DTASelect v1.9 /wfs/bfd/3/scott/beth/tii5e /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YJL208C 13 137 42.2% 329 37210 8.8 U NUC1 SGDID:S0003744, Chr X from 40194-41183, reverse complement * bethtii5e-01.2690.2690.3 7.1966 0.5083 2186.51 2187.671 7876.2 1 3759.5 54.8 4 R.ILLSGLVGLGAGTGLTYLLLNK.H * bethtii5e-06.2682.2682.2 6.9648 0.4902 2189.08 2187.671 7836.1 1 2871.6 71.4 47 R.ILLSGLVGLGAGTGLTYLLLNK.H * bethtii5e-06.1286.1286.2 2.6132 0.1564 2047.46 2049.291 6370.0 1 679.7 50.0 1 K.HSPTQIIETPYPPTQKPN.S * bethtii5e-05.1238.1238.2 3.6071 0.4375 1514.07 1514.684 4460.3 1 743.6 75.0 14 K.YGFPGPIHDLQNR.E * bethtii5e-01.2208.2208.2 2.7042 0.2543 2056.44 2056.282 7575.6 1 321.5 40.6 1 R.QTQNPYWVLEHITPESL.A * bethtii5e-01.2458.2458.2 3.5514 0.3138 2353.09 2354.627 4732.0 1 434.1 50.0 15 R.QTQNPYWVLEHITPESLAAR.N * bethtii5e-01.2534.2534.3 4.2951 0.3539 2353.39 2354.627 6237.1 1 809.0 38.2 1 R.QTQNPYWVLEHITPESLAAR.N * bethtii5e-05.2494.2494.3 4.491 0.4115 2231.14 2230.571 6129.1 1 1440.1 44.7 8 R.VNYEVIGNPPSIAVPTHFFK.L * bethtii5e-05.2042.2042.2 4.3189 0.4659 2232.32 2230.571 4972.5 1 576.5 47.4 39 R.VNYEVIGNPPSIAVPTHFFK.L * bethtii5e-06.1800.1800.2 4.027 0.3838 2344.0 2343.731 4547.5 1 599.2 47.5 1 R.VNYEVIGNPPSIAVPTHFFKL.I * bethtii5e-01.0167.0167.2 2.6534 0.1872 1322.42 1323.535 5423.9 1 743.5 66.7 1 K.LIVAEAPTANPAR.E * bethtii5e-02.0182.0182.2 3.4004 0.1881 2157.31 2158.413 4540.8 1 870.9 50.0 2 R.EDIAVAAFVLPNEPISNETK.L * bethtii5e-01.0102.0102.2 3.4343 0.3621 1518.05 1518.707 4114.0 1 621.1 70.8 3 K.LTDFEVPIDALER.S ORFP:YMR099C 9 27 32.0% 297 33956 6.1 U YMR099C SGDID:S0004705, Chr XIII from 463933-464826, reverse complement * bethtii5e-02.0901.0901.2 2.6687 0.0938 1362.16 1363.51 6906.3 1 1376.6 77.3 1 K.SEEQLWLSTAAK.L * bethtii5e-01.2182.2182.2 2.7064 0.272 1231.09 1231.524 3226.7 1 369.6 63.6 2 R.GGIPLVFPVFGK.N * bethtii5e-01.2155.2155.1 2.495 0.4612 1232.39 1231.524 2561.1 1 197.0 59.1 2 R.GGIPLVFPVFGK.N * bethtii5e-06.2074.2074.2 3.2669 0.3773 1431.01 1431.639 6259.6 1 1049.0 83.3 4 K.FNWLFHTYFR.I * bethtii5e-06.1530.1530.3 4.6841 0.3311 3167.81 3169.431 8817.3 1 965.3 27.9 2 K.ESYVDKHPVVTFNQETDVIYQNVSAER.A * bethtii5e-06.1175.1175.2 2.6276 0.1211 895.66 896.078 5001.2 3 785.2 85.7 1 K.GVQIHTLK.R * bethtii5e-06.1912.1912.2 4.5132 0.3697 2030.14 2031.321 7532.7 1 807.4 56.7 9 K.RYNLPDTVVWNPWIEK.S * bethtii5e-01.1978.1978.2 3.3736 0.3286 1873.96 1875.134 6663.6 1 1495.7 75.0 5 R.YNLPDTVVWNPWIEK.S * bethtii5e-06.1426.1426.2 2.9345 0.1848 1323.68 1324.532 6331.8 1 656.1 66.7 1 K.KWNAYQLLCK.E ORFP:YKR079C 22 100 31.3% 838 96816 5.9 U YKR079C SGDID:S0001787, Chr XI from 586425-588941, reverse complement * bethtii5e-06.2750.2750.2 5.4165 0.4932 2378.31 2378.693 7520.9 1 1933.8 65.8 2 K.SNLVLHYGNDILNYIVSTWR.Y * bethtii5e-01.0959.0959.2 2.6985 0.2056 1040.72 1041.192 5608.3 1 619.8 75.0 1 R.LGVFDSFQK.G * bethtii5e-01.0104.0104.2 2.6816 0.1484 2125.25 2126.284 7261.2 2 469.5 44.4 2 R.YDPSSDPHLNVELPDLDAK.V * bethtii5e-02.1200.1200.2 2.8573 0.3186 1726.82 1727.912 8004.6 1 694.8 50.0 4 K.VEVSTNYEISFSPVR.G * bethtii5e-01.0106.0106.2 3.994 0.3136 2090.26 2091.452 3523.2 1 1230.3 79.4 3 K.VLILDIPDDLYLNAFVEK.F * bethtii5e-06.1130.1130.1 2.0907 0.1388 1079.18 1080.25 3564.8 1 290.6 68.8 1 K.VNHMISHNK.I * bethtii5e-06.1114.1114.2 2.7238 0.4243 1079.36 1080.25 8613.2 1 835.4 75.0 1 K.VNHMISHNK.I * bethtii5e-01.2214.2214.2 4.073 0.418 1799.14 1798.089 5301.8 1 969.5 65.6 4 K.ISPNTISFFGSALTTLK.L * bethtii5e-01.2222.2222.2 3.5109 0.3985 1910.81 1911.249 8638.9 1 1115.4 55.9 1 K.ISPNTISFFGSALTTLKL.K * bethtii5e-01.2210.2210.2 3.0413 0.356 1596.86 1597.852 6394.1 1 687.3 57.1 1 S.PNTISFFGSALTTLK.L * bethtii5e-01.2034.2034.2 3.5331 0.4235 1386.15 1386.631 5632.5 1 674.4 62.5 5 N.TISFFGSALTTLK.L * bethtii5e-01.2055.2055.2 3.3053 0.3321 1500.15 1499.791 7426.4 1 1140.4 69.2 1 N.TISFFGSALTTLKL.K * bethtii5e-01.1106.1106.2 3.5273 0.2956 1215.88 1216.339 7526.2 1 1194.9 77.8 5 K.DNIHIFSQNK.T * bethtii5e-05.1178.1178.2 3.8148 0.4672 1623.14 1623.89 6568.3 1 1751.6 76.7 28 K.HVEIITLGTGSALPSK.Y * bethtii5e-01.1976.1976.2 4.1158 0.461 1756.53 1755.987 8928.2 1 1942.9 73.3 17 R.NIMLDAGENTLGTIHR.M * bethtii5e-01.1819.1819.2 4.0431 0.2577 1391.17 1391.61 8293.4 1 1904.5 90.0 3 K.FVNEWLVLENK.E * bethtii5e-01.2047.2047.2 2.7013 0.2074 1787.56 1787.935 7469.9 1 797.3 61.5 1 K.YISCEHFINDSFVR.M * bethtii5e-01.0174.0174.2 3.2074 0.3694 1465.65 1466.591 5689.5 1 743.2 66.7 1 K.VSYSGDTRPNIEK.F * bethtii5e-01.2555.2555.3 4.3413 0.4433 3176.8 3176.547 6693.7 1 528.1 25.9 8 K.FSLEIGYNSDLLIHEATLENQLLEDAVK.K * bethtii5e-02.1073.1073.2 2.8108 0.2639 1499.09 1499.725 7821.4 1 867.6 66.7 1 K.LPQLDNNIDVMAR.E * bethtii5e-05.2499.2499.2 2.5576 0.3139 1901.14 1902.091 6280.1 1 1539.2 78.6 1 R.EFCFAFDSMIVDYEK.I * bethtii5e-03.0918.0918.2 4.3664 0.238 2109.92 2107.143 7379.0 1 1151.2 58.8 9 K.EEEEDVDDVESVQDLEVK.L ORFP:YBL087C 2 6 25.5% 137 14473 10.3 U RPL23A SGDID:S0000183, Chr II from 59815-59856,60361-60732, reverse complement ORFP:YER117W 2 6 25.5% 137 14473 10.3 U RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649 bethtii5e-01.1906.1906.2 3.6291 0.3786 2017.37 2017.274 8313.1 1 1076.8 52.6 3 R.ISLGLPVGAIMNCADNSGAR.N bethtii5e-01.1958.1958.2 3.3626 0.3903 1504.09 1504.843 6080.8 1 1286.6 71.4 3 R.LPAASLGDMVMATVK.K KERATIN03 5 5 18.0% 593 59519 5.2 U no description * bethtii5e-04.1006.1006.2 2.5793 0.2965 1707.91 1708.784 8171.7 1 494.9 41.7 1 K.GSLGGGFSSGGFSGGSFSR.G * bethtii5e-01.2107.2107.2 2.5468 0.1584 2298.95 2297.404 6418.3 133 159.8 24.1 1 G.SFGGGGFGGGGFGGGFGGGFGGDGGLLS.G * bethtii5e-04.2332.2332.2 2.8539 0.329 2369.0 2368.652 11627.6 1 1092.4 45.0 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii5e-01.1971.1971.2 2.5932 0.0873 1796.53 1798.09 10283.6 1 1044.5 53.3 1 R.NVQALEIELQSQLALK.Q * bethtii5e-01.2664.2664.2 3.5749 0.3093 2746.42 2748.075 9387.2 1 2139.8 56.8 1 R.YCVQLSQIQAQISALEEQLQQIR.A ORFP:YBR031W 3 3 15.5% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 3 3 15.5% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii5e-01.2370.2370.2 2.8272 0.1396 1820.21 1821.127 7897.9 1 1097.0 55.6 1 R.YATASAIAATAVASLVLAR.G bethtii5e-06.1992.1992.2 3.6841 0.3433 2611.11 2612.992 7812.4 1 732.1 40.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii5e-01.1912.1912.2 2.6926 0.2441 1313.0 1313.539 6149.7 1 1187.8 80.0 1 R.FVIWTEAAFTK.L ORFP:YHL001W 2 3 13.8% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 2 3 13.8% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethtii5e-01.2495.2495.3 5.1271 0.4144 2050.78 2052.468 9244.2 1 2497.4 48.6 1 R.QAINLGQVVLTPLTFALPR.G bethtii5e-01.2492.2492.2 3.3804 0.4516 2050.81 2052.468 7742.7 1 854.8 52.8 2 R.QAINLGQVVLTPLTFALPR.G ORFP:YJR123W 2 3 12.4% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651594-652271 * bethtii5e-01.1820.1820.2 3.7036 0.3491 1339.36 1340.609 9783.2 1 2207.8 83.3 1 R.VNQAIALLTIGAR.E * bethtii5e-01.2360.2360.2 4.4477 0.2978 1590.22 1587.811 8401.6 1 1837.5 71.4 2 K.TIAETLAEELINAAK.G ORFP:YGR214W 3 3 9.9% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920570-920659,921115-921783 ORFP:YLR048W 3 3 9.9% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii5e-06.1180.1180.1 2.5377 0.3776 1269.52 1270.434 4191.1 1 226.3 58.3 1 K.FAAHTGATPIAGR.F bethtii5e-06.1178.1178.2 2.6942 0.3069 1269.99 1270.434 4778.4 1 798.5 79.2 1 K.FAAHTGATPIAGR.F bethtii5e-01.1671.1671.2 3.2012 0.4422 1406.43 1404.565 3034.9 1 459.4 81.8 1 R.FTPGSFTNYITR.S KERATIN22 3 3 8.1% 645 65865 8.0 U no description * bethtii5e-01.1670.1670.2 2.6424 0.3076 1839.3 1840.005 10166.1 1 998.2 42.9 1 K.SISISVAGGGGGFGAAGGFGGR.G * bethtii5e-01.1750.1750.3 3.8709 0.3489 2398.9 2400.445 8540.9 1 3969.3 44.0 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii5e-01.1754.1754.2 4.2573 0.398 2399.58 2400.445 10222.1 1 3164.4 55.2 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F ORFP:YNL161W 2 2 5.8% 756 86946 7.9 U CBK1 SGDID:S0005105, Chr XIV from 332594-334864 * bethtii5e-01.2774.2774.2 2.6761 0.0831 1718.15 1717.878 6716.4 14 594.3 46.7 1 T.DVPALNYPATPPPHNN.Y * bethtii5e-05.1942.1942.3 3.7323 0.1266 3424.35 3425.059 6375.8 11 281.8 21.3 1 L.IMEFLPGGDLMTMLIRWQLFTEDVTRFY.M KERATIN02 2 2 5.1% 622 61987 5.2 U no description * bethtii5e-01.1722.1722.3 3.8456 0.4574 2706.13 2706.761 9714.6 1 1519.5 29.0 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii5e-01.1738.1738.2 3.9478 0.4706 2708.63 2706.761 9038.8 1 952.7 35.5 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G ORFP:YOR204W 2 2 4.8% 604 65553 7.8 U DED1 SGDID:S0005730, Chr XV from 722910-724724 * bethtii5e-01.2251.2251.2 2.6041 0.2856 1529.29 1529.776 5114.6 1 615.0 61.5 1 K.TGGFLFPVLSESFK.T * bethtii5e-01.1664.1664.2 2.5056 0.2392 1371.43 1372.608 9489.3 1 895.3 53.6 1 R.SGAATLLVATAVAAR.G ORFP:YKR061W 1 39 4.2% 425 50651 5.8 U KTR2 SGDID:S0001769, Chr XI from 557313-558590 * bethtii5e-05.1478.1478.2 3.9687 0.2254 2211.13 2210.423 7973.6 1 1115.1 55.9 39 D.SNHPDNIDLNVISCLRRW.W Proteins Peptide IDs Copies Unfiltered 4958 8139 20704 Redundant 18 71 335 Nonredundant 14 71 335 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0