DTASelect v1.9 /wfs/bfd/3/ian/october2004/cheeseman/cenph /wfs/bfd/scratch/yates/ncbi/HMR_022704.fasta SEQUEST 2.7 in SQT format. true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide false Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence gi|12597655|ref|NP_075060.1| 6 7 26.3% 247 28481 5.3 U centromere protein H; kinetochore protein CENP-H [Homo sapiens] * cenph-08.09132.09132.2 2.7951 0.1114 1350.13 1350.558 8202.2 2 605.4 60.0 1 R.AQTKQQLLEYK.S * cenph-02.12130.12130.2 5.1753 0.2034 1459.95 1460.578 8063.5 1 2210.4 90.9 2 K.IEDLENEIEEVK.V * cenph-02.07390.07390.2 2.5935 0.3369 1153.01 1153.354 3458.8 1 325.9 77.8 1 R.QSSVLMDNMK.H * cenph-02.07458.07458.2 3.7121 0.2932 1378.69 1379.423 6981.2 1 1371.5 85.0 1 K.SQQESWDLEEK.L * cenph-02.08042.08042.2 4.0836 0.3512 1309.23 1309.391 7854.7 1 1722.2 90.0 1 K.IDLDSMENSER.I * cenph-02.08800.08800.2 2.8483 0.1849 1143.03 1143.285 5722.3 1 844.0 77.8 1 K.VNWAEDPALK.E gi|4557705|ref|NP_000217.1| 5 6 17.4% 622 61987 5.2 U keratin 9 [Homo sapiens] * cenph-04.15313.15313.2 4.2441 0.5341 2705.65 2706.761 10315.0 1 891.1 35.5 2 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * cenph-08.03466.03466.3 5.5912 0.3741 2896.07 2897.146 6541.6 1 1120.6 33.7 1 K.NHKEEMSQLTGQNSGDVNVEINVAPGK.D * cenph-08.03530.03530.3 5.6834 0.4736 3664.4 3664.878 11864.1 1 1601.3 27.4 1 K.NRKDIENQYETQITQIEHEVSSSGQEVQSSAK.E * cenph-08.03543.03543.3 6.94 0.5041 3266.45 3266.413 8641.9 1 2335.6 36.6 1 K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E * cenph-03.14395.14395.2 2.9284 0.3401 2096.43 2096.308 9553.1 1 804.8 53.1 1 R.QEIECQNQEYSLLLSIK.M gi|16905073|ref|NP_071428.2| 3 6 14.5% 269 31655 4.9 U SoxLZ/Sox6 leucine zipper binding protein; SoxLZ/Sox6-binding protein Solt [Homo sapiens] * cenph-08.27397.27397.2 3.2222 0.3333 2588.85 2590.048 8470.9 1 747.5 41.3 1 K.LSLIGTETLTDSNAQLSLLIMQVK.C * cenph-08.27371.27371.3 5.1442 0.3742 2588.93 2590.048 7173.6 1 1407.8 35.9 3 K.LSLIGTETLTDSNAQLSLLIMQVK.C * cenph-08.28560.28560.2 3.7593 0.2831 1835.49 1836.141 3048.6 1 691.7 75.0 2 K.ISDSFWPPYVELLLR.N gi|17318569|ref|NP_006112.2| 3 5 7.6% 644 66067 8.1 U keratin 1; Keratin-1; cytokeratin 1; hair alpha protein [Homo sapiens] * cenph-03.07733.07733.2 3.5324 0.4178 1658.23 1658.768 8571.3 1 1348.8 62.5 1 R.SGGGFSSGSAGIINYQR.R * cenph-03.07011.07011.2 4.1263 0.4683 1767.25 1766.79 7457.1 1 1566.9 60.5 2 R.FSSCGGGGGSFGAGGGFGSR.S * cenph-02.13322.13322.2 4.0547 0.2106 1476.59 1476.629 8600.4 1 1628.0 77.3 2 K.WELLQQVDTSTR.T gi|41352697|ref|NP_006724.2| 3 8 4.6% 756 86720 8.8 U follicle-stimulating hormone primary response protein 1; leucine-rich primary response protein 1; follicle-stimulating hormone primary response protein; centromeric protein 1 [Homo sapiens] * cenph-02.12215.12215.2 3.3755 0.3773 1716.39 1716.845 8410.6 1 881.5 56.7 1 R.TSQGSSSFQTTLSAWK.V * cenph-08.29170.29170.2 6.1519 0.2898 1971.71 1971.258 8171.8 1 2962.0 72.2 6 K.NGLASEEIDILLNIALSGK.F * cenph-08.30341.30341.3 4.1335 0.1506 1972.34 1971.258 7836.6 1 3073.9 52.8 1 K.NGLASEEIDILLNIALSGK.F gi|21359945|ref|NP_071741.2| 2 2 2.4% 1015 114334 5.6 U chromosome condensation protein G [Homo sapiens] * cenph-08.13342.13342.2 2.7376 0.1657 2216.29 2215.598 7892.2 17 416.3 38.9 1 N.DGRKLIPVETLTPEIALYW.C 5 cenph-02.08378.08378.1 1.8719 0.4075 584.54 584.82 2872.4 7 268.6 75.0 1 Q.LILII.K gi|27894370|ref|NP_004548.2| 2 4 2.0% 2002 209419 5.8 U notch4 preproprotein [Homo sapiens] * cenph-07.16422.16422.3 4.1576 0.0892 2212.04 2213.304 10182.9 12 1021.2 32.5 1 L.CGSFPEPCANGGTCLSLSLGQ.G * cenph-08.15450.15450.3 4.129 0.1177 2211.86 2212.516 9575.7 39 1012.4 32.9 3 N.HWDLLTLLEGAGPPEARHKA.T gi|4503235|ref|NP_000769.1| 3 3 1.9% 519 59288 8.8 N cytochrome P450, family 4, subfamily A, polypeptide 11; cytochrome P450, subfamily IVA, polypeptide 11; fatty acid omega-hydroxylase; P450HL-omega; alkane-1 monooxygenase; lauric acid omega-hydroxylase [Homo sapiens] 5 cenph-02.08378.08378.1 1.8719 0.4075 584.54 584.82 2872.4 7 268.6 75.0 1 S.LLILL.L 5 cenph-02.08378.08378.1 1.8719 0.4075 584.54 584.82 2872.4 7 268.6 75.0 1 L.LLLLI.K 5 cenph-03.10386.10386.1 1.8132 0.1165 711.8 712.994 3534.8 14 347.9 80.0 1 L.LLLLIK.A gi|4506879|ref|NP_002997.1| 2 2 1.7% 402 42148 4.4 N selectin P ligand [Homo sapiens] 5 cenph-02.08378.08378.1 1.8719 0.4075 584.54 584.82 2872.4 7 268.6 75.0 1 L.LLLLI.L 5 cenph-02.08378.08378.1 1.8719 0.4075 584.54 584.82 2872.4 7 268.6 75.0 1 L.LLILL.G Proteins Peptide IDs Copies Unfiltered 32218 107748 484972 Redundant 9 29 43 Nonredundant 9 25 39 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0