A SGDID:S0003906, Chr X from 701720-701733,701990-702761, reverse complement bethtii4e06.1646.1646.2 4.6307 0.3138 2116.46 2117.496 7667.2 1 1474.7 63.9 3 R.LNNVFVIGEQGKPYISLPK.G bethtii4e05.1652.1652.2 3.2284 0.1204 2174.67 2174.548 8043.9 1 856.2 52.6 1 R.LNNVFVIGEQGKPYISLPKG.K ORFP:YBR118W 3 5 7.6% 458 50033 9.0 U TEF2 SGDID:S0000322, Chr II from 477629-479005 ORFP:YPR080W 3 5 7.6% 458 50033 9.0 U TEF1 SGDID:S0006284, Chr XVI from 700590-701966 bethtii4e04.0708.0708.2 3.9379 0.3435 1357.61 1356.524 8334.3 1 1330.5 77.3 2 K.YQVTVIDAPGHR.D bethtii4e06.1719.1719.2 2.6679 0.19 1327.08 1327.569 6301.4 1 895.6 72.7 1 R.EHALLAFTLGVR.Q bethtii4e.1062.1062.2 2.6894 0.2174 1025.42 1026.224 5369.8 1 873.2 80.0 2 K.IGGIGTVPVGR.V ORFP:YOR204W 2 2 5.8% 604 65553 7.8 U DED1 SGDID:S0005730, Chr XV from 722910-724724 * bethtii4e.2188.2188.2 2.5586 0.3448 1532.61 1529.776 8053.7 1 391.1 50.0 1 K.TGGFLFPVLSESFK.T * bethtii4e02.1289.1289.2 2.6719 0.0989 2210.35 2211.441 9672.5 54 386.3 35.0 1 D.AMMSAPGSRSNSRRGGFGRNN.N gi|7463016|pir||S77957 2 2 4.5% 269 27961 6.7 U lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes * bethtii4e06.1175.1175.2 2.8631 0.3243 1208.08 1208.363 6167.8 1 979.7 72.7 1 K.RVLGQLHGGPSS.C * bethtii4e04.0591.0591.2 2.55 0.1875 1051.53 1052.175 5276.4 3 435.3 65.0 1 R.VLGQLHGGPSS.C ORFP:YKR061W 1 17 4.2% 425 50651 5.8 U KTR2 SGDID:S0001769, Chr XI from 557313-558590 * bethtii4e.1735.1735.2 3.7879 0.1991 2210.99 2210.423 8830.1 2 865.9 50.0 17 D.SNHPDNIDLNVISCLRRW.W ORFP:YML103C 2 2 2.5% 1655 188576 5.6 U NUP188 SGDID:S0004571, Chr XIII from 62582-67549, reverse complement * bethtii4e.0155.0155.2 2.7734 0.0992 2233.9 2231.546 7853.5 2 404.5 40.0 1 N.SSSSSDIIVPDLIELKSDLLV.A * bethtii4e05.1332.1332.2 3.4251 0.1253 2228.56 2227.696 5308.3 1 821.3 52.6 1 R.PLLRSVLVLLELVSSGDRFI.E Proteins Peptide IDs Copies Unfiltered 5177 12421 23227 Redundant 31 103 224 Nonredundant 24 97 214 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0