DTASelect v2.0.20 /data/1/catclw/Projects/Jamie/November/TiO2/splitted /garibaldi/people-b/applications/yates/dbase/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta SEQUEST 3.0 in SQT format. --trypstat -e con -p 1 --fp 0.1 true Use criteria 0.0 Minimum peptide confidence 0.1 Peptide false positive rate 0.0 Minimum protein confidence 1.0 Protein false positive rate 1 Minimum charge state 16 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement false Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling con Exclude protein names matching 0 Minimum modified peptides per locus 1000 Minimum redundancy for low coverage loci 1 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN Conf% M+H+ CalcM+H+ TotalIntensity SpR ZScore IonProportion Redundancy Sequence YIL002W-A 11 41 98.6% 69 7729 4.7 U YIL002W-A SGDID:S000028835, Chr IX from 350298-350507, Uncharacterized ORF, "Identified by expression profiling and mass spectrometry" * Jamie_phos_01_itms_32.19320.19320.3 6.4079 0.3731 100.0 2586.8943 2585.9146 9253.9 1 7.247 45.7 3 M.TRDTPEDVSTAGAKDILDVLNLLK.G * Jamie_phos_01_itms_32.19472.19472.4 5.4034 0.3127 100.0 2587.7766 2585.9146 5769.0 1 5.591 38.4 1 M.TRDTPEDVSTAGAKDILDVLNLLK.G * Jamie_phos_01_itms_30.18532.18532.3 6.2118 0.4109 100.0 3085.6143 3086.4233 10879.0 1 8.408 38.4 1 M.TRDTPEDVSTAGAKDILDVLNLLKGGEEK.I * Jamie_phos_01_itms_30.18428.18428.4 7.2602 0.4348 100.0 3085.9365 3086.4233 9505.7 1 8.119 31.0 4 M.TRDTPEDVSTAGAKDILDVLNLLKGGEEK.I * Jamie_phos_01_itms_30.18600.18600.4 3.7335 0.2881 100.0 3165.8965 3166.4233 8036.2 3 4.897 25.6 1 M.TRDT*PEDVSTAGAKDILDVLNLLKGGEEK.I * Jamie_phos_01_itms_9.05930.05930.2 3.5054 0.4132 100.0 1562.3922 1563.8036 7683.2 1 6.996 70.8 7 K.ISEVELKLDEMEK.K * Jamie_phos_01_itms_9.05879.05879.3 2.6113 0.2379 99.5 1563.2943 1563.8036 4027.0 40 4.676 43.8 1 K.ISEVELKLDEMEK.K * Jamie_phos_02_itms_5.05227.05227.2 3.3048 0.3593 100.0 1691.1522 1691.9777 9503.3 1 6.497 61.5 1 K.ISEVELKLDEMEKK.M * Jamie_phos_01_itms_15.09284.09284.3 3.538 0.2649 100.0 2468.1243 2468.7876 7902.7 3 4.594 31.2 2 K.KMDSLLVQLEDLHRDNNDLAK.S * Jamie_phos_01_itms_15.09518.09518.4 5.0323 0.1749 100.0 2469.8167 2468.7876 6512.9 1 5.171 34.2 9 K.KMDSLLVQLEDLHRDNNDLAK.S * Jamie_phos_01_itms_14.08757.08757.4 5.6512 0.4839 100.0 2985.2566 2986.327 6821.3 1 6.563 27.3 11 K.KMDSLLVQLEDLHRDNNDLAKSSSQK.- YLR154C-H 1 1 81.4% 43 4707 9.6 U YLR154C-H SGDID:S000028562, Chr XII from 468959-468828, reverse complement, Uncharacterized ORF, "Identified by fungal homology and RT-PCR" YLR159C-A 1 1 81.4% 43 4707 9.6 U YLR159C-A SGDID:S000028566, Chr XII from 485843-485712, reverse complement, Uncharacterized ORF, "Identified by fungal homology and RT-PCR" YLR157C-C 1 1 81.4% 43 4707 9.6 U YLR157C-C SGDID:S000028565, Chr XII from 482191-482060, reverse complement, Uncharacterized ORF, "Identified by fungal homology and RT-PCR" YLR156C-A 1 1 81.4% 43 4707 9.6 U YLR156C-A SGDID:S000028564, Chr XII from 472611-472480, reverse complement, Uncharacterized ORF, "Identified by fungal homology and RT-PCR" Jamie_phos_04_itms_28.23528.23528.4 3.8563 0.0441 90.2 3924.1365 3928.2205 8572.0 2 3.25 22.5 1 K.T*TAAPEFRVWSPT*TLLGQALTSLTTVDRTGNGAFW.- YDL130W 2 6 67.0% 106 10668 4.0 U RPP1B SGDID:S000002288, Chr IV from 229906-230019,230321-230527, Verified ORF, "Ribosomal protein P1 beta, component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; accumulation is regulated by phosphorylation and interaction with the P2 stalk component" * Jamie_phos_02_itms_8.07048.07048.2 4.472 0.3489 100.0 1665.1921 1664.815 8046.7 1 8.233 70.0 5 K.AAGANVDNVWADVYAK.A * Jamie_phos_01_itms_32.19661.19661.4 5.4872 0.4253 100.0 5451.2563 5450.6016 8786.4 1 6.785 16.4 1 K.DLKEILSGFHNAGPVAGAGAASGAAAAGGDAAAEEEKEEEAAEES*DDDMGFGLFD.- YBR109C 4 11 66.0% 147 16135 4.3 U CMD1 SGDID:S000000313, Chr II from 458356-457913, reverse complement, Verified ORF, "Calmodulin; Ca++ binding protein that regulates Ca++ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca++ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin" * Jamie_phos_02_itms_26.18103.18103.3 5.9976 0.5221 100.0 4110.6245 4109.526 6736.3 1 9.379 28.5 6 R.SLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR.Q * Jamie_phos_02_itms_26.18098.18098.4 4.4578 0.1041 97.7 4111.8564 4109.526 6486.0 1 3.653 20.4 2 R.SLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSR.Q * Jamie_phos_01_itms_29.17858.17858.3 3.8849 0.0879 95.1 3172.5244 3169.4692 9251.3 1 3.686 27.7 1 K.SNDSEQELLEAFKVFDKNGDGLISAAELK.H * Jamie_phos_01_itms_36.21842.21842.3 5.5192 0.5174 100.0 3367.0444 3366.7217 10280.5 1 7.593 28.3 2 K.LTDAEVDDMLREVSDGSGEINIQQFAALLSK.- YOR257W 9 11 62.1% 161 18751 4.6 U CDC31 SGDID:S000005783, Chr XV from 811006-811491, Verified ORF, "Component of the spindle pole body (SPB) half-bridge, required for SPB duplication in mitosis and meiosis II; homolog of mammalian centrin; interacts with Kar1p" * Jamie_phos_01_itms_36.21735.21735.4 4.6323 0.2672 100.0 5130.0566 5131.5063 6118.1 73 4.824 15.1 1 K.NRSS*LQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELK.V * Jamie_phos_01_itms_36.21822.21822.3 4.8786 0.4429 100.0 4780.6143 4781.215 8666.9 1 6.617 21.9 1 R.SSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELK.V * Jamie_phos_01_itms_36.21920.21920.4 4.4933 0.3307 100.0 4782.6963 4781.215 3954.4 1 6.101 19.2 1 R.SSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELK.V * Jamie_phos_01_itms_30.18494.18494.3 3.3473 0.1722 98.1 2678.2744 2679.9866 7391.8 3 4.784 27.3 1 K.ALGFELPKREILDLIDEYDSEGR.H * Jamie_phos_02_itms_23.15904.15904.4 4.8118 0.1147 98.7 4551.4165 4551.1855 10386.4 6 3.518 19.4 1 K.ALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK.I * Jamie_phos_01_itms_22.13454.13454.2 3.3621 0.3804 100.0 1666.5322 1667.7667 5979.3 1 6.576 65.4 1 R.EILDLIDEYDSEGR.H * Jamie_phos_03_itms_8.08722.08722.2 2.9741 0.3624 100.0 1380.5322 1380.5549 8031.3 1 7.002 70.0 2 K.YDDFYIVMGEK.I * Jamie_phos_02_itms_7.06116.06116.2 3.1 0.2568 100.0 1836.4922 1836.0544 10333.0 1 5.319 56.7 2 R.AFQLFDDDHTGKISIK.N * Jamie_phos_02_itms_7.06571.06571.3 2.8376 0.16 95.9 2219.6643 2219.5051 5940.3 13 4.176 36.1 1 R.AFQLFDDDHTGKISIKNLR.R YKL042W 39 107 57.6% 363 42271 7.9 U SPC42 SGDID:S000001525, Chr XI from 358119-359210, Verified ORF, "Central plaque component of spindle pole body (SPB); involved in SPB duplication, may facilitate attachment of the SPB to the nuclear membrane" * Jamie_phos_01_itms_8.05248.05248.3 3.4012 0.1677 98.5 2166.3843 2166.4417 5870.2 55 3.964 35.3 1 R.NTEFINKAVQQNKELNFK.L * Jamie_phos_02_itms_6.05798.05798.3 2.9537 0.1312 94.2 2436.2644 2435.7886 9031.2 105 4.025 26.3 1 R.NTEFINKAVQQNKELNFKLR.E * Jamie_phos_01_itms_22.13551.13551.4 5.9652 0.3916 100.0 2761.4165 2762.2192 6941.5 1 6.872 35.6 7 R.SKLEKYVDITKKLEDQNLNLQIK.I * Jamie_phos_01_itms_22.13889.13889.3 4.2534 0.2237 100.0 2764.4944 2762.2192 7633.1 2 4.627 29.5 3 R.SKLEKYVDITKKLEDQNLNLQIK.I * Jamie_phos_03_itms_11.10462.10462.3 3.3725 0.1386 95.9 3447.3245 3447.9946 9529.0 5 4.239 23.2 2 R.SKLEKYVDITKKLEDQNLNLQIKISDLEK.K * Jamie_phos_03_itms_10.10156.10156.3 2.9387 0.1986 97.7 3576.5344 3576.1687 10670.4 8 4.578 23.3 1 R.SKLEKYVDITKKLEDQNLNLQIKISDLEKK.L * Jamie_phos_01_itms_6.03923.03923.4 3.2767 0.2359 100.0 2264.6965 2264.4575 6293.6 3 4.68 30.7 1 R.TTNKVSNTSDQDSRLKAIER.T * Jamie_phos_02_itms_9.07553.07553.2 3.3659 0.3957 100.0 1296.9922 1297.5554 9046.6 1 7.253 70.0 8 R.TLSVLTNYVMR.S * Jamie_phos_01_itms_24.14624.14624.3 4.4184 0.2424 100.0 2845.9744 2846.058 6901.8 1 4.733 32.3 8 R.SEDGNNDRMS*PLPSPLNTILPINNR.L * Jamie_phos_01_itms_27.16839.16839.2 2.6138 0.3364 100.0 2924.4521 2926.058 4561.1 13 5.869 29.2 1 R.SEDGNNDRMS*PLPS*PLNTILPINNR.L * Jamie_phos_01_itms_29.17972.17972.3 4.4649 0.2305 100.0 2926.7043 2926.058 7954.1 3 4.719 28.1 7 R.SEDGNNDRMS*PLPS*PLNTILPINNR.L * Jamie_phos_01_itms_29.18098.18098.3 4.3157 0.2638 100.0 2927.0942 2926.058 7633.7 11 5.334 28.1 3 R.SEDGNNDRMS*PLPSPLNT*ILPINNR.L * Jamie_phos_01_itms_14.08974.08974.2 2.4828 0.2683 100.0 1956.8922 1958.1624 5139.8 1 5.398 53.1 2 K.VNPSDDDIMMYESAELK.R * Jamie_phos_01_itms_6.04276.04276.3 3.2447 0.1284 98.1 1429.5543 1430.6011 4629.8 2 3.942 50.0 1 K.RVEEEIEELKR.K * Jamie_phos_01_itms_7.04586.04586.2 2.4613 0.1976 100.0 1118.5521 1118.2262 5619.2 119 4.21 68.8 1 R.VEEEIEELK.R * Jamie_phos_01_itms_27.16697.16697.2 3.3134 0.2561 100.0 2615.0122 2615.847 4289.3 1 7.579 50.0 1 R.KLS*LNNQLQELQSMMDGDDNIK.L * Jamie_phos_01_itms_26.16262.16262.3 5.1285 0.3578 100.0 3271.4343 3272.5837 4081.5 1 6.484 37.0 2 R.KLS*LNNQLQELQSMMDGDDNIKLDNVSK.H * Jamie_phos_01_itms_27.16445.16445.3 3.78 0.1909 99.6 3066.9543 3064.4097 9717.7 164 4.122 24.0 1 K.LSLNNQLQELQSMMDGDDNIKLDNVSK.H * Jamie_phos_02_itms_5.04668.04668.3 5.1582 0.4441 100.0 3022.9443 3024.0266 9091.0 1 7.84 30.0 2 R.HSSQSSRDYSPSSDACLECSNDLYEK.N * Jamie_phos_03_itms_4.05157.05157.3 4.3055 0.0444 93.3 3102.8342 3104.0266 5146.8 7 5.336 28.0 2 R.HSSQS*SRDYSPSSDACLECSNDLYEK.N * Jamie_phos_01_itms_7.04639.04639.3 4.3694 0.0772 95.9 3103.6443 3104.0266 5019.2 4 5.402 27.0 1 R.HSSQSSRDYS*PSSDACLECSNDLYEK.N * Jamie_phos_01_itms_8.05206.05206.3 4.3383 0.0313 91.9 3182.7544 3184.0266 4983.0 1 4.372 31.0 1 R.HSS*QSS*RDYSPSSDACLECSNDLYEK.N * Jamie_phos_02_itms_5.04923.04923.3 4.1111 0.0301 90.1 3184.8843 3184.0266 4720.0 3 3.796 28.0 1 R.HSSQSSRDY*S*PSSDACLECSNDLYEK.N * Jamie_phos_01_itms_7.04322.04322.4 6.1628 0.3555 100.0 3293.3765 3294.3179 8491.1 1 7.274 30.9 3 R.HSSQSSRDYSPSSDACLECSNDLYEKNR.V * Jamie_phos_02_itms_4.04612.04612.3 6.8254 0.4602 100.0 3293.5444 3294.3179 8586.4 1 8.159 37.0 3 R.HSSQSSRDYSPSSDACLECSNDLYEKNR.V * Jamie_phos_01_itms_7.04433.04433.3 4.7396 0.0987 98.1 3372.2944 3374.3179 4590.3 385 6.318 21.3 3 R.HSSQSSRDYS*PSSDACLECSNDLYEKNR.V * Jamie_phos_01_itms_7.04421.04421.4 3.5438 0.162 97.8 3376.1365 3374.3179 6487.5 11 4.242 25.3 1 R.HSSQSSRDYSPS*SDACLECSNDLYEKNR.V * Jamie_phos_02_itms_5.04685.04685.3 4.0066 0.2946 100.0 3453.5344 3454.3179 3432.8 303 5.922 21.3 1 R.HSS*QSSRDYSPS*SDACLECSNDLYEKNR.V * Jamie_phos_02_itms_5.04680.04680.3 2.993 0.1114 91.2 3455.3943 3454.3179 3327.3 20 3.89 23.1 1 R.HSS*QSSRDY*SPSSDACLECSNDLYEKNR.V * Jamie_phos_02_itms_6.05536.05536.4 3.1271 0.0996 90.8 5423.8164 5423.65 8119.4 2 3.365 15.2 1 R.HSSQSSRDYSPSSDACLECSNDLYEKNRVKPENNMSETFATPTPNNR.- * Jamie_phos_01_itms_9.05823.05823.2 5.0247 0.3682 100.0 2255.652 2254.2546 5647.9 1 7.86 69.4 16 R.DYSPSSDACLECSNDLYEK.N * Jamie_phos_03_itms_5.06441.06441.2 2.7186 0.1878 100.0 2336.0923 2334.2546 7373.9 1 4.226 41.7 2 R.DYSPSS*DACLECSNDLYEK.N * Jamie_phos_01_itms_11.07152.07152.2 3.5056 0.207 100.0 2336.5723 2334.2546 8135.7 1 4.252 50.0 5 R.DYS*PSSDACLECSNDLYEK.N * Jamie_phos_02_itms_6.05953.05953.2 2.7267 0.2698 100.0 2336.8323 2334.2546 6860.9 2 5.18 41.7 3 R.DYSPS*SDACLECSNDLYEK.N * Jamie_phos_02_itms_5.04931.04931.2 2.7809 0.4381 100.0 2523.5122 2524.546 8048.9 1 6.54 42.5 4 R.DYSPSSDACLECSNDLYEKNR.V * Jamie_phos_03_itms_5.05424.05424.3 2.5418 0.1775 95.1 2524.7344 2524.546 3468.7 3 4.191 35.0 1 R.DYSPSSDACLECSNDLYEKNR.V * Jamie_phos_01_itms_10.06268.06268.2 2.2721 0.3326 100.0 2218.392 2219.166 6387.1 2 5.098 38.2 1 D.YSPS*SDACLECSNDLYEK.N * Jamie_phos_01_itms_7.04408.04408.3 3.8556 0.2579 100.0 2227.1943 2228.355 7396.2 1 5.263 41.7 2 R.VKPENNMSETFAT*PTPNNR.- * Jamie_phos_01_itms_7.04420.04420.2 3.1343 0.3017 100.0 2229.0522 2228.355 7775.5 5 5.372 44.4 2 R.VKPENNMSETFAT*PTPNNR.- YPL124W 26 72 56.9% 253 29280 9.5 U SPC29 SGDID:S000006045, Chr XVI from 316754-317515, Verified ORF, "Inner plaque spindle pole body (SPB) component, links the central plaque component Spc42p to the inner plaque component Spc110p; required for SPB duplication" * Jamie_phos_01_itms_11.07173.07173.2 2.2566 0.2271 100.0 1217.8922 1217.2377 4073.4 1 4.383 81.2 2 K.KFQDDT*LNR.V * Jamie_phos_01_itms_9.05543.05543.4 3.6553 0.1532 97.8 2828.1765 2829.0532 6565.0 3 4.334 26.1 2 R.TSS*PVRTDKFASQNVIDDQRLEIK.Y * Jamie_phos_02_itms_5.05295.05295.3 2.457 0.2585 98.4 2828.1843 2829.0532 2651.4 13 4.435 30.4 2 R.T*SSPVRTDKFASQNVIDDQRLEIK.Y * Jamie_phos_03_itms_7.07914.07914.4 3.2218 0.1353 95.4 3389.8965 3390.6914 7053.7 34 3.603 22.2 2 R.TSS*PVRTDKFASQNVIDDQRLEIKYLER.I * Jamie_phos_01_itms_13.08390.08390.4 3.4031 0.2337 100.0 3390.9766 3390.6914 4926.3 62 4.237 25.3 3 R.TS*SPVRTDKFASQNVIDDQRLEIKYLER.I * Jamie_phos_02_itms_5.05138.05138.2 2.8658 0.2814 100.0 2121.172 2121.355 8012.5 1 5.544 50.0 1 R.TDKFASQNVIDDQRLEIK.Y * Jamie_phos_02_itms_5.05128.05128.3 4.1755 0.2533 100.0 2121.5942 2121.355 6169.0 7 5.658 35.3 3 R.TDKFASQNVIDDQRLEIK.Y * Jamie_phos_02_itms_10.08240.08240.3 4.7763 0.3568 100.0 2255.6343 2256.5205 6554.5 1 6.606 47.2 3 K.YLERIVYDQGTVIDNLTSR.I * Jamie_phos_01_itms_12.07886.07886.2 5.0095 0.4483 100.0 1694.0322 1694.8821 8058.7 1 8.531 82.1 9 R.IVYDQGTVIDNLTSR.I * Jamie_phos_01_itms_25.15482.15482.4 5.3897 0.2478 100.0 3108.4565 3107.4531 5772.6 1 6.081 30.1 4 R.ITRLESFILNSISDRGDKNFASLEHSR.S * Jamie_phos_01_itms_17.10560.10560.3 3.047 0.2042 98.3 3129.8342 3131.5073 5219.9 1 4.656 28.8 1 R.SFSGFPTNKTYGLQMGGLYENDMPYRR.S * Jamie_phos_03_itms_10.10242.10242.4 5.3243 0.2299 100.0 4381.7363 4382.572 5095.9 12 5.124 18.9 10 R.SSDNINKEGAREDRSSQIHIENEST*EDILKILSSSFHN.- * Jamie_phos_01_itms_23.14198.14198.4 4.4097 0.1767 100.0 4382.8164 4382.572 4511.7 6 3.383 20.3 1 R.SSDNINKEGAREDRS*SQIHIENESTEDILKILSSSFHN.- * Jamie_phos_02_itms_12.09259.09259.4 4.9349 0.3113 100.0 4383.177 4382.572 5386.3 2 5.796 20.3 2 R.SSDNINKEGAREDRSSQIHIENES*TEDILKILSSSFHN.- * Jamie_phos_01_itms_23.14048.14048.4 3.4708 0.1515 97.8 4461.2964 4462.572 3469.5 336 4.101 18.9 1 R.SSDNINKEGAREDRS*SQIHIENES*TEDILKILSSSFHN.- * Jamie_phos_03_itms_11.10791.10791.4 4.126 0.241 100.0 4461.4565 4462.572 3940.5 80 4.684 18.9 1 R.SSDNINKEGAREDRS*SQIHIENEST*EDILKILSSSFHN.- * Jamie_phos_02_itms_10.08332.08332.4 4.0556 0.16 99.0 4464.7363 4462.572 4098.4 98 3.861 19.4 1 R.SSDNINKEGAREDRSSQIHIENES*TEDILKILSSS*FHN.- * Jamie_phos_01_itms_25.15488.15488.4 4.3678 0.327 100.0 3210.6165 3210.352 5660.6 102 4.893 23.7 1 R.EDRSSQIHIENEST*EDILKILSSSFHN.- * Jamie_phos_01_itms_8.05270.05270.3 4.5916 0.3474 100.0 1922.6344 1923.9855 5890.0 1 5.855 48.3 1 R.SSQIHIENEST*EDILK.I * Jamie_phos_01_itms_8.05380.05380.2 4.1781 0.3467 100.0 1923.0122 1923.9855 5999.0 1 6.918 63.3 7 R.SSQIHIENEST*EDILK.I * Jamie_phos_01_itms_8.05398.05398.3 3.6661 0.1226 97.8 1923.5944 1923.9855 8425.3 171 5.008 35.0 1 R.SSQIHIENES*TEDILK.I * Jamie_phos_03_itms_5.05751.05751.2 3.1491 0.0991 97.3 1926.3922 1923.9855 4822.1 56 3.225 46.7 2 R.SSQIHIENES*TEDILK.I * Jamie_phos_01_itms_26.16023.16023.2 3.4275 0.376 100.0 2808.3123 2809.9604 4913.4 2 6.106 37.0 1 R.SSQIHIENEST*EDILKILSSSFHN.- * Jamie_phos_01_itms_26.16112.16112.3 7.0572 0.4074 100.0 2809.9443 2809.9604 6262.5 1 6.926 42.4 6 R.SSQIHIENEST*EDILKILSSSFHN.- * Jamie_phos_01_itms_27.16641.16641.3 4.3283 0.2998 100.0 2810.3044 2809.9604 7535.9 1 5.318 34.8 3 R.SSQIHIENES*TEDILKILSSSFHN.- * Jamie_phos_01_itms_25.15264.15264.3 3.9071 0.0533 91.9 2889.7444 2889.9604 4749.0 18 3.578 29.3 2 R.SSQIHIENEST*EDILKILSSS*FHN.- YIL149C 80 252 49.9% 1679 195140 6.0 U MLP2 SGDID:S000001411, Chr IX from 68067-63028, reverse complement, Verified ORF, "Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved in the Tel1p pathway that controls telomere length" * Jamie_phos_02_itms_9.07773.07773.2 2.2404 0.2257 100.0 1845.6122 1846.085 9066.4 87 4.288 36.7 1 R.SEEEVTKLNVLVDEIK.S * Jamie_phos_02_itms_5.05063.05063.4 4.8277 0.3254 100.0 3502.0166 3501.8296 7963.7 1 5.866 26.4 2 K.LKQLLDESSEQKNTAKEELNGLKDQLNEER.S * Jamie_phos_02_itms_5.04926.04926.3 3.7985 0.163 98.5 3261.6543 3260.496 7626.6 8 4.098 25.9 1 K.QLLDESSEQKNTAKEELNGLKDQLNEER.S * Jamie_phos_01_itms_7.04331.04331.3 3.3908 0.1208 96.2 2101.9443 2102.2656 7760.4 2 3.838 35.3 1 K.NTAKEELNGLKDQLNEER.S * Jamie_phos_01_itms_13.08066.08066.3 3.0489 0.1881 98.5 1819.4944 1819.8363 2562.5 5 4.047 43.3 10 R.DQGNDSLNDDLNKENK.L * Jamie_phos_01_itms_13.08168.08168.2 4.7209 0.3603 100.0 1820.0122 1819.8363 5450.6 1 6.338 66.7 28 R.DQGNDSLNDDLNKENK.L * Jamie_phos_03_itms_7.08181.08181.2 2.3101 0.1713 98.7 2015.8722 2016.2324 9264.2 1 4.696 43.3 1 K.LYQMQSNYESVFTYNK.F * Jamie_phos_02_itms_11.08979.08979.4 5.4634 0.253 100.0 5199.7764 5201.643 8932.2 1 5.495 18.2 3 R.SQLTSLEKDCSLRAIEKNDDNSCRNPEHTDVIDELIDTKLRLEK.S * Jamie_phos_01_itms_17.10739.10739.4 4.0851 0.0717 94.9 3685.1765 3682.9897 7223.7 12 4.04 21.7 2 R.AIEKNDDNSCRNPEHTDVIDELIDTKLRLEK.S * Jamie_phos_01_itms_32.19658.19658.3 3.2409 0.2526 100.0 2145.1143 2145.4197 4563.4 2 5.16 42.2 1 K.FQLQNQLEDFILELEHK.T * Jamie_phos_01_itms_37.22396.22396.4 4.3751 0.2325 100.0 3063.4966 3061.5046 5454.4 1 4.739 27.8 1 K.FQLQNQLEDFILELEHKTPELISFK.E * Jamie_phos_02_itms_7.06302.06302.2 3.4093 0.3374 100.0 1321.2122 1321.5107 7841.2 1 6.246 77.3 6 R.STELLETVSLTK.R * Jamie_phos_01_itms_8.05472.05472.3 2.6646 0.1791 97.8 1476.7743 1477.6982 4450.3 1 4.384 43.8 1 R.STELLETVSLTKR.K * Jamie_phos_02_itms_6.05506.05506.2 3.2309 0.2297 100.0 1477.3922 1477.6982 7441.0 1 5.427 70.8 4 R.STELLETVSLTKR.K * Jamie_phos_03_itms_12.11099.11099.3 3.3916 0.0752 90.1 3211.5544 3210.7393 8656.2 270 3.528 20.5 1 R.QVKLLLLNTSAIQETASPLSQDELISLRK.I * Jamie_phos_01_itms_24.14734.14734.3 4.1684 0.1871 100.0 2855.1843 2855.3018 8004.0 10 4.691 26.0 1 K.LLLLNTSAIQETASPLSQDELISLRK.I * Jamie_phos_02_itms_6.05364.05364.3 5.2252 0.2883 100.0 2374.2844 2374.6104 6116.1 1 6.454 45.0 5 R.KILESSNIVNENDSQAIITER.L * Jamie_phos_02_itms_5.05357.05357.2 3.0137 0.2655 100.0 2374.4321 2374.6104 7351.9 1 5.724 45.0 2 R.KILESSNIVNENDSQAIITER.L * Jamie_phos_02_itms_6.05947.05947.2 5.1764 0.3656 100.0 2246.172 2246.4363 8054.3 1 7.885 57.9 9 K.ILESSNIVNENDSQAIITER.L * Jamie_phos_02_itms_6.05961.05961.3 4.9449 0.3275 100.0 2247.4443 2246.4363 8268.1 1 5.972 44.7 4 K.ILESSNIVNENDSQAIITER.L * Jamie_phos_03_itms_5.06356.06356.2 4.0941 0.2461 100.0 1551.3922 1549.721 7702.4 1 5.747 83.3 12 R.LVEFSNVNELQEK.N * Jamie_phos_01_itms_9.06094.06094.2 2.2631 0.0934 95.5 1130.9722 1131.2836 7808.0 18 3.449 75.0 1 K.NVELLNCIR.I * Jamie_phos_01_itms_7.04434.04434.3 5.1157 0.4591 100.0 2339.2444 2338.5518 6335.3 1 7.772 33.3 2 K.LLASTEENKANTNSVTSMEAAR.E * Jamie_phos_02_itms_8.06883.06883.3 3.3299 0.1964 99.0 2346.8943 2345.612 9338.4 19 4.499 30.0 2 R.ELEAELSSTKVENSAIIQNLR.K * Jamie_phos_01_itms_19.11679.11679.3 3.2426 0.2552 100.0 1770.7444 1770.0509 3475.6 95 6.038 41.1 3 R.MLEEAIDHLKAELEK.Q * Jamie_phos_01_itms_6.04105.04105.3 3.7729 0.155 99.0 2123.9343 2124.33 6106.3 1 4.716 39.7 1 R.LKESEISHNENKMDFSSK.E * Jamie_phos_02_itms_5.04873.04873.3 3.4397 0.2373 100.0 2927.7544 2929.2312 11604.2 3 4.719 29.2 1 R.LKESEISHNENKMDFSSKEGQYKAK.I * Jamie_phos_01_itms_6.04270.04270.4 3.5735 0.1273 96.1 2928.9766 2929.2312 6395.2 5 3.593 25.7 1 R.LKESEISHNENKMDFSSKEGQYKAK.I * Jamie_phos_02_itms_9.07845.07845.4 6.9206 0.4349 100.0 4168.0967 4168.625 9694.0 1 6.625 24.0 2 R.LKESEISHNENKMDFSSKEGQYKAKIKELENNLER.L * Jamie_phos_01_itms_32.19574.19574.4 5.7542 0.3119 100.0 3233.7366 3234.6257 9590.3 1 5.882 37.0 3 K.SLLTELSNKETTIEKLSSEIENLDKELR.K * Jamie_phos_01_itms_32.19562.19562.3 4.3161 0.1174 97.8 3235.6743 3234.6257 7502.6 2 4.289 26.9 1 K.SLLTELSNKETTIEKLSSEIENLDKELR.K * Jamie_phos_01_itms_31.18886.18886.4 4.2591 0.2077 100.0 3364.0566 3362.7998 8738.2 1 4.023 26.2 1 K.SLLTELSNKETTIEKLSSEIENLDKELRK.T * Jamie_phos_02_itms_6.05901.05901.3 3.7434 0.2927 100.0 2731.3145 2732.0654 10480.1 32 5.051 28.4 2 K.TKFQYKFLDQNSDASTLEPTLRK.E * Jamie_phos_02_itms_22.15432.15432.3 5.0169 0.2579 100.0 2692.7344 2693.9243 8914.0 1 6.431 37.0 7 K.DANSQIQAYEEIISSNENALIELK.N * Jamie_phos_01_itms_33.19960.19960.2 3.8715 0.1479 100.0 2696.2922 2693.9243 6119.7 1 4.269 43.5 2 K.DANSQIQAYEEIISSNENALIELK.N * Jamie_phos_01_itms_35.21500.21500.3 4.8366 0.3473 100.0 3249.8943 3249.556 6432.6 1 5.728 27.7 1 K.DANSQIQAYEEIISSNENALIELKNELAK.T * Jamie_phos_05_itms_2.02887.02887.3 3.9745 0.3154 100.0 3111.6243 3110.451 8732.8 1 5.554 30.2 2 K.TKENYDAKIELEKKEKWAREEDLSR.L * Jamie_phos_01_itms_12.07674.07674.2 3.4931 0.203 100.0 1223.5122 1222.2604 9398.5 2 6.867 75.0 23 K.DAADCQAELTK.T * Jamie_phos_04_itms_10.13031.13031.3 3.4936 0.101 94.1 3180.0842 3179.5083 8979.8 1 3.525 26.9 1 K.ADYERELISNIEQTESLRVENSVLIEK.V * Jamie_phos_03_itms_13.11980.11980.4 4.7097 0.1605 100.0 3180.1365 3179.5083 7394.6 1 4.755 28.8 1 K.ADYERELISNIEQTESLRVENSVLIEK.V * Jamie_phos_01_itms_33.20195.20195.4 6.6202 0.3435 100.0 4785.6963 4784.3813 11846.9 1 5.456 19.6 2 R.TQTLSEKEYQCSAVIIDEFKDITKEVTQVNILKENNAILQK.S * Jamie_phos_01_itms_12.07617.07617.4 3.368 0.2427 100.0 3091.2566 3092.4392 4573.7 42 4.557 24.3 1 K.SLKNVTEKNREIYKQLNDRQEEISR.L * Jamie_phos_01_itms_18.10974.10974.4 4.0181 0.1564 98.7 3488.8564 3489.9167 7765.8 245 3.495 21.0 2 K.SLKNVTEKNREIYKQLNDRQEEISRLQR.D * Jamie_phos_02_itms_4.04606.04606.2 4.4749 0.4243 100.0 1718.4922 1717.917 9319.4 1 7.392 71.4 7 R.DLIQTKEQVSINSNK.I * Jamie_phos_01_itms_7.04435.04435.3 3.7868 0.2329 100.0 1719.2943 1717.917 6447.8 22 4.547 42.9 1 R.DLIQTKEQVSINSNK.I * Jamie_phos_02_itms_8.07226.07226.3 3.5269 0.0878 92.9 3512.7844 3512.9233 8733.3 1 4.008 29.5 2 R.DLIQTKEQVSINSNKILVYESEMEQCKQR.Y * Jamie_phos_02_itms_9.07393.07393.4 4.2835 0.1306 98.4 3513.9766 3512.9233 10521.3 1 4.309 25.0 1 R.DLIQTKEQVSINSNKILVYESEMEQCKQR.Y * Jamie_phos_02_itms_6.05906.05906.3 2.9997 0.1359 94.4 2812.4644 2814.106 9027.9 1 4.413 29.5 1 K.EQVSINSNKILVYESEMEQCKQR.Y * Jamie_phos_01_itms_8.05242.05242.2 3.5692 0.3826 100.0 1528.7722 1529.7114 8444.4 1 7.646 81.8 1 K.ILVYESEMEQCK.Q * Jamie_phos_02_itms_5.04800.04800.2 2.9039 0.2942 100.0 1813.5122 1814.0297 9131.8 3 6.36 50.0 2 K.ILVYESEMEQCKQR.Y * Jamie_phos_02_itms_4.04619.04619.4 3.5701 0.1674 98.3 3785.5366 3787.089 6858.9 80 4.235 17.7 2 K.KDIEKLTNEISDLKGKLS*SAENANADLENKFNR.L * Jamie_phos_02_itms_4.04615.04615.2 5.0017 0.4564 100.0 1893.4922 1894.0079 6854.7 1 8.037 68.8 8 K.LSSAENANADLENKFNR.L * Jamie_phos_01_itms_8.05471.05471.4 3.4324 0.0969 95.7 1900.2565 1900.1417 4163.4 3 3.996 37.8 2 K.AIKDKLEQDLHFENAK.V * Jamie_phos_01_itms_9.05556.05556.3 3.4223 0.0861 95.1 1900.5844 1900.1417 8665.0 42 3.438 38.3 1 K.AIKDKLEQDLHFENAK.V * Jamie_phos_02_itms_5.04822.04822.2 3.1486 0.3029 100.0 1587.1122 1587.7294 9101.9 1 6.273 62.5 1 K.DKLEQDLHFENAK.V * Jamie_phos_01_itms_6.04017.04017.4 3.6857 0.2266 100.0 2558.8564 2557.7393 9086.4 16 4.46 30.8 1 K.LKAHELQSEDVSRDHEKDTYR.T * Jamie_phos_01_itms_25.15383.15383.4 4.0855 0.1717 99.5 3664.4165 3665.9897 8810.0 1 4.847 24.7 1 K.STSSEAEYSKDIETLKKEWLKEYEDETLRR.I * Jamie_phos_01_itms_14.09087.09087.3 4.9038 0.3517 100.0 3267.3843 3267.487 9024.7 1 6.027 30.2 3 K.LKENAGSLTFLDNKGSGEDAEEELWNSPSK.G * Jamie_phos_01_itms_15.09137.09137.4 3.8081 0.0814 94.2 3268.9365 3267.487 7831.1 1 3.538 27.0 3 K.LKENAGSLTFLDNKGSGEDAEEELWNSPSK.G * Jamie_phos_01_itms_16.09914.09914.3 5.2555 0.3802 100.0 3345.8943 3347.487 6524.9 1 6.736 31.9 3 K.LKENAGSLTFLDNKGSGEDAEEELWNS*PSK.G * Jamie_phos_01_itms_16.09788.09788.3 4.8695 0.3708 100.0 3346.2544 3347.487 6665.7 1 5.317 31.0 2 K.LKENAGSLTFLDNKGSGEDAEEELWNSPS*K.G * Jamie_phos_01_itms_17.10382.10382.3 3.5529 0.1547 97.7 3346.6143 3347.487 4832.4 1 4.065 31.0 1 K.LKENAGSLTFLDNKGS*GEDAEEELWNSPSK.G * Jamie_phos_02_itms_10.08540.08540.3 4.1396 0.3098 100.0 3426.7744 3427.487 4502.5 30 5.205 23.3 2 K.LKENAGSLTFLDNKGS*GEDAEEELWNS*PSK.G * Jamie_phos_02_itms_9.07909.07909.4 5.056 0.3661 100.0 5002.6167 5004.3057 4432.4 32 5.931 16.7 3 K.LKENAGSLTFLDNKGSGEDAEEELWNS*PSKGNSERPSAVAGFINQK.N * Jamie_phos_02_itms_9.07905.07905.4 4.8566 0.3784 100.0 5003.3364 5004.3057 4201.2 2 5.09 17.4 1 K.LKENAGSLTFLDNKGSGEDAEEELWNSPS*KGNSERPSAVAGFINQK.N * Jamie_phos_01_itms_17.10472.10472.3 5.1161 0.3777 100.0 3025.5544 3026.1536 9001.3 1 6.399 31.5 4 K.ENAGSLTFLDNKGSGEDAEEELWNSPSK.G * Jamie_phos_02_itms_11.08616.08616.3 3.9888 0.3189 100.0 3106.1343 3106.1536 10327.6 70 4.678 22.2 2 K.ENAGSLTFLDNKGSGEDAEEELWNS*PSK.G * Jamie_phos_01_itms_13.08339.08339.4 3.9509 0.1292 97.7 3474.8965 3472.5767 8000.6 130 4.011 21.5 1 K.GSGEDAEEELWNSPS*KGNSERPSAVAGFINQK.N * Jamie_phos_02_itms_5.04894.04894.3 3.3739 0.2331 100.0 3328.6743 3328.5488 8021.9 10 4.709 20.8 2 K.NVKNDVSFNDSQSMVTNKENNIVDSSAAGNK.A * Jamie_phos_02_itms_5.04733.04733.2 3.7846 0.3776 100.0 1686.1122 1686.7906 8618.2 1 7.744 67.9 3 K.NDVSFNDSQSMVTNK.E * Jamie_phos_01_itms_8.05352.05352.3 3.9906 0.3278 100.0 2986.1042 2987.1382 6387.4 1 6.379 27.8 3 K.NDVSFNDSQSMVTNKENNIVDSSAAGNK.A * Jamie_phos_01_itms_28.17330.17330.4 4.4697 0.4069 100.0 4352.1367 4353.7944 8212.2 134 5.507 17.5 1 K.AIPTFSFGKPFFSSNTSSLQSFQNPFTASQSNINTNAPLR.T * Jamie_phos_01_itms_28.17276.17276.3 6.2498 0.5615 100.0 4352.994 4353.7944 7364.7 1 9.874 26.9 1 K.AIPTFSFGKPFFSSNTSSLQSFQNPFTASQSNINTNAPLR.T * Jamie_phos_01_itms_29.17762.17762.4 5.4683 0.3936 100.0 5547.4165 5547.203 7330.7 1 6.502 18.0 1 K.AIPTFSFGKPFFSSNTSSLQSFQNPFTASQSNINTNAPLRTLNIQPEVAVK.A * Jamie_phos_02_itms_5.05271.05271.2 3.2031 0.2372 100.0 1283.1322 1283.5107 6856.7 1 6.256 72.7 1 R.TLNIQPEVAVKA.A * Jamie_phos_02_itms_8.06722.06722.3 4.6905 0.3251 100.0 2054.3342 2054.1777 8348.5 1 5.998 44.7 3 K.AAINFSNVTDLTNNSTDGAK.I * Jamie_phos_01_itms_13.08075.08075.2 4.3247 0.2346 100.0 2056.112 2054.1777 8635.6 1 5.421 52.6 13 K.AAINFSNVTDLTNNSTDGAK.I * Jamie_phos_01_itms_16.09932.09932.3 4.0662 0.2892 100.0 2970.3542 2971.2048 6635.2 2 5.601 26.8 6 K.AAINFSNVTDLTNNSTDGAKITEIGSTSK.R * Jamie_phos_02_itms_7.06177.06177.4 3.1864 0.1086 92.8 4568.8965 4570.9224 6937.5 13 3.822 15.5 1 K.AAINFSNVTDLTNNSTDGAKITEIGSTSKRPIESGTSSDPDTKK.V * Jamie_phos_01_itms_12.07802.07802.2 3.4885 0.471 100.0 1982.0322 1983.099 5615.8 1 7.763 58.3 3 A.AINFSNVTDLTNNSTDGAK.I YKL060C 7 22 46.8% 359 39621 5.8 U FBA1 SGDID:S000001543, Chr XI from 327131-326052, reverse complement, Verified ORF, "Fructose 1,6-bisphosphate aldolase, a cytosolic enzyme required for glycolysis and gluconeogenesis; catalyzes the conversion of fructose 1,6 bisphosphate into two 3-carbon products: glyceraldehyde-3-phosphate and dihydroxyacetone phosphate" * Jamie_phos_04_itms_6.09702.09702.2 4.0807 0.3157 100.0 1864.7322 1864.1082 8305.0 1 6.77 59.4 3 K.TGVIVGEDVHNLFTYAK.E * Jamie_phos_02_itms_10.08446.08446.4 3.8967 0.1959 100.0 4350.7764 4349.85 7993.9 1 4.069 18.7 1 R.DSKSPIILQTSNGGAAYFAGKGISNEGQNASIKGAIAAAHYIR.S * Jamie_phos_02_itms_6.05661.05661.3 3.3849 0.2048 99.3 2242.9143 2242.4995 7506.2 1 5.77 39.3 4 K.GISNEGQNASIKGAIAAAHYIR.S * Jamie_phos_04_itms_6.09880.09880.3 4.9126 0.3901 100.0 3235.4343 3235.423 11270.2 1 7.53 27.8 4 K.EHGEPLFSSHMLDLSEETDEENISTCVK.Y * Jamie_phos_02_itms_9.07945.07945.4 3.3461 0.2117 99.3 3236.0566 3235.423 6394.7 2 5.001 22.8 1 K.EHGEPLFSSHMLDLSEETDEENISTCVK.Y * Jamie_phos_04_itms_13.14270.14270.4 4.8703 0.398 100.0 5039.8564 5040.5103 8210.9 1 6.052 17.8 8 R.MAAMDQWLEMEIGITGGEEDGVNNENADKEDLYTKPEQVYNVYK.A * Jamie_phos_02_itms_9.07543.07543.4 4.2278 0.0536 93.7 3935.9365 3932.348 11016.8 5 3.006 20.5 1 R.EQVGCKEEKPLFLVFHGGSGSTVQEFHTGIDNGVVK.V YPL131W 15 82 46.8% 297 33715 6.8 U RPL5 SGDID:S000006052, Chr XVI from 303120-304013, Verified ORF, "Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly" * Jamie_phos_01_itms_25.15250.15250.4 5.06 0.4111 100.0 4666.0566 4661.136 7038.3 1 6.203 17.5 4 L.LIARRT*LQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFK.V * Jamie_phos_02_itms_15.11007.11007.4 3.9848 0.2493 100.0 3970.2566 3971.3638 9192.4 105 4.282 18.1 1 R.TLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFK.V * Jamie_phos_05_itms_8.13332.13332.3 3.5379 0.2808 100.0 3128.6042 3128.3271 9059.8 1 4.865 26.9 2 K.LGLDETYKGVEEVEGEYELTEAVEDGPR.P * Jamie_phos_03_itms_14.12269.12269.3 3.5378 0.2854 92.6 3225.4143 3225.4438 9148.4 1 5.317 26.8 1 K.LGLDETYKGVEEVEGEYELTEAVEDGPRP.F * Jamie_phos_05_itms_11.15220.15220.3 4.0937 0.2776 100.0 3372.8342 3372.6204 7581.2 1 5.561 25.0 1 K.LGLDETYKGVEEVEGEYELTEAVEDGPRPF.K * Jamie_phos_01_itms_25.15250.15250.3 7.7149 0.4959 100.0 3499.7944 3500.7944 7038.3 1 8.649 36.7 29 K.LGLDETYKGVEEVEGEYELTEAVEDGPRPFK.V * Jamie_phos_04_itms_11.13094.13094.4 6.2358 0.4292 100.0 3500.0964 3500.7944 5391.1 1 7.463 24.4 21 K.LGLDETYKGVEEVEGEYELTEAVEDGPRPFK.V * Jamie_phos_05_itms_15.17306.17306.4 3.2405 0.0907 90.8 4541.9365 4543.0405 10508.9 4 3.322 18.8 1 K.LGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQR.T * Jamie_phos_04_itms_7.10972.10972.3 2.5252 0.1424 90.6 2581.2544 2580.7644 4835.3 4 3.615 28.4 1 K.GVEEVEGEYELTEAVEDGPRPFK.V * Jamie_phos_02_itms_15.11360.11360.4 3.6639 0.1737 98.5 4250.2563 4250.6704 9522.5 31 3.762 17.6 4 R.VFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLR.S * Jamie_phos_01_itms_28.17504.17504.2 5.2346 0.3942 100.0 2095.4521 2094.285 5637.6 1 7.306 75.0 4 R.FPGWDFETEEIDPELLR.S * Jamie_phos_01_itms_33.20200.20200.3 6.0116 0.3868 100.0 3343.5544 3343.602 8256.6 1 7.068 32.4 7 R.SYIFGGHVSQYMEELADDDEERFSELFK.G * Jamie_phos_01_itms_24.14962.14962.2 4.6932 0.4896 100.0 2384.5923 2385.4565 8922.3 1 9.692 59.5 1 K.GYLADDIDADSLEDIYTSAHEA.I * Jamie_phos_01_itms_25.15220.15220.2 3.3191 0.4361 100.0 2653.0723 2654.8035 8950.8 1 8.159 41.3 1 K.GYLADDIDADSLEDIYTSAHEAIR.A * Jamie_phos_01_itms_25.15260.15260.3 3.7245 0.2896 100.0 2653.4644 2654.8035 5867.0 1 5.768 34.8 4 K.GYLADDIDADSLEDIYTSAHEAIR.A YBL003C 2 3 44.7% 132 13989 10.7 U HTA2 SGDID:S000000099, Chr II from 235795-235397, reverse complement, Verified ORF, "One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p " YDR225W 2 3 44.7% 132 13989 10.7 U HTA1 SGDID:S000002633, Chr IV from 915524-915922, Verified ORF, "One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p " Jamie_phos_01_itms_57.34586.34586.3 5.3077 0.413 100.0 2948.7544 2947.4014 6961.3 1 7.72 34.8 2 R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D Jamie_phos_01_itms_26.15776.15776.3 5.28 0.3736 100.0 3239.2444 3239.6995 8708.5 1 5.852 27.6 1 R.NDDELNKLLGNVTIAQGGVLPNIHQNLLPK.K YDR382W 1 1 43.6% 110 11050 4.1 U RPP2B SGDID:S000002790, Chr IV from 1239482-1239814, Verified ORF, "Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm" * Jamie_phos_01_itms_24.14532.14532.3 3.534 0.1425 97.4 4688.784 4689.7534 7318.7 7 4.015 16.5 1 K.FATVPTGGASSAAAGAAGAAAGGDAAEEEKEEEAKEES*DDDMGFGLFD.- YJR053W 15 29 40.1% 574 66087 5.9 U BFA1 SGDID:S000003814, Chr X from 533941-535665, Verified ORF, "Component of the GTPase-activating Bfa1p-Bub2p complex involved in multiple cell cycle checkpoint pathways that control exit from mitosis" * Jamie_phos_01_itms_26.15977.15977.3 4.5944 0.3387 100.0 4226.5444 4228.324 10184.9 1 7.175 22.8 1 K.QADDDQDMEVDQDDEFLNDFQEFQNKKDDFDDAIK.T * Jamie_phos_01_itms_15.09537.09537.4 4.9727 0.3314 100.0 2856.0166 2854.192 9597.7 1 6.057 29.7 4 R.TGPFKNDIFAEEFDRKLSLEDKPR.L * Jamie_phos_01_itms_10.06688.06688.2 1.765 0.171 96.8 1610.4122 1611.7585 7883.9 17 3.483 45.8 1 K.RKLSNSVTS*RNLR.S * Jamie_phos_02_itms_6.05376.05376.3 2.9862 0.1242 93.7 2557.6143 2557.7332 9033.3 365 3.989 26.2 1 R.EDQREFNYKIDNDTQDTILAK.F * Jamie_phos_02_itms_25.17410.17410.4 5.981 0.4177 100.0 5579.5767 5579.61 5340.1 1 5.855 16.7 4 K.IDNDTQDTILAKFS*S*DDEGDFLTGFEELEGEAIDETISSNDKESADHPR.F * Jamie_phos_02_itms_23.16137.16137.3 4.6984 0.4444 100.0 4169.9346 4171.1685 6316.1 1 6.848 22.9 1 K.FS*SDDEGDFLTGFEELEGEAIDETISSNDKESADHPR.F * Jamie_phos_01_itms_34.20708.20708.3 5.8493 0.5659 100.0 4170.474 4171.1685 5991.4 1 9.076 23.6 2 K.FSS*DDEGDFLTGFEELEGEAIDETISSNDKESADHPR.F * Jamie_phos_01_itms_34.20726.20726.4 6.2884 0.413 100.0 4173.8164 4171.1685 6368.2 1 6.657 24.1 2 K.FSS*DDEGDFLTGFEELEGEAIDETISSNDKESADHPR.F * Jamie_phos_01_itms_18.11421.11421.4 3.5905 0.2238 100.0 3359.5366 3359.8533 9712.9 58 4.554 21.3 1 K.SSSSLPLKISPAQYDIVKHDELLTPGLHRR.Q * Jamie_phos_02_itms_6.05823.05823.2 2.4935 0.1272 96.9 1885.5122 1886.1766 8471.7 6 4.75 50.0 2 R.NQKVIGNMILDEQNLR.W * Jamie_phos_02_itms_5.04803.04803.4 3.7505 0.225 100.0 3715.9766 3720.8186 7348.0 185 4.57 17.2 1 R.SSSPFLRS*KS*QVNTPFVSNDNDGVYQSTAAQAR.L * Jamie_phos_01_itms_7.04702.04702.3 5.3537 0.4551 100.0 2785.7944 2785.9438 8365.9 1 8.443 30.0 3 R.SKSQVNTPFVSNDNDGVYQSTAAQAR.L * Jamie_phos_01_itms_8.05310.05310.3 3.3331 0.1651 97.8 2864.2744 2865.9438 10353.0 4 4.154 25.0 1 R.SKS*QVNTPFVSNDNDGVYQSTAAQAR.L * Jamie_phos_03_itms_11.10464.10464.3 3.4321 0.1527 97.7 2355.8643 2356.5146 11066.9 15 4.149 31.2 1 R.DETIISVDEETIMDESTVNSK.R * Jamie_phos_04_itms_8.11585.11585.2 2.4048 0.1618 98.4 2358.652 2356.5146 7153.7 1 4.32 37.5 4 R.DETIISVDEETIMDESTVNSK.R YDR356W 36 79 38.3% 944 111782 7.1 U SPC110 SGDID:S000002764, Chr IV from 1186098-1188932, Verified ORF, "Inner plaque spindle pole body (SPB) component, ortholog of human kendrin; involved in connecting nuclear microtubules to SPB; interacts with Tub4p-complex and calmodulin; phosphorylated by Mps1p in cell cycle-dependent manner" * Jamie_phos_01_itms_28.17258.17258.3 4.7282 0.1754 100.0 3046.0745 3045.1536 8351.2 1 5.821 32.0 1 R.SIDDTIDST*RLFSEASQFDDSFPEIK.A * Jamie_phos_01_itms_31.19257.19257.3 3.6719 0.2147 100.0 3124.1042 3125.1536 6828.6 39 4.041 25.0 1 R.S*IDDTIDST*RLFSEASQFDDSFPEIK.A * Jamie_phos_01_itms_30.18669.18669.3 4.5692 0.0888 97.8 3125.9343 3125.1536 9748.3 1 4.57 33.0 1 R.SIDDT*IDST*RLFSEASQFDDSFPEIK.A * Jamie_phos_01_itms_28.17244.17244.3 3.5539 0.3093 100.0 3877.2844 3878.1113 4652.1 43 4.969 20.5 1 R.SIDDTIDSTRLFSEASQFDDSFPEIKANIPPS*PR.S * Jamie_phos_01_itms_24.14996.14996.4 4.7051 0.2788 100.0 4722.3765 4722.0063 4201.0 151 4.507 18.3 2 R.SIDDTIDSTRLFSEASQFDDSFPEIKANIPPS*PRSGNVDKSR.K * Jamie_phos_01_itms_24.15092.15092.2 3.4494 0.2542 100.0 1941.2722 1941.0148 8506.7 1 5.758 60.0 1 R.LFSEAS*QFDDSFPEIK.A * Jamie_phos_02_itms_13.10010.10010.2 3.2786 0.2386 100.0 1942.4521 1941.0148 10840.7 1 4.919 53.3 4 R.LFSEASQFDDS*FPEIK.A * Jamie_phos_01_itms_28.17046.17046.2 3.3289 0.1449 99.5 2022.0322 2021.0148 6371.7 1 4.38 63.3 2 R.LFSEAS*QFDDS*FPEIK.A * Jamie_phos_02_itms_6.05514.05514.3 4.2975 0.3643 100.0 2367.6543 2366.633 4877.3 1 6.439 40.8 1 R.HITYANSDISNKELYINEIK.S * Jamie_phos_01_itms_9.05848.05848.3 3.956 0.3421 100.0 2669.3643 2670.76 7179.7 3 5.718 28.6 1 K.EKNDTLNNYDTLEEETDDLKNR.L * Jamie_phos_01_itms_17.10890.10890.3 4.6969 0.2843 100.0 2798.0645 2799.2407 8172.5 1 5.949 29.3 1 R.KLKTVKDQVLELENNSDVQSLKLR.S * Jamie_phos_01_itms_16.10077.10077.4 5.4135 0.4168 100.0 2800.5764 2799.2407 9436.1 1 6.479 29.0 7 R.KLKTVKDQVLELENNSDVQSLKLR.S * Jamie_phos_01_itms_14.08666.08666.3 3.2371 0.1323 95.9 2427.9844 2429.7332 8607.4 1 4.053 32.5 1 K.TVKDQVLELENNSDVQSLKLR.S * Jamie_phos_01_itms_11.06884.06884.2 5.3645 0.4359 100.0 1831.8922 1831.9744 10653.2 1 8.338 80.0 6 K.DQVLELENNSDVQSLK.L * Jamie_phos_01_itms_23.14355.14355.3 4.9181 0.3343 100.0 2048.1843 2048.316 7280.9 1 6.713 50.0 2 R.SKEDELKNLMNELNELK.S * Jamie_phos_01_itms_23.14416.14416.2 4.487 0.289 100.0 2048.4722 2048.316 8566.3 1 6.015 62.5 2 R.SKEDELKNLMNELNELK.S * Jamie_phos_01_itms_26.16052.16052.4 6.5927 0.4309 100.0 3567.8564 3568.932 9798.9 1 8.191 30.5 3 R.SKEDELKNLMNELNELKSNAEEKDTQLEFK.K * Jamie_phos_01_itms_25.15651.15651.4 6.6954 0.359 100.0 4208.8965 4209.6724 9171.8 1 6.951 23.0 2 R.SKEDELKNLMNELNELKSNAEEKDTQLEFKKNELR.K * Jamie_phos_01_itms_22.13868.13868.4 3.4906 0.1156 95.2 3380.1765 3379.7668 6381.6 1 3.537 23.5 1 K.NLMNELNELKSNAEEKDTQLEFKKNELR.K * Jamie_phos_02_itms_6.05642.05642.3 3.5936 0.2472 100.0 3106.4043 3105.4875 10073.2 3 4.955 26.0 1 R.TNELNELKIKSDEMDLQLKQKQNESK.R * Jamie_phos_02_itms_6.05758.05758.3 3.0226 0.1857 97.8 3262.4043 3261.675 8462.9 1 4.433 26.9 1 R.TNELNELKIKSDEMDLQLKQKQNESKR.L * Jamie_phos_01_itms_8.05050.05050.2 3.4762 0.3101 100.0 1261.6921 1262.3997 7852.4 1 6.608 80.0 1 K.IAELEEEISTK.N * Jamie_phos_01_itms_8.05484.05484.3 5.5328 0.3159 100.0 2398.2244 2399.5676 7025.2 1 6.215 47.4 3 K.DIEEYKESAKDSEDKIEELK.I * Jamie_phos_01_itms_8.05452.05452.4 3.6729 0.193 100.0 2398.6965 2399.5676 6097.1 5 5.154 36.8 2 K.DIEEYKESAKDSEDKIEELK.I * Jamie_phos_01_itms_17.10551.10551.4 6.4286 0.4489 100.0 3377.7366 3375.7551 10393.1 1 7.418 28.6 4 R.SKDIKQKDEQISDLTQNLKLQEDEISSLK.S * Jamie_phos_01_itms_7.04859.04859.3 2.8916 0.1325 96.8 1390.0443 1390.5358 6368.0 50 4.103 47.5 1 R.DSQKIEIENWK.R * Jamie_phos_01_itms_7.04882.04882.2 2.7521 0.1811 100.0 1390.0521 1390.5358 6866.1 2 4.616 75.0 1 R.DSQKIEIENWK.R * Jamie_phos_01_itms_7.04399.04399.3 2.9736 0.1693 98.4 1546.4343 1546.7233 5973.3 3 4.559 50.0 1 R.DSQKIEIENWKR.K * Jamie_phos_02_itms_8.07060.07060.4 3.2794 0.1341 95.6 3836.2166 3836.2542 8392.8 1 4.067 21.5 1 K.RKYNNLSLENDRLLTEKESASDKEREISILNR.K * Jamie_phos_02_itms_5.04857.04857.3 4.6297 0.4441 100.0 2725.3145 2725.9292 9569.8 1 7.778 34.1 1 K.YNNLSLENDRLLTEKESASDKER.E * Jamie_phos_01_itms_8.05167.05167.4 3.8056 0.1075 96.4 2725.7366 2727.1077 7522.0 1 5.024 28.3 3 R.KLDEMDKEKWNLQESKEKYKR.E * Jamie_phos_01_itms_14.08764.08764.4 2.635 0.1312 90.8 2752.4165 2750.0842 4705.3 26 3.75 27.8 1 R.IKKNYLSEITSLQEENRRLEER.L * Jamie_phos_01_itms_15.09530.09530.2 3.2244 0.406 100.0 1697.1522 1696.8113 6703.2 1 6.292 61.5 1 K.NYLSEITSLQEENR.R * Jamie_phos_01_itms_13.08462.08462.3 2.6416 0.1888 96.5 2204.1843 2205.4473 7325.6 3 3.726 35.3 1 R.RKDNDSTMQLNDIISYYK.L * Jamie_phos_02_itms_7.06366.06366.3 2.831 0.157 94.9 3353.8442 3353.5425 10196.3 98 4.012 23.1 1 R.KGEHSLNISLPDDDELDRDYYNSHVYTR.Y * Jamie_phos_01_itms_14.08972.08972.4 6.2902 0.1373 100.0 3355.0166 3353.5425 4952.2 1 5.638 34.0 15 R.KGEHSLNISLPDDDELDRDYYNSHVYTR.Y YOR210W 1 1 37.1% 70 8278 7.8 U RPB10 SGDID:S000005736, Chr XV from 738320-738532, Verified ORF, "RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III" * Jamie_phos_01_itms_27.16551.16551.3 3.9109 0.0821 94.9 2980.6143 2981.2427 7629.8 4 4.304 25.0 1 K.VVGDKWESYLNLLQEDELDEGTALSR.L YCL042W 1 1 35.3% 119 13360 10.6 U YCL042W SGDID:S000000547, Chr III from 50584-50943, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_31.27356.27356.4 3.3483 0.1412 95.9 4666.6567 4667.352 11674.9 51 4.317 15.9 1 K.ILDAALAPRIISGVPTDGQPLSGGPLSWAWCHTT*LKRWALMK.T YNL225C 15 34 34.9% 581 67400 6.0 U CNM67 SGDID:S000005169, Chr XIV from 224470-222725, reverse complement, Verified ORF, "Component of the spindle pole body outer plaque; required for spindle orientation and mitotic nuclear migration" * Jamie_phos_01_itms_27.16466.16466.4 4.315 0.279 100.0 5026.4565 5028.3047 4947.4 2 5.452 17.5 1 M.TDFDLMNFPFHERLDS*PVS*ENGEIKDGEPIPQNWLNENHVGK.S * Jamie_phos_01_itms_30.18496.18496.2 2.9046 0.2535 100.0 2420.2322 2420.6936 7991.7 1 5.87 40.0 2 K.SILPLFVNPEDVINCNFSNAR.D * Jamie_phos_01_itms_30.18363.18363.3 3.5015 0.2599 100.0 2421.0842 2420.6936 8304.8 1 4.978 33.8 1 K.SILPLFVNPEDVINCNFSNAR.D * Jamie_phos_01_itms_33.20297.20297.2 2.5771 0.1491 98.5 2499.9321 2500.6936 9610.0 25 4.36 30.0 1 K.SILPLFVNPEDVINCNFS*NAR.D * Jamie_phos_01_itms_6.04196.04196.2 2.4293 0.3161 100.0 1893.9122 1894.8632 4233.1 25 4.878 42.9 1 R.NTS*YQES*PGLQERPK.N * Jamie_phos_01_itms_13.08130.08130.4 3.1489 0.0788 92.7 1777.2166 1776.901 6291.3 252 4.225 32.1 1 K.NEKDKS*PIGTDVHKK.D * Jamie_phos_01_itms_7.04381.04381.3 4.0041 0.3158 100.0 2885.7844 2886.9226 7341.8 1 5.918 29.8 1 R.ANEQASAQPTDEHTSPDISIEDCNGAK.I * Jamie_phos_03_itms_8.08942.08942.4 4.3958 0.2328 100.0 4466.0566 4465.711 6798.7 1 4.777 19.2 2 R.ANEQASAQPTDEHTSPDISIEDCNGAKIFLQNSLSKEDFR.M * Jamie_phos_01_itms_12.07644.07644.2 3.4658 0.2191 100.0 1308.7522 1308.5786 7355.7 1 6.01 90.0 1 R.MLENVILGYQK.K * Jamie_phos_02_itms_6.05751.05751.2 2.5741 0.1376 98.3 1436.0122 1436.7527 8218.5 31 3.835 54.5 1 R.MLENVILGYQKK.V * Jamie_phos_02_itms_7.06297.06297.2 2.6451 0.3475 100.0 1328.4122 1327.5236 4502.0 1 6.035 72.7 6 K.HTALLSLTDSLR.K * Jamie_phos_01_itms_39.23876.23876.3 6.1702 0.5111 100.0 2906.0942 2906.2585 10812.2 1 9.037 33.3 2 R.KAELFEIPIGILFFDLYDSEENSSK.L * Jamie_phos_01_itms_38.23283.23283.4 6.4366 0.3765 100.0 3883.7766 3883.387 6906.3 1 6.396 28.1 7 R.KAELFEIPIGILFFDLYDSEENSSKLDHILQEK.Y * Jamie_phos_01_itms_38.23244.23244.3 4.4517 0.3267 100.0 3885.3843 3883.387 7432.3 1 5.588 25.0 1 R.KAELFEIPIGILFFDLYDSEENSSKLDHILQEK.Y * Jamie_phos_02_itms_5.05175.05175.2 3.7349 0.3532 100.0 1525.8322 1525.6245 7838.1 1 5.959 70.8 6 K.GFLCASQQEELSR.I YLR146W-A 2 2 33.9% 62 7078 4.8 U YLR146W-A SGDID:S000113566, Chr XII from 433871-434059, Uncharacterized ORF, "Putative protein of unknown function" * Jamie_phos_01_itms_29.17906.17906.2 3.9019 0.3166 100.0 1733.6921 1733.0386 9346.9 1 5.488 73.1 1 R.MLQNEIQQLFAQLR.D * Jamie_phos_01_itms_27.16900.16900.3 4.3352 0.2809 100.0 2548.7344 2547.8918 7807.6 1 5.658 35.0 1 R.MLQNEIQQLFAQLRDTNSQIR.C YAL038W 10 22 31.6% 500 54545 7.7 U CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration" * Jamie_phos_01_itms_9.05897.05897.2 2.8056 0.4086 100.0 1345.4122 1345.5388 9535.9 3 6.795 54.2 2 R.LTSLNVVAGSDLR.R * Jamie_phos_02_itms_9.07693.07693.3 4.4639 0.4079 100.0 3281.5144 3282.7021 9628.7 1 7.26 27.8 1 T.DDKYAKACDDKIMYVDYKNITKVISAGR.I * Jamie_phos_05_itms_13.16325.16325.2 3.332 0.3463 100.0 2266.5122 2267.581 10908.8 1 6.193 57.9 2 R.IIYVDDGVLSFQVLEVVDDK.T * Jamie_phos_04_itms_12.14223.14223.3 3.0493 0.1966 97.8 2837.9644 2837.3264 4780.8 1 3.864 28.1 1 R.IIYVDDGVLSFQVLEVVDDKTLKVK.A * Jamie_phos_03_itms_6.07550.07550.3 2.4081 0.1538 90.7 2482.7644 2482.7502 3227.5 72 3.907 27.3 1 K.GVNLPGTDVDLPALSEKDKEDLR.F * Jamie_phos_02_itms_7.06353.06353.3 3.7796 0.121 97.7 2186.7544 2186.4705 4022.7 1 4.605 38.2 4 R.TANDVLTIREVLGEQGKDVK.I * Jamie_phos_01_itms_8.05194.05194.2 3.0308 0.408 100.0 1316.5922 1316.5406 5386.0 1 7.267 70.8 3 K.AIIVLSTSGTTPR.L * Jamie_phos_01_itms_26.15801.15801.2 2.8877 0.3873 100.0 2568.672 2570.8174 7518.1 17 6.619 31.0 1 R.GVFPFVFEKEPVSDWTDDVEAR.I * Jamie_phos_01_itms_25.15714.15714.3 5.0456 0.1788 100.0 2574.8044 2570.8174 6910.9 1 3.913 48.8 6 R.GVFPFVFEKEPVSDWTDDVEAR.I * Jamie_phos_02_itms_4.04549.04549.2 1.7346 0.1341 92.2 1341.9521 1342.4514 7903.4 116 4.257 46.2 1 K.AGAGHSNTLQVSTV.- YMR116C 6 11 29.5% 319 34805 6.2 U ASC1 SGDID:S000004722, Chr XIII from 500687-500151,499877-499455, reverse complement, Verified ORF, "WD repeat protein (G-beta like protein) involved in translation regulation; required for repression of Gcn4p activity in the absence of amino-acid starvation; core component of the ribosome; ortholog of mammalian RACK1" * Jamie_phos_02_itms_8.06843.06843.3 4.7112 0.3443 100.0 2404.4644 2404.7715 9650.9 1 7.612 41.2 2 R.DKTLISWKLTGDDQKFGVPVR.S * Jamie_phos_01_itms_9.05714.05714.2 2.1321 0.1072 94.2 1439.7722 1439.5675 8085.4 4 3.652 59.1 1 R.LWDVATGETYQR.F * Jamie_phos_02_itms_5.04718.04718.3 3.4761 0.3301 100.0 2187.3245 2188.3533 6956.4 7 5.685 31.2 2 R.VVPNEKADDDSVTIISAGNDK.M * Jamie_phos_02_itms_5.04708.04708.2 3.4228 0.3754 100.0 2187.7122 2188.3533 6807.5 1 7.275 42.5 4 R.VVPNEKADDDSVTIISAGNDK.M * Jamie_phos_01_itms_21.13100.13100.2 2.1938 0.3163 100.0 1361.2922 1361.5989 5914.5 3 5.646 63.6 1 K.DGEIMLWNLAAK.K * Jamie_phos_02_itms_14.10671.10671.3 3.0413 0.1252 93.3 2961.7444 2962.248 8078.0 235 4.07 20.4 1 K.AAEPHAVSLAWSADGQTLFAGYTDNVIR.V YNL064C 7 20 28.6% 409 44671 6.3 U YDJ1 SGDID:S000005008, Chr XIV from 507098-505869, reverse complement, Verified ORF, "Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein translocation across membranes; member of the DnaJ family" * Jamie_phos_01_itms_37.22856.22856.3 5.5506 0.5729 100.0 4461.6543 4461.7227 5007.4 1 10.097 26.7 1 R.DIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGGAQRPR.G * Jamie_phos_02_itms_9.07612.07612.3 4.2127 0.4043 100.0 2174.2144 2174.462 7700.6 2 6.848 37.5 3 R.GKDIKHEISASLEELYKGR.T * Jamie_phos_02_itms_6.05652.05652.2 2.7694 0.3158 100.0 1420.0122 1419.5743 6129.1 1 5.662 68.2 3 K.HEISASLEELYK.G * Jamie_phos_01_itms_52.31745.31745.3 6.9724 0.4542 100.0 3720.7444 3720.0837 9305.7 1 9.318 32.6 1 K.RDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLK.V * Jamie_phos_02_itms_39.25776.25776.3 5.2675 0.461 100.0 3562.7344 3563.8965 4150.5 1 8.095 29.7 8 R.DGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLK.V * Jamie_phos_02_itms_38.25171.25171.3 3.6279 0.3846 100.0 3449.6643 3448.8079 7446.6 1 5.989 25.8 1 D.GDDLVYEAEIDLLTAIAGGEFALEHVSGDWLK.V * Jamie_phos_01_itms_12.07856.07856.3 4.1191 0.3886 100.0 2213.0942 2213.418 8489.3 1 6.163 40.3 3 K.KATVDECVLADFDPAKYNR.T YEL003W 1 1 28.5% 123 14285 8.0 U GIM4 SGDID:S000000729, Chr V from 148227-148598, Verified ORF, "Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic chaperonin and transfers target proteins to it" * Jamie_phos_04_itms_38.29730.29730.4 2.9346 0.1374 93.8 4066.7766 4070.4817 11895.4 19 3.644 19.1 1 R.KCY*RMIGGALVESDVQTSLPILETKKENIEGTIS*K.M YFL067W 1 1 26.9% 175 16473 6.8 U YFL067W SGDID:S000001827, Chr VI from 836-1363, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_45.27147.27147.4 4.6658 0.2629 100.0 4543.4565 4545.971 10935.7 126 4.739 15.6 1 -.MESIILSIAIFIGVLLGTSVGAGS*GSSISPDVDAGSGSRTSPDVDAG.S YHL015W 1 1 26.4% 121 13907 9.5 U RPS20 SGDID:S000001007, Chr VIII from 75409-75774, Verified ORF, "Protein component of the small (40S) ribosomal subunit; overproduction suppresses mutations affecting RNA polymerase III-dependent transcription; has similarity to E. coli S10 and rat S20 ribosomal proteins" * Jamie_phos_02_itms_10.08014.08014.4 3.0734 0.1095 92.0 3658.8564 3663.2156 7554.3 205 3.012 19.4 1 K.QLENVSSNIVKNAEQHNLVKKGPVRLPT*KVLK.I YHR174W 11 40 25.2% 437 46914 6.0 U ENO2 SGDID:S000001217, Chr VIII from 451327-452640, Verified ORF, "Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose" Jamie_phos_02_itms_7.06264.06264.4 2.6625 0.1778 95.6 2584.0166 2584.8455 2937.6 8 3.919 28.0 1 R.SVYDSRGNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_12.07490.07490.3 5.7877 0.2107 100.0 2587.8245 2584.8455 9810.2 1 4.525 37.5 20 R.SVYDSRGNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_7.04854.04854.2 2.8825 0.2473 100.0 1416.2122 1417.556 7359.8 2 7.513 58.3 2 R.GNPTVEVELTTEK.G Jamie_phos_01_itms_10.06623.06623.2 2.0883 0.0976 91.4 1877.8322 1877.1045 7296.2 59 4.522 40.6 1 R.GNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_32.19614.19614.3 7.2078 0.5495 100.0 2985.4143 2986.269 7098.1 1 9.655 41.3 2 K.RYPIVSIEDPFAEDDWEAWSHFFK.T Jamie_phos_01_itms_34.20802.20802.3 6.5457 0.4909 100.0 2831.4844 2830.0815 5502.3 1 8.679 43.2 1 R.YPIVSIEDPFAEDDWEAWSHFFK.T * Jamie_phos_01_itms_15.09557.09557.2 4.7534 0.4618 100.0 1856.1721 1856.0862 10456.9 1 8.602 73.5 5 K.TAGIQIVADDLTVTNPAR.I Jamie_phos_05_itms_13.16240.16240.2 4.1058 0.4771 100.0 1822.2522 1823.0099 9743.3 1 9.306 65.6 2 R.SGETEDTFIADLVVGLR.T * Jamie_phos_02_itms_13.09898.09898.4 3.7529 0.2386 100.0 3211.0166 3210.5737 9761.2 145 4.552 23.5 1 K.LNQLLRIEEELGDKAVYAGENFHHGDKL.- * Jamie_phos_02_itms_5.05182.05182.3 5.098 0.4301 100.0 2471.9644 2472.6733 9380.7 1 8.645 36.9 4 R.IEEELGDKAVYAGENFHHGDKL.- * Jamie_phos_01_itms_8.05326.05326.4 3.8818 0.2306 100.0 2473.8564 2472.6733 4655.5 26 4.132 28.6 1 R.IEEELGDKAVYAGENFHHGDKL.- YOR373W 25 81 24.4% 851 94104 7.0 U NUD1 SGDID:S000005900, Chr XV from 1036830-1039385, Verified ORF, "Component of the spindle pole body outer plaque, required for exit from mitosis" * Jamie_phos_03_itms_7.08489.08489.3 2.8203 0.2613 99.6 3528.9543 3528.6807 6684.9 32 5.223 21.6 2 K.VFKEYES*NHDFQDSNFTSQVVEPAISDSVK.K * Jamie_phos_01_itms_7.04396.04396.3 3.6651 0.4074 100.0 2020.1344 2020.1655 4363.3 32 7.381 31.9 2 K.VPSGFSGTTATSHQEAQWK.Q * Jamie_phos_02_itms_4.04588.04588.2 3.8094 0.3873 100.0 2020.4922 2020.1655 8507.6 1 6.317 50.0 3 K.VPSGFSGTTATSHQEAQWK.Q * Jamie_phos_01_itms_7.04840.04840.3 3.0823 0.3114 100.0 2099.4543 2100.1655 5249.2 212 5.206 30.6 1 K.VPSGFS*GTTATSHQEAQWK.Q * Jamie_phos_01_itms_23.14486.14486.3 2.807 0.1911 96.5 3552.6243 3553.9507 8105.8 47 4.437 18.6 1 K.QYFPGIGSGGGTNFGGAVGTANKVPESDLIVSDLVK.D * Jamie_phos_01_itms_10.06548.06548.2 2.7651 0.2687 100.0 1479.4521 1480.661 8268.3 6 4.887 58.3 1 K.DLSGVLETNTFKR.H * Jamie_phos_01_itms_24.14834.14834.3 3.7289 0.1897 99.3 2862.4744 2862.8909 6088.3 1 5.905 34.6 1 K.VSSSFSDDS*DSGPAAEAHDVFDGILQK.Q * Jamie_phos_01_itms_24.14960.14960.3 3.7637 0.3665 100.0 2863.0444 2862.8909 6799.9 1 5.646 28.8 2 K.VSSSFSDDSDS*GPAAEAHDVFDGILQK.Q * Jamie_phos_01_itms_28.17312.17312.2 2.5184 0.1227 96.8 2941.4922 2942.8909 3331.8 1 4.46 32.7 1 K.VSSSFS*DDS*DSGPAAEAHDVFDGILQK.Q * Jamie_phos_01_itms_28.17216.17216.3 4.4836 0.1298 98.7 2942.7544 2942.8909 3442.8 1 5.241 34.6 4 K.VSSSFS*DDS*DSGPAAEAHDVFDGILQK.Q * Jamie_phos_04_itms_4.05834.05834.3 6.6382 0.5241 100.0 3293.1843 3293.2776 9258.5 1 9.084 34.5 8 R.TKEEDEEDTSNSFEFSSSSSMSSSQTQSGR.K * Jamie_phos_04_itms_4.05599.05599.3 3.9031 0.1687 99.0 3373.1643 3373.2776 6841.1 1 5.318 27.6 1 R.TKEEDEEDTSNS*FEFSSSSSMSSSQTQSGR.K * Jamie_phos_01_itms_22.13498.13498.3 3.1789 0.1576 96.2 3155.2744 3156.211 8397.5 37 4.423 24.0 1 K.IQEEENLANSDDT*PLDT*PKFNDLFTK.N * Jamie_phos_03_itms_7.08138.08138.3 2.8337 0.1548 94.5 3086.0942 3086.3794 8648.6 5 4.116 26.9 1 K.LKTFPAERVEDITSISEVNTSFNETEK.Q * Jamie_phos_02_itms_9.07435.07435.3 3.6661 0.2352 100.0 3166.3442 3166.3794 9097.9 2 5.417 26.0 1 K.LKTFPAERVEDITSISEVNTS*FNETEK.Q * Jamie_phos_01_itms_17.10379.10379.3 4.12 0.3463 100.0 2843.8145 2845.046 8699.0 7 6.139 24.0 6 K.TFPAERVEDITSISEVNTSFNETEK.Q * Jamie_phos_04_itms_7.10127.10127.3 2.2055 0.1968 92.9 2923.2844 2925.046 8882.2 47 3.682 24.0 1 K.TFPAERVEDITSISEVNTSFNET*EK.Q * Jamie_phos_02_itms_10.08124.08124.3 4.0392 0.3849 100.0 2924.2444 2925.046 8337.1 35 6.317 25.0 1 K.TFPAERVEDITSISEVNT*SFNETEK.Q * Jamie_phos_02_itms_10.08310.08310.3 5.4692 0.3379 100.0 2925.7444 2925.046 7545.6 1 6.55 31.2 9 K.TFPAERVEDITSISEVNTS*FNETEK.Q * Jamie_phos_03_itms_10.09866.09866.3 3.5569 0.1616 97.8 3003.7144 3005.046 9732.5 4 5.205 26.0 1 K.TFPAERVEDITS*ISEVNT*SFNETEK.Q * Jamie_phos_02_itms_11.09012.09012.3 4.517 0.2432 100.0 3004.5544 3005.046 8349.6 1 4.766 28.1 3 K.TFPAERVEDITSIS*EVNTS*FNETEK.Q * Jamie_phos_02_itms_7.06475.06475.2 4.1917 0.4565 100.0 2143.172 2143.2659 5978.2 1 8.075 55.6 11 R.VEDITSISEVNTSFNETEK.Q * Jamie_phos_03_itms_6.07575.07575.2 4.4492 0.4502 100.0 2222.6921 2223.2659 8051.0 1 8.053 58.3 15 R.VEDITSISEVNTS*FNETEK.Q * Jamie_phos_03_itms_6.07553.07553.3 3.7746 0.2475 100.0 2222.6943 2223.2659 7455.3 1 4.679 37.5 2 R.VEDITSISEVNTS*FNETEK.Q * Jamie_phos_03_itms_7.07794.07794.2 2.8718 0.249 100.0 2223.2722 2223.2659 10043.2 1 5.161 41.7 2 R.VEDITSISEVNTSFNET*EK.Q YER074W 2 4 24.4% 135 15329 10.5 U RPS24A SGDID:S000000876, Chr V from 306319-306321,306788-307192, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to rat S24 ribosomal protein" YIL069C 2 4 24.4% 135 15329 10.5 U RPS24B SGDID:S000001331, Chr IX from 232366-232364,231954-231550, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps24Ap and has similarity to rat S24 ribosomal protein" Jamie_phos_01_itms_20.12237.12237.3 2.5539 0.1252 90.3 2030.4243 2030.3312 7249.0 250 3.846 27.9 1 K.LAEVYKAEKDAVSVFGFR.T Jamie_phos_03_itms_7.08464.08464.2 2.4041 0.3263 100.0 1541.4722 1541.7441 6309.1 14 5.796 50.0 3 K.SVGFGLVYNSVAEAK.K YOR096W 2 2 24.2% 190 21622 9.8 U RPS7A SGDID:S000005622, Chr XV from 505794-505937,506339-506767, Verified ORF, "Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins" * Jamie_phos_01_itms_37.22796.22796.3 4.7411 0.3298 100.0 3086.0942 3085.4785 8469.0 1 6.065 27.8 1 K.ILSQAPTELELQVAQAFVELENSSPELK.A Jamie_phos_03_itms_8.08695.08695.3 3.2689 0.279 100.0 2188.2844 2189.4294 8983.4 19 5.566 35.3 1 K.DVQQIDYKLESFQAVYNK.L YOL039W 2 3 23.6% 106 10746 4.0 U RPP2A SGDID:S000005399, Chr XV from 254295-254615, Verified ORF, "Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm" * Jamie_phos_03_itms_8.08588.08588.2 2.6289 0.3861 100.0 1545.1322 1545.727 7966.6 1 6.786 50.0 2 K.AILESVGIEIEDEK.V * Jamie_phos_04_itms_15.15888.15888.3 4.0683 0.3353 100.0 2618.7844 2616.9658 11109.2 6 5.667 26.0 1 K.AILESVGIEIEDEKVSSVLSALEGK.S Reverse_YPR145C-A 1 1 23.1% 78 9249 11.0 U YPR145C-A SGDID:S000113589, Chr XVI from 824922-824686, reverse complement, Uncharacterized ORF, "Putative protein of unknown function" * Jamie_phos_03_itms_7.08505.08505.2 1.3195 0.208 95.9 2416.5122 2417.6409 7591.0 9 3.561 32.4 1 R.Y*NQPY*QSDSKKFILKIKR.F Reverse_YOR252W 1 1 22.7% 141 16649 9.5 U YOR252W SGDID:S000005778, Chr XV from 803777-804202, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_17.16814.16814.4 3.0721 0.1155 92.1 3830.2966 3833.2761 10488.5 197 3.576 17.2 1 R.T*HAHDFIPQGKFTDSNVVDQMFKVRALEHVRK.D YLR061W 1 2 22.3% 121 13693 6.2 U RPL22A SGDID:S000004051, Chr XII from 263195-263206,263596-263949, Verified ORF, "Protein component of the large (60S) ribosomal subunit, has similarity to Rpl22Bp and to rat L22 ribosomal protein" * Jamie_phos_01_itms_14.08840.08840.3 3.1111 0.3227 100.0 3297.6843 3299.439 6721.2 1 5.361 26.9 2 R.FVSTKTNEYRLAFYQVTPEEDEEEDEE.- Reverse_YGL029W 1 1 20.0% 120 14417 10.4 U CGR1 SGDID:S000002997, Chr VII from 440068-440430, Verified ORF, "Protein involved in nucleolar integrity and processing of the pre-rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress" * Jamie_phos_03_itms_28.20651.20651.3 2.5367 0.159 92.5 2783.0942 2784.1482 10472.5 397 3.573 23.9 1 K.VVRSKARLPT*KEAKWVKGSVPT*GK.A YMR230W 1 4 20.0% 105 12738 9.1 U RPS10B SGDID:S000004843, Chr XIII from 732413-732464,732875-733140, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Ap and has similarity to rat ribosomal protein S10" YOR293W 1 4 20.0% 105 12739 8.8 U RPS10A SGDID:S000005819, Chr XV from 867095-867146,867584-867849, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps10Bp and has similarity to rat ribosomal protein S10" Jamie_phos_03_itms_21.16633.16633.3 4.8317 0.4819 100.0 2741.6643 2740.9849 7507.8 1 7.611 36.2 4 K.TQFSWQYYYYTLTEEGVEYLR.E YDL055C 5 12 19.9% 361 39566 6.3 U PSA1 SGDID:S000002213, Chr IV from 356759-355674, reverse complement, Verified ORF, "GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase), synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure" * Jamie_phos_01_itms_31.18732.18732.2 3.6386 0.3737 100.0 2292.3123 2292.5159 8128.0 1 6.641 50.0 1 K.DNSPFFVLNSDVICEYPFK.E * Jamie_phos_01_itms_32.19734.19734.2 3.1331 0.4013 100.0 1642.5721 1641.9048 7565.0 1 6.708 53.6 1 K.DFLSGTVLYLNSLAK.R * Jamie_phos_02_itms_8.07344.07344.2 2.8956 0.3685 100.0 1751.9321 1751.9054 9082.9 1 7.636 46.4 4 K.STIVGWNSTVGQWCR.L * Jamie_phos_05_itms_6.10056.10056.2 2.1851 0.1454 97.0 2463.5122 2463.7441 10313.4 2 3.616 31.8 1 R.LEGVTVLGDDVEVKDEIYINGGK.V * Jamie_phos_05_itms_6.10033.10033.3 3.4617 0.1852 98.7 2465.3943 2463.7441 4665.7 2 4.284 35.2 5 R.LEGVTVLGDDVEVKDEIYINGGK.V YGR254W 8 31 19.7% 437 46816 6.6 U ENO1 SGDID:S000003486, Chr VII from 1000932-1002245, Verified ORF, "Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose" Jamie_phos_02_itms_7.06264.06264.4 2.6625 0.1778 95.6 2584.0166 2584.8455 2937.6 8 3.919 28.0 1 R.SVYDSRGNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_12.07490.07490.3 5.7877 0.2107 100.0 2587.8245 2584.8455 9810.2 1 4.525 37.5 20 R.SVYDSRGNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_7.04854.04854.2 2.8825 0.2473 100.0 1416.2122 1417.556 7359.8 2 7.513 58.3 2 R.GNPTVEVELTTEK.G Jamie_phos_01_itms_10.06623.06623.2 2.0883 0.0976 91.4 1877.8322 1877.1045 7296.2 59 4.522 40.6 1 R.GNPTVEVELTTEKGVFR.S Jamie_phos_01_itms_32.19614.19614.3 7.2078 0.5495 100.0 2985.4143 2986.269 7098.1 1 9.655 41.3 2 K.RYPIVSIEDPFAEDDWEAWSHFFK.T Jamie_phos_01_itms_34.20802.20802.3 6.5457 0.4909 100.0 2831.4844 2830.0815 5502.3 1 8.679 43.2 1 R.YPIVSIEDPFAEDDWEAWSHFFK.T Jamie_phos_05_itms_13.16240.16240.2 4.1058 0.4771 100.0 1822.2522 1823.0099 9743.3 1 9.306 65.6 2 R.SGETEDTFIADLVVGLR.T * Jamie_phos_02_itms_6.06008.06008.3 3.9997 0.3607 100.0 2441.6343 2442.6035 4866.3 82 6.044 32.1 2 R.IEEELGDNAVFAGENFHHGDKL.- YDL229W 6 7 18.3% 613 66602 5.4 U SSB1 SGDID:S000002388, Chr IV from 44066-45907, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p" YNL209W 6 7 18.3% 613 66595 5.5 U SSB2 SGDID:S000005153, Chr XIV from 252060-253901, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1" Jamie_phos_02_itms_20.14294.14294.3 3.4541 0.231 100.0 2965.1042 2965.1511 7711.4 342 5.245 23.1 1 R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A Jamie_phos_05_itms_13.16379.16379.2 3.7103 0.487 100.0 2965.3123 2965.1511 9041.4 1 8.907 38.5 1 R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A Jamie_phos_01_itms_31.19265.19265.4 3.7759 0.2019 100.0 3263.6165 3262.774 8897.3 11 4.087 20.8 1 R.ARFEDLNAALFKSTLEPVEQVLKDAKISK.S Jamie_phos_02_itms_6.05739.05739.2 3.4015 0.0633 95.7 1460.4321 1460.6273 7403.6 3 6.117 61.5 1 K.SQIDEVVLVGGSTR.I Jamie_phos_02_itms_4.04434.04434.2 2.1872 0.3018 100.0 1592.3722 1592.7495 7638.4 2 4.684 46.7 1 K.STGKSSNITISNAVGR.L Jamie_phos_01_itms_28.16937.16937.3 4.4849 0.2134 100.0 2757.1743 2756.0825 8294.0 1 5.027 31.0 2 K.SKIEAALSDALAALQIEDPSADELRK.A YGL008C 10 15 17.4% 918 99619 5.1 U PMA1 SGDID:S000002976, Chr VII from 482671-479915, reverse complement, Verified ORF, "Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases" * Jamie_phos_01_itms_8.05458.05458.2 3.4414 0.396 100.0 1309.1122 1309.4589 8567.3 1 6.385 72.7 3 D.PSYGLTSDEVLK.R * Jamie_phos_01_itms_7.04697.04697.3 3.6181 0.3586 100.0 1465.4944 1465.6464 4526.3 42 6.501 41.7 1 D.PSYGLTSDEVLKR.R * Jamie_phos_05_itms_7.12852.12852.3 2.3339 0.21 95.4 2652.8044 2653.9092 5671.6 38 4.463 25.0 1 R.IVTEDCFLQIDQSAITGESLAVDK.H Jamie_phos_03_itms_12.11043.11043.2 2.64 0.2963 100.0 1806.9521 1806.0295 10457.3 2 5.606 40.6 1 K.LSAIESLAGVEILCSDK.T Jamie_phos_02_itms_11.08911.08911.4 4.2093 0.2784 100.0 3849.7766 3848.261 6623.7 2 4.351 21.7 2 K.GAPLFVLKTVEEDHPIPEDVHENYENKVAELASR.G Jamie_phos_01_itms_6.04230.04230.3 4.8468 0.3684 100.0 2293.7644 2295.3806 9706.5 1 7.05 48.6 1 K.TVEEDHPIPEDVHENYENK.V Jamie_phos_01_itms_9.05933.05933.4 4.9417 0.3382 100.0 3022.1765 3022.2114 7686.0 1 7.842 28.0 2 K.TVEEDHPIPEDVHENYENKVAELASR.G Jamie_phos_01_itms_32.19840.19840.3 5.825 0.3942 100.0 3264.2644 3263.5623 6845.9 1 7.001 33.1 2 R.LGLGGGGDMPGSELADFVENADGFAEVFPQHK.Y Jamie_phos_02_itms_4.04423.04423.2 3.1825 0.3172 100.0 1546.3121 1546.6775 8451.2 1 6.73 53.3 1 K.KADTGIAVEGATDAAR.S * Jamie_phos_01_itms_15.09335.09335.4 3.0582 0.1167 92.7 2963.0166 2958.1182 8317.3 462 3.739 24.6 1 K.KSTRSVEDFMAAMQRVST*QHEKET*.- Reverse_YBR217W 1 1 17.2% 186 21106 6.8 U ATG12 SGDID:S000000421, Chr II from 657827-658387, Verified ORF, "Ubiquitin-like modifier, conjugated via an isopeptide bond to a lysine residue of Atg5p by the E1 enzyme, Atg7p, and the E2 enzyme, Atg10p, a step that is essential for autophagy" * Jamie_phos_02_itms_34.22410.22410.3 3.1927 0.0948 90.8 3540.8342 3542.749 9920.1 13 2.944 21.8 1 K.ITEEQEYTGSSSDEVQQDVSIDSALGLQSLRR.S YCR031C 1 1 16.8% 137 14537 10.7 U RPS14A SGDID:S000000627, Chr III from 178215-178209,177901-177495, reverse complement, Verified ORF, "Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins" YJL191W 1 1 16.7% 138 14650 10.5 U RPS14B SGDID:S000003727, Chr X from 73786-73795,74204-74610, Verified ORF, "Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins" Jamie_phos_03_itms_8.08646.08646.3 3.5714 0.2732 100.0 2585.5745 2585.876 8048.5 1 5.352 30.7 1 R.IYASFNDTFVHVTDLSGKETIAR.V YPL255W 5 5 15.1% 385 45384 6.5 U BBP1 SGDID:S000006176, Chr XVI from 67725-68882, Verified ORF, "Protein required for the spindle pole body (SPB) duplication, localized at the central plaque periphery; forms a complex with a nuclear envelope protein Mps2p and SPB components Spc29p and Kar1p; required for mitotic functions of Cdc5p" * Jamie_phos_01_itms_18.11070.11070.4 3.6614 0.3163 100.0 2227.9766 2227.523 7214.6 1 5.709 33.3 1 K.SLKKVLDQTISHEAELATSR.E * Jamie_phos_01_itms_18.11513.11513.4 4.3378 0.182 100.0 2513.0566 2512.826 8319.4 44 4.809 30.2 1 K.SLKKVLDQTISHEAELATSRER.L * Jamie_phos_01_itms_8.05171.05171.2 2.7358 0.2613 100.0 1770.3722 1770.9371 8513.2 1 4.836 46.7 1 K.VLDQTISHEAELATSR.E * Jamie_phos_02_itms_7.06559.06559.3 3.5169 0.3119 100.0 2338.2844 2338.6814 8572.6 1 5.59 36.1 1 R.LSDLELKYTNLQIEKDMQR.D * Jamie_phos_01_itms_32.19482.19482.2 5.0878 0.3422 100.0 2060.132 2059.2834 8329.6 1 6.348 65.6 1 R.DNYESEIHDLLLQLSLR.N Reverse_YLR327C 1 1 15.1% 86 9834 9.7 U YLR327C SGDID:S000004319, Chr XII from 783387-783127, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_02_itms_18.13165.13165.2 1.9037 0.1937 98.4 1709.1322 1707.6309 10849.2 12 4.558 45.8 1 R.RENNQS*NSGRRT*K.N YJL136C 1 1 14.9% 87 9760 6.1 U RPS21B SGDID:S000003672, Chr X from 157191-157168,156707-156468, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein" YKR057W 1 1 14.9% 87 9746 6.1 U RPS21A SGDID:S000001765, Chr XI from 551299-551322,551645-551884, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similarity to rat S21 ribosomal protein" Jamie_phos_02_itms_4.04428.04428.2 2.455 0.2452 100.0 1368.5122 1368.4893 7704.7 1 5.451 66.7 1 K.ADDHASVQINVAK.V YLR051C 1 1 14.7% 217 25636 9.5 U YLR051C SGDID:S000004041, Chr XII from 246978-246325, reverse complement, Uncharacterized ORF, "Protein required for cell viability" * Jamie_phos_05_itms_32.27937.27937.4 3.4068 0.1092 94.3 4292.8164 4295.8906 10292.1 378 3.545 18.3 1 K.YFKRKYNEIQEKST*S*GRKAHYKKMKEMRKKRR.- YPL159C 1 1 14.6% 253 29103 10.2 U PET20 SGDID:S000006080, Chr XVI from 251667-250906, reverse complement, Uncharacterized ORF, "Protein required for respiratory growth and stability of the mitochondrial genome" * Jamie_phos_03_itms_39.27664.27664.4 3.5926 0.0899 93.7 4385.4966 4379.9565 7255.4 277 2.899 18.1 1 K.SMNTNELIHVSAKRNTLVDNKTSETLQRKMDEFSKRR.G YMR142C 1 2 14.6% 199 22525 11.1 U RPL13B SGDID:S000004750, Chr XIII from 551206-551203,550800-550205, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein" * Jamie_phos_01_itms_23.14109.14109.3 3.8666 0.1992 100.0 2955.4744 2955.2512 6621.5 10 4.361 25.9 2 R.DGKAPEAEQVLSAAATFPIAQPATDVEAR.A YBL072C 3 6 14.5% 200 22490 10.7 U RPS8A SGDID:S000000168, Chr II from 89123-88521, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to rat S8 ribosomal protein" YER102W 3 6 14.5% 200 22490 10.7 U RPS8B SGDID:S000000904, Chr V from 363096-363698, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps8Bp and has similarity to rat S8 ribosomal protein" Jamie_phos_01_itms_12.07488.07488.2 1.9722 0.1019 90.6 1625.5721 1626.7631 10394.5 3 3.431 46.4 1 R.IETGNFSWASEGISK.K Jamie_phos_01_itms_35.21617.21617.2 1.8839 0.1157 91.7 1911.9521 1914.9371 9204.1 125 3.159 33.3 1 R.IETGNFSWAS*EGIS*KK.T Jamie_phos_02_itms_5.04712.04712.2 4.3451 0.3828 100.0 1396.8922 1397.4845 6082.8 1 8.031 83.3 4 K.IESSVESQFSAGR.L YGR192C 3 13 14.2% 332 35747 7.0 U TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall " * Jamie_phos_02_itms_14.10606.10606.3 4.8921 0.3727 100.0 3266.4844 3266.5913 9151.3 1 6.446 27.6 1 K.IATYQERDPANLPWGSSNVDIAIDSTGVFK.E Jamie_phos_02_itms_9.07632.07632.2 4.0723 0.3973 100.0 2127.612 2128.3484 9712.3 1 6.995 59.4 4 K.FVKLVSWYDNEYGYSTR.V Jamie_phos_01_itms_12.07383.07383.2 3.6323 0.3526 100.0 1753.0922 1753.8651 8791.3 1 8.208 69.2 8 K.LVSWYDNEYGYSTR.V YOR051C 2 2 13.8% 412 47352 4.8 U YOR051C SGDID:S000005577, Chr XV from 426085-424847, reverse complement, Uncharacterized ORF, "Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts" * Jamie_phos_03_itms_12.11104.11104.2 2.5005 0.2159 100.0 2350.7122 2351.4983 9108.0 5 5.233 35.0 1 R.SQMSVELDDDADLDDELAQLK.G * Jamie_phos_01_itms_39.23900.23900.3 6.4527 0.4616 100.0 4083.0842 4084.3496 10254.8 1 7.588 26.4 1 K.AKLEDDPDTWVQVAEAYIDLGNLLDNESAEQEEAYK.T YFR031C-A 2 2 13.8% 254 27408 11.1 U RPL2A SGDID:S000002104, Chr VI from 221406-221403,221255-220495, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E. coli L2 and rat L8 ribosomal proteins" YIL018W 2 2 13.8% 254 27408 11.1 U RPL2B SGDID:S000001280, Chr IX from 316766-316769,317170-317930, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl2Ap and has similarity to E. coli L2 and rat L8 ribosomal proteins; expression is upregulated at low temperatures" Jamie_phos_01_itms_7.04476.04476.4 3.8858 0.1791 100.0 2098.2966 2099.3108 4102.6 7 4.781 30.6 1 R.ASGNYVIIIGHNPDENKTR.V Jamie_phos_02_itms_35.23244.23244.2 2.2414 0.2176 100.0 2023.6921 2022.2723 9020.9 114 3.76 35.3 1 K.TRVRLPSGAKKVIS*SDAR.G YLR075W 2 2 13.6% 221 25361 10.0 U RPL10 SGDID:S000004065, Chr XII from 282928-283593, Verified ORF, "Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subunits; regulates translation initiation; has similarity to rat L10 ribosomal protein and to members of the QM gene family" * Jamie_phos_01_itms_34.20850.20850.3 3.077 0.1644 96.2 3358.3743 3357.7083 8062.5 2 4.237 22.4 1 K.KATVDEFPLCVHLVSNELEQLSSEALEAAR.I * Jamie_phos_01_itms_37.22455.22455.3 5.0042 0.4128 100.0 3229.4043 3229.5342 10226.1 1 7.477 31.2 1 K.ATVDEFPLCVHLVSNELEQLSSEALEAAR.I YER042W 1 1 13.6% 184 21141 7.0 U MXR1 SGDID:S000000844, Chr V from 234936-235490, Verified ORF, "Peptide methionine sulfoxide reductase, reverses the oxidation of methionine residues; involved in oxidative damage repair, providing resistance to oxidative stress and regulation of lifespan" * Jamie_phos_05_itms_22.21979.21979.3 2.7967 0.141 92.9 3219.0544 3222.445 10448.1 7 4.37 22.9 1 K.Y*DPAKDKLITLACGCFWGTEHMY*RK.Y YLR026C 1 1 13.5% 340 38807 7.0 U SED5 SGDID:S000004016, Chr XII from 196473-195451, reverse complement, Verified ORF, "cis-Golgi t-SNARE syntaxin required for vesicular transport between the ER and the Golgi complex, binds at least 9 SNARE proteins" * Jamie_phos_01_itms_36.21996.21996.4 3.3624 0.11 94.2 5062.177 5066.0166 7668.8 98 3.383 14.8 1 K.KASGIAHEISSTAQLLSKLAVLAKRKPMFNDNPVEIAELSFLIKRK.I YNL252C 1 1 13.5% 281 32213 9.1 U MRPL17 SGDID:S000005196, Chr XIV from 172287-171442, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the large subunit" * Jamie_phos_01_itms_33.20048.20048.4 3.583 0.0858 93.1 4110.177 4106.7075 9301.7 10 3.133 18.5 1 R.GLATATATAS*SAPPKIKVGVLLS*RIPIIKSELNELEKK.Y Reverse_YDL043C 1 1 13.5% 266 29921 8.1 U PRP11 SGDID:S000002201, Chr IV from 376477-375677, reverse complement, Verified ORF, "Subunit of the SF3a splicing factor complex, required for spliceosome assembly" * Jamie_phos_03_itms_28.21059.21059.4 3.163 0.1241 94.0 4225.6963 4225.7686 8444.1 385 3.099 18.1 1 R.LVNLGHKKGGLHREVSSWSMHMTNCLKCVLKGS*HNK.Y YKL096W 2 7 13.4% 239 24268 4.7 U CWP1 SGDID:S000001579, Chr XI from 260776-261495, Verified ORF, "Cell wall mannoprotein, linked to a beta-1,3- and beta-1,6-glucan heteropolymer through a phosphodiester bond; involved in cell wall organization" * Jamie_phos_02_itms_7.06482.06482.3 5.4538 0.4827 100.0 3471.1443 3471.7124 10363.9 1 8.404 30.6 4 K.LKFDDDKYAVVNEDGSFKEGSESDAATGFSIK.D * Jamie_phos_03_itms_6.07101.07101.3 4.0384 0.1052 96.4 3231.7744 3230.379 9968.4 1 4.717 25.9 3 K.FDDDKYAVVNEDGSFKEGSESDAATGFSIK.D Reverse_YKL164C 1 1 13.2% 341 34622 6.5 U PIR1 SGDID:S000001647, Chr XI from 142824-141799, reverse complement, Verified ORF, "O-glycosylated protein required for cell wall stability; attached to the cell wall via beta-1,3-glucan; mediates mitochondrial translocation of Apn1p; expression regulated by the cell integrity pathway and by Swi5p during the cell cycle" * Jamie_phos_01_itms_42.25620.25620.4 3.2438 0.1416 95.7 4614.6963 4609.9604 9418.8 171 3.328 16.7 1 K.TKT*TAQIQGDGIQSVAAATT*KASTTKTTAQIQGDGIQSVAAAKTK.T YJL177W 1 1 13.0% 184 20551 10.9 U RPL17B SGDID:S000003713, Chr X from 90784-91092,91410-91655, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins" YKL180W 1 1 13.0% 184 20549 10.9 U RPL17A SGDID:S000001663, Chr XI from 109274-109582,109889-110134, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex" Jamie_phos_02_itms_6.05577.05577.3 2.2132 0.1744 90.6 2701.5244 2702.0337 8006.3 1 3.901 27.2 1 R.INKYESSPSHIELVVTEKEEAVAK.A YGR152C 1 1 12.9% 272 30391 9.2 U RSR1 SGDID:S000003384, Chr VII from 795497-794679, reverse complement, Verified ORF, "GTP-binding protein of the ras superfamily required for bud site selection, morphological changes in response to mating pheromone, and efficient cell fusion; localized to the plasma membrane; significantly similar to mammalian Rap GTPases" * Jamie_phos_03_itms_20.16037.16037.4 3.0919 0.1468 95.6 3862.2966 3863.1099 9685.7 105 3.436 18.6 1 K.VKQST*PVNEKHKPSHAVPKSGSSNRTGISAT*SQQK.K YIR032C 1 1 12.8% 195 21727 5.4 U DAL3 SGDID:S000001471, Chr IX from 415614-415027, reverse complement, Verified ORF, "Ureidoglycolate hydrolase, converts ureidoglycolate to glyoxylate and urea in the third step of allantoin degradation; expression sensitive to nitrogen catabolite repression" * Jamie_phos_01_itms_23.14471.14471.4 3.1785 0.1201 93.7 2833.7766 2835.098 6926.5 443 3.412 23.6 1 R.TSAEVAY*LVVVAKEIGNKPDLST*LR.A YNL188W 4 8 12.7% 433 50653 9.3 U KAR1 SGDID:S000005132, Chr XIV from 286309-287610, Verified ORF, "Essential protein involved in karyogamy during mating and in spindle pole body duplication during mitosis, localizes to the half-bridge of the spindle pole body, interacts with Spc72p during karyogamy, also interacts with Cdc31p" * Jamie_phos_02_itms_12.09744.09744.4 5.4698 0.3689 100.0 4723.2163 4722.985 4721.0 1 5.373 21.9 5 R.KREFEPTLAENKAEEYIS*DEDNVKIDEDNIENELQFTPK.I * Jamie_phos_01_itms_26.15832.15832.3 3.9118 0.2872 100.0 4438.1646 4438.6235 4354.2 48 5.315 18.8 1 R.EFEPTLAENKAEEYIS*DEDNVKIDEDNIENELQFTPK.I * Jamie_phos_02_itms_14.10400.10400.3 2.8262 0.1272 91.8 3278.1543 3279.3625 8234.1 353 3.863 21.2 1 K.AEEYIS*DEDNVKIDEDNIENELQFTPK.I * Jamie_phos_01_itms_19.11642.11642.3 3.2894 0.266 100.0 1847.9043 1848.101 6430.4 4 5.218 40.0 1 K.KLDTIIELLKDDTDSK.E YNL310C 1 1 12.7% 205 23542 9.8 U ZIM17 SGDID:S000005254, Chr XIV from 52523-51906, reverse complement, Verified ORF, "Heat shock protein with a zinc finger motif; essential for protein import into mitochondria; may act with Pam18p to facilitate recognition and folding of imported proteins by Ssc1p (mtHSP70) in the mitochondrial matrix" * Jamie_phos_01_itms_24.14770.14770.3 2.8713 0.1242 92.0 3164.5745 3161.7144 7118.5 121 3.321 23.0 1 K.KDDKKVHLGS*FKVDKPKMMIAFTCKK.C YIL148W 1 3 12.5% 128 14554 9.8 U RPL40A SGDID:S000001410, Chr IX from 68708-68715,69150-69528, Verified ORF, "Fusion protein, identical to Rpl40Bp, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes" YLR167W 1 3 10.5% 152 17216 9.9 U RPS31 SGDID:S000004157, Chr XII from 498949-499407, Verified ORF, "Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; interacts genetically with translation factor eIF2B" YLL039C 1 15 4.2% 381 42826 7.6 U UBI4 SGDID:S000003962, Chr XII from 65206-64061, reverse complement, Verified ORF, "Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-26S proteasome system; essential for the cellular stress response" YKR094C 1 3 12.5% 128 14554 9.8 U RPL40B SGDID:S000001802, Chr XI from 618392-618385,618016-617638, reverse complement, Verified ORF, "Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of the large (60S) ribosomal subunit with similarity to rat L40; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes" Jamie_phos_03_itms_6.06734.06734.2 2.73 0.266 100.0 1765.2922 1764.9244 10007.0 1 6.627 53.3 3 K.TITLEVESSDTIDNVK.S YER083C 1 1 12.3% 285 31493 9.5 U GET2 SGDID:S000000885, Chr V from 327027-326170, reverse complement, Verified ORF, "Subunit of the GET complex; required for meiotic nuclear division and for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion; may be involved in cell wall function" * Jamie_phos_01_itms_63.37992.37992.4 3.2293 0.0904 90.8 4299.0166 4303.955 13335.9 153 3.194 19.1 1 K.WVFFLLPYLYLIT*RPNSSVWPAYAFTQSAWFAPLR.N YGL011C 1 1 12.3% 252 28001 6.2 U SCL1 SGDID:S000002979, Chr VII from 475252-474494, reverse complement, Verified ORF, "Alpha subunit of the 20S core complex of the 26S proteasome involved in the degradation of ubiquitinated substrates; essential for growth; detected in the mitochondria" * Jamie_phos_04_itms_13.14530.14530.4 3.4615 0.0939 93.1 3381.7766 3379.85 9186.9 5 3.566 21.7 1 K.VVEFAITHMIDALGTEFSKNDLEVGVATKDK.F Reverse_YGL183C 1 1 12.3% 219 26083 9.4 U MND1 SGDID:S000003151, Chr VII from 157291-157289,157205-156549, reverse complement, Verified ORF, "Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which is involved in chromosome pairing and repair of meiotic double-strand breaks" * Jamie_phos_04_itms_38.29546.29546.4 2.8629 0.1403 93.6 3422.7766 3424.9658 10113.1 22 3.363 23.1 1 K.KY*LYDILIEINDTTKELHVKKLRIQQK.N YHR152W 1 1 12.1% 173 19912 9.4 U SPO12 SGDID:S000001195, Chr VIII from 401437-401958, Verified ORF, "Nucleolar protein of unknown function, positive regulator of exit from mitosis; involved in regulating the release of Cdc14p from the nucleolus in early anaphase; proposed to play similar role in meiosis" * Jamie_phos_01_itms_10.06303.06303.4 3.0135 0.1089 92.1 2541.4966 2537.7495 6774.8 169 3.135 27.5 1 R.IFRKKSTSNLKS*SHTT*SNLVK.K YOR134W 2 2 12.0% 409 46216 7.5 U BAG7 SGDID:S000005660, Chr XV from 578564-579793, Verified ORF, "Rho GTPase activating protein (RhoGAP), stimulates the intrinsic GTPase activity of Rho1p, which plays a role in actin cytoskeleton organization and control of cell wall synthesis; structurally and functionally related to Sac7p" * Jamie_phos_02_itms_22.15330.15330.2 1.6795 0.1644 95.6 2073.7322 2074.1687 10183.5 170 3.834 34.4 1 K.SGKY*LKENALDT*TGIFR.I * Jamie_phos_04_itms_23.20799.20799.4 2.8182 0.16 95.2 3424.9766 3423.719 11410.6 9 4.154 21.5 1 R.T*LSAESLSPRLSKLLGNVGNSSNTGIKDPTER.V Reverse_YGR006W 1 1 12.0% 251 28377 6.7 U PRP18 SGDID:S000003238, Chr VII from 506074-506829, Verified ORF, "Splicing factor involved in the positioning of the 3' splice site during the second catalytic step of splicing, recruited to the spliceosome by Slu7p" * Jamie_phos_02_itms_28.19326.19326.4 3.5022 0.1668 98.0 3503.2966 3504.9521 7747.0 87 4.022 21.3 1 R.KIST*IWLRTREDIMINAANRGGQIKSHASR.A YGL147C 1 2 12.0% 191 21569 9.7 U RPL9A SGDID:S000003115, Chr VII from 228334-227759, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins" * Jamie_phos_02_itms_14.10525.10525.3 4.0153 0.2157 100.0 2710.9443 2710.105 8070.8 1 5.012 33.0 2 R.NKDIRKFLDGIYVSHKGFITEDL.- YNL302C 1 1 11.8% 144 15891 9.6 U RPS19B SGDID:S000005246, Chr XIV from 62943-62924,62372-61958, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Ap and has similarity to rat S19 ribosomal protein" YOL121C 1 1 11.8% 144 15917 9.6 U RPS19A SGDID:S000005481, Chr XV from 92849-92830,92439-92025, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps19Bp and has similarity to rat S19 ribosomal protein" Jamie_phos_01_itms_32.19580.19580.2 3.138 0.3315 100.0 1930.2122 1930.1271 10879.0 1 5.886 43.8 1 R.DVAAQDFINAYASFLQR.Q YLR044C 3 7 11.5% 563 61495 6.2 U PDC1 SGDID:S000004034, Chr XII from 234082-232391, reverse complement, Verified ORF, "Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism" * Jamie_phos_01_itms_31.18912.18912.2 2.1956 0.2276 100.0 2290.3123 2291.6091 8984.6 4 4.736 32.5 1 K.QVNVNTVFGLPGDFNLSLLDK.I Jamie_phos_02_itms_6.05899.05899.2 4.014 0.3978 100.0 1999.1522 1999.1063 11374.0 1 6.951 47.2 4 R.WAGNANELNAAYAADGYAR.I * Jamie_phos_01_itms_22.13520.13520.3 4.7843 0.3364 100.0 2744.0645 2744.2065 8561.5 1 6.098 33.3 2 R.TTYVTQRPVYLGLPANLVDLNVPAK.L YBL002W 1 1 11.5% 131 14237 10.1 U HTB2 SGDID:S000000098, Chr II from 236495-236890, Verified ORF, "One of two nearly identical (see HTB1) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation" YDR224C 1 1 11.5% 131 14252 10.1 U HTB1 SGDID:S000002632, Chr IV from 914706-914311, reverse complement, Verified ORF, "One of two nearly identical (see HTB2) histone H2B subtypes required for chromatin assembly and chromosome function; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates transcriptional activation, meiotic DSB formation and H3 methylation " Jamie_phos_01_itms_33.19997.19997.2 2.6158 0.1569 98.6 1772.4321 1773.0137 9420.9 268 4.653 39.3 1 K.SMSILNSFVNDIFER.I YGR159C 2 2 11.4% 414 44535 4.9 U NSR1 SGDID:S000003391, Chr VII from 807661-806417, reverse complement, Verified ORF, "Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis" * Jamie_phos_03_itms_5.05812.05812.2 3.0827 0.3475 100.0 1770.0122 1770.8926 8311.4 1 6.403 57.1 1 R.GYGYVDFENKSYAEK.A * Jamie_phos_02_itms_25.17101.17101.3 3.7583 0.3386 100.0 3536.3342 3536.8762 4159.1 1 5.761 27.4 1 K.FGDTPSEPSDTLFLGNLSFNADRDAIFELFAK.H Reverse_YNL190W 1 4 11.3% 204 21966 10.4 U YNL190W SGDID:S000005134, Chr XIV from 282396-283010, Uncharacterized ORF, "Hypothetical protein" Jamie_phos_04_itms_24.21122.21122.3 2.647 0.1662 94.3 2743.3442 2738.8906 8223.5 29 4.059 27.3 4 K.STKNFKGY*KHTGTHNPT*KSKSTK.N YLR249W 5 13 11.2% 1044 115945 6.0 U YEF3 SGDID:S000004239, Chr XII from 636782-639916, Verified ORF, "Translational elongation factor, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes by releasing EF-1 alpha from the ribosomal complex; contains two ABC cassettes; binds and hydrolyses ATP" * Jamie_phos_01_itms_29.18046.18046.4 3.7601 0.1145 95.8 3353.0566 3351.6995 6291.5 2 4.112 25.3 1 R.HEIASEVASFLNGNIIEHDVPEHFFGELAK.G * Jamie_phos_01_itms_21.12930.12930.3 4.6776 0.4016 100.0 3846.3843 3847.9705 6415.8 1 7.77 28.8 3 K.RAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK.I * Jamie_phos_01_itms_24.14636.14636.3 3.7264 0.3162 100.0 3692.5144 3691.783 5444.2 1 5.02 24.2 1 R.AVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAK.I * Jamie_phos_03_itms_12.11380.11380.3 4.5024 0.3491 100.0 3155.8743 3156.3862 9540.5 5 6.517 25.0 2 R.TVYVEHDIDGTHSDTSVLDFVFESGVGTK.E * Jamie_phos_01_itms_23.14162.14162.3 5.1433 0.3486 100.0 2776.1643 2777.0564 7682.5 1 6.448 34.8 6 K.AYEELSNTDLEFKFPEPGYLEGVK.T Reverse_YLR026C 1 1 11.2% 340 38807 7.0 U SED5 SGDID:S000004016, Chr XII from 196473-195451, reverse complement, Verified ORF, "cis-Golgi t-SNARE syntaxin required for vesicular transport between the ER and the Golgi complex, binds at least 9 SNARE proteins" * Jamie_phos_01_itms_28.16985.16985.4 4.1736 0.107 97.5 4313.8564 4318.615 7838.2 384 3.039 16.2 1 K.SHQVASPQKSSQNSTNGNVDT*KKLQSLQVLSQEIAY*IK.R YBL016W 1 1 11.0% 353 40772 7.1 U FUS3 SGDID:S000000112, Chr II from 192454-193515, Verified ORF, "Mitogen-activated protein kinase involved in mating pheromone response; activated by phoshporylation by Ste7p; provides specificity during the mating vs. filamentous growth response by phosphorylating transcriptional and cytoplasmic targets" * Jamie_phos_01_itms_39.23829.23829.4 3.791 0.1871 99.3 4280.7363 4275.812 9524.8 5 3.376 18.0 1 R.IVY*NISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKK.I YGR048W 1 1 10.8% 361 39810 6.2 U UFD1 SGDID:S000003280, Chr VII from 589830-590915, Verified ORF, "Protein that interacts with Cdc48p and Npl4p, involved in recognition of polyubiquitinated proteins and their presentation to the 26S proteasome for degradation; involved in transporting proteins from the ER to the cytosol" * Jamie_phos_01_itms_35.21351.21351.4 3.9919 0.0842 95.2 4193.4165 4193.638 8712.7 95 2.97 18.9 1 K.KNS*FGKGQVLDPSVLGQGSMSTRIDYAGIANSSRNKLSK.F YJL190C 1 4 10.8% 130 14626 9.9 U RPS22A SGDID:S000003726, Chr X from 75301-74909, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Bp and has similarity to E. coli S8 and rat S15a ribosomal proteins" YLR367W 1 4 10.8% 130 14626 9.9 U RPS22B SGDID:S000004359, Chr XII from 856441-856573,857057-857316, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps22Ap and has similarity to E. coli S8 and rat S15a ribosomal proteins" Jamie_phos_01_itms_10.06123.06123.3 4.1509 0.3086 100.0 1751.0044 1751.8522 8592.0 1 5.745 53.8 4 K.HGYIGEFEYIDDHR.S Reverse_YBR234C 1 1 10.7% 384 42475 7.0 U ARC40 SGDID:S000000438, Chr II from 686587-685433, reverse complement, Verified ORF, "Essential subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches" * Jamie_phos_04_itms_34.27138.27138.4 3.1817 0.1865 97.7 4494.6567 4495.5986 7354.0 2 4.383 18.8 1 K.FKRLAS*IGFTSSEDNNGS*LEDTNGSATLASSKNNDSKDLNK.A Reverse_YBL064C 1 1 10.7% 261 29496 8.9 U PRX1 SGDID:S000000160, Chr II from 101158-100373, reverse complement, Verified ORF, "Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity, has a role in reduction of hydroperoxides; induced during respiratory growth and under conditions of oxidative stress" * Jamie_phos_01_itms_28.17144.17144.4 3.4757 0.1022 94.1 3337.4565 3339.6438 8191.4 40 3.51 22.8 1 K.DTLQLADIVRLVES*T*NRGVTSPYTFILR.I YIL070C 1 1 10.5% 266 30132 4.6 U MAM33 SGDID:S000001332, Chr IX from 231069-230269, reverse complement, Verified ORF, "Acidic protein of the mitochondrial matrix involved in oxidative phosphorylation; related to the human complement receptor gC1q-R" * Jamie_phos_01_itms_34.20775.20775.3 3.7999 0.185 99.3 3300.8044 3298.5867 10064.1 4 4.33 23.1 1 R.GVNEELASFISAYSEFKENNEYISWLEK.M YDR050C 1 4 10.5% 248 26795 6.0 U TPI1 SGDID:S000002457, Chr IV from 556469-555723, reverse complement, Verified ORF, "Triose phosphate isomerase, abundant glycolytic enzyme; mRNA half-life is regulated by iron availability; transcription is controlled by activators Reb1p, Gcr1p, and Rap1p through binding sites in the 5' non-coding region" * Jamie_phos_02_itms_15.11202.11202.3 5.179 0.3703 100.0 2764.5544 2764.1077 8944.6 1 6.7 37.0 4 K.DKADVDGFLVGGASLKPEFVDIINSR.N YNR014W 1 1 10.4% 212 23077 8.4 U YNR014W SGDID:S000005297, Chr XIV from 652467-653105, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_34.20784.20784.3 2.5895 0.2701 99.5 2331.1743 2332.2458 6796.7 181 4.476 26.2 1 R.SS*SRSSSSSSCSSATSKACSPR.G Reverse_YBR145W 1 1 10.3% 351 37648 6.4 U ADH5 SGDID:S000000349, Chr II from 533756-534811, Verified ORF, "Alcohol dehydrogenase isoenzyme V; involved in ethanol production" * Jamie_phos_03_itms_37.26214.26214.4 2.7037 0.1356 91.2 3819.5764 3817.3643 10995.0 173 3.679 19.0 1 R.YGMALAYQIALSGLGGCAGSIT*VWQGPIVNARKLAK.Y YLR193C 1 1 10.3% 175 20108 9.8 U YLR193C SGDID:S000004183, Chr XII from 540538-540011, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_14.17000.17000.2 1.7662 0.1182 90.6 2157.392 2156.3342 8841.2 3 3.312 41.2 1 K.FSS*GFNMGIKSKVEDWSR.T YOL028C 1 1 10.2% 245 27387 9.7 U YAP7 SGDID:S000005388, Chr XV from 271370-270633, reverse complement, Verified ORF, "Putative basic leucine zipper (bZIP) transcription factor" * Jamie_phos_01_itms_21.13208.13208.4 2.4715 0.2353 97.8 3048.0964 3053.2207 3923.8 172 4.096 23.6 1 K.LLESEFS*DT*KENLQKSIALNNELQK.A YIL053W 2 4 10.0% 271 30439 6.6 U RHR2 SGDID:S000001315, Chr IX from 255050-255865, Verified ORF, "Constitutively expressed isoform of DL-glycerol-3-phosphatase; involved in glycerol biosynthesis, induced in response to both anaerobic and, along with the Hor2p/Gpp2p isoform, osmotic stress" * Jamie_phos_03_itms_20.16210.16210.3 2.4375 0.1599 91.9 2597.0344 2597.7913 11333.1 52 4.117 27.4 1 R.VGEYNAETDEVELIFDDYLYAK.D * Jamie_phos_03_itms_21.16557.16557.3 4.9637 0.2882 100.0 3183.0842 3182.4614 6194.3 1 5.458 29.8 3 R.VGEYNAETDEVELIFDDYLYAKDDLLK.W YDL192W 2 7 9.9% 181 20529 7.4 U ARF1 SGDID:S000002351, Chr IV from 116322-116867, Verified ORF, "ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf2p" * Jamie_phos_01_itms_11.06782.06782.3 2.4227 0.2074 96.4 2346.8643 2345.3604 8882.4 76 4.498 26.5 1 R.HY*YRNT*EGVIFVVDSNDR.S * Jamie_phos_03_itms_6.07091.07091.2 4.319 0.3096 100.0 1566.2522 1565.6799 8835.7 1 7.519 73.1 6 R.NTEGVIFVVDSNDR.S YGL075C 3 18 9.8% 387 44585 8.3 U MPS2 SGDID:S000003043, Chr VII from 368091-366928, reverse complement, Verified ORF, "Essential membrane protein localized at the nuclear envelope and spindle pole body (SPB), required for insertion of the newly duplicated SPB into the nuclear envelope; potentially phosphorylated by Cdc28p" * Jamie_phos_01_itms_13.08258.08258.2 2.5159 0.3024 100.0 1183.0721 1183.1771 6229.5 2 5.422 65.0 16 K.NTEGAGIST*PR.K * Jamie_phos_01_itms_7.04616.04616.2 2.1556 0.0725 90.1 1314.8322 1314.5248 7782.2 49 3.297 50.0 1 K.ALEVQVEELKR.E * Jamie_phos_03_itms_45.31195.31195.2 1.729 0.1297 91.6 2092.672 2092.269 8278.6 26 3.79 36.7 1 K.IVWFFEDQTDLETEYR.S Reverse_YDR259C 1 1 9.7% 383 43597 8.7 U YAP6 SGDID:S000002667, Chr IV from 975776-974625, reverse complement, Verified ORF, "Putative basic leucine zipper (bZIP) transcription factor; overexpression increases sodium and lithium tolerance" * Jamie_phos_01_itms_40.24260.24260.4 4.1362 0.1519 98.8 4144.4165 4148.352 9211.0 23 4.58 19.0 1 K.QSTS*PQAIQPSPHENLNKESANYTAMSSSGQNYMDPR.I YMR186W 5 20 9.6% 705 80900 4.8 U HSC82 SGDID:S000004798, Chr XIII from 632354-634471, Verified ORF, "Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, and together they are essential; expressed constitutively at 10-fold higher basal levels that HSP82 and induced 2-3 fold by heat shock" YPL240C 5 20 9.6% 709 81406 4.9 U HSP82 SGDID:S000006161, Chr XVI from 98625-96496, reverse complement, Verified ORF, "Cytoplasmic chaperone (Hsp90 family) required for pheromone signaling and negative regulation of Hsf1p; docks with the mitochondrial import receptor Tom70p for preprotein delivery; interacts with co-chaperones Cns1p, Cpr6p, Cpr7p, and Sti1p" Jamie_phos_02_itms_8.07179.07179.2 3.3132 0.2638 100.0 1783.6122 1784.016 7493.4 1 5.427 65.4 2 R.LFLKDDQLEYLEEK.R Jamie_phos_01_itms_48.29501.29501.3 3.4129 0.1111 94.3 3748.4043 3748.2214 9346.8 1 3.764 21.9 1 R.VFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSR.E Jamie_phos_03_itms_8.09046.09046.2 2.882 0.3531 100.0 2510.3523 2511.699 9975.1 1 6.634 45.0 3 K.TLVDITKDFELEETDEEKAER.E Jamie_phos_03_itms_8.09045.09045.3 6.273 0.4592 100.0 2510.6343 2511.699 7899.0 1 7.387 42.5 10 K.TLVDITKDFELEETDEEKAER.E Jamie_phos_03_itms_8.09064.09064.4 3.5435 0.1859 99.3 2511.8965 2511.699 3088.6 1 4.527 35.0 4 K.TLVDITKDFELEETDEEKAER.E YBR118W 3 5 9.6% 458 50033 9.0 U TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes" YPR080W 3 5 9.6% 458 50033 9.0 U TEF1 SGDID:S000006284, Chr XVI from 700592-701968, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes" Jamie_phos_01_itms_7.04390.04390.3 3.6933 0.3276 100.0 1560.9844 1561.7812 7490.8 1 6.352 42.9 3 K.SHINVVVIGHVDSGK.S Jamie_phos_02_itms_5.04776.04776.2 2.4291 0.2269 100.0 1561.5122 1561.7812 7239.7 1 5.735 57.1 1 K.SHINVVVIGHVDSGK.S Jamie_phos_01_itms_24.14615.14615.3 3.9818 0.3217 100.0 3322.7344 3321.8418 8758.2 2 5.736 23.2 1 K.TLLEAIDAIEQPSRPTDKPLRLPLQDVYK.I YIL094C 1 1 9.4% 371 40069 8.0 U LYS12 SGDID:S000001356, Chr IX from 187629-186514, reverse complement, Verified ORF, "Homo-isocitrate dehydrogenase, an NAD-linked mitochondrial enzyme required for the fourth step in the biosynthesis of lysine, in which homo-isocitrate is oxidatively decarboxylated to alpha-ketoadipate" * Jamie_phos_01_itms_70.42176.42176.4 3.4447 0.2008 99.0 3653.0964 3653.0537 9657.0 270 3.84 21.1 1 R.LS*ACRGLASNAARKSLT*IGLIPGDGIGKEVIPAGK.Q YAL047C 4 7 9.3% 622 72105 5.1 U SPC72 SGDID:S000000045, Chr I from 56858-54990, reverse complement, Verified ORF, "Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization" * Jamie_phos_05_itms_9.14052.14052.2 2.0305 0.1155 92.7 1998.2322 1999.1761 9944.1 4 3.778 40.6 1 R.ETLEETLELSSDYVLEK.M * Jamie_phos_01_itms_29.17580.17580.3 3.7157 0.1765 99.8 2331.5044 2330.5542 5165.1 1 4.331 44.1 1 R.FEKT*LDT*QLEIVIEILHK.E * Jamie_phos_01_itms_29.17996.17996.3 3.3047 0.0661 92.8 1846.3444 1846.088 4741.8 1 3.349 60.7 1 K.TLDT*QLEIVIEILHK.E * Jamie_phos_02_itms_9.07916.07916.3 4.618 0.2635 100.0 2616.7144 2614.823 9515.1 1 5.533 42.0 4 K.LNEQSHLLDSLELEENSSSVIEK.Q YGL196W 1 1 9.3% 428 47828 7.6 U YGL196W SGDID:S000003164, Chr VII from 129888-131174, Uncharacterized ORF, "Putative protein of unknown function; deletion mutant is viable and has no detectable phenotype" * Jamie_phos_01_itms_55.33606.33606.4 3.1698 0.1123 92.9 4651.2563 4650.9395 9346.9 166 3.319 16.2 1 K.LTSSEIKEVIEPYGFY*AHAGHSY*SSTSINDTQNLLMEEVK.A YKL104C 4 6 9.2% 717 80047 6.4 U GFA1 SGDID:S000001587, Chr XI from 245017-242864, reverse complement, Verified ORF, "Glutamine-fructose-6-phosphate amidotransferase, catalyzes the formation of glucosamine-6-P and glutamate from fructose-6-P and glutamine in the first step of chitin biosynthesis" * Jamie_phos_01_itms_6.04261.04261.3 3.268 0.3295 100.0 1600.0443 1600.7405 3791.2 11 5.441 40.4 1 R.DVTFVSHCGIAHTR.W * Jamie_phos_03_itms_11.10954.10954.3 4.6068 0.1919 100.0 3263.5745 3263.4583 7280.7 9 4.499 25.9 3 R.HSQS*RAFLSEDGSPTPVEFFVSSDAASVVK.H * Jamie_phos_03_itms_11.10965.10965.3 4.9549 0.3055 100.0 3264.1143 3263.4583 7493.7 2 5.556 29.3 1 R.HS*QSRAFLSEDGSPTPVEFFVSSDAASVVK.H * Jamie_phos_03_itms_9.09565.09565.3 3.9045 0.2786 100.0 2650.0444 2649.9658 8001.7 1 6.104 34.5 1 K.KVLFLEDDDLAHIYDGELHIHR.S YNL308C 2 2 9.1% 591 68654 5.1 U KRI1 SGDID:S000005252, Chr XIV from 55896-54121, reverse complement, Verified ORF, "Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p" * Jamie_phos_02_itms_7.06155.06155.3 3.1379 0.1946 98.3 2680.5842 2680.8567 8071.6 17 4.411 29.3 1 R.MNILSGDALKEDDEEYEHATVDGK.Q * Jamie_phos_01_itms_29.17622.17622.3 4.385 0.2907 100.0 3581.0942 3581.6978 10007.8 3 6.245 28.4 1 K.VISLDLNNNEEDDEEFEDAAEKFENAYNFR.Y YPL237W 1 1 9.1% 285 31574 9.5 U SUI3 SGDID:S000006158, Chr XVI from 100496-101353, Verified ORF, "Beta subunit of the translation initiation factor eIF2, involved in the identification of the start codon; proposed to be involved in mRNA binding" * Jamie_phos_01_itms_24.14853.14853.2 2.5803 0.1136 96.0 2688.2322 2689.8872 11182.3 89 4.307 26.0 1 K.SVSADAEAEKEPTDDIAEALGELSLK.K YDR418W 1 2 9.1% 165 17823 9.4 U RPL12B SGDID:S000002826, Chr IV from 1301606-1302103, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins" YEL054C 1 2 9.1% 165 17823 9.4 U RPL12A SGDID:S000000780, Chr V from 53218-52721, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Bp; rpl12a rpl12b double mutant exhibits slow growth and slow translation; has similarity to E. coli L11 and rat L12 ribosomal proteins" Jamie_phos_01_itms_7.04450.04450.2 3.1704 0.2733 100.0 1299.1522 1298.4819 8317.3 1 5.9 67.9 2 R.AVGGEVGASAALAPK.I YLR340W 1 9 9.0% 312 33717 4.8 U RPP0 SGDID:S000004332, Chr XII from 805887-806825, Verified ORF, "Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302" * Jamie_phos_01_itms_37.22526.22526.3 6.3078 0.469 100.0 3186.7144 3185.5579 7382.8 1 7.663 32.4 9 K.DLLAVAIAASYHYPEIEDLVDRIENPEK.Y Reverse_YOR100C 1 1 8.9% 327 34754 9.8 U CRC1 SGDID:S000005626, Chr XV from 514278-513295, reverse complement, Verified ORF, "Mitochondrial inner membrane carnitine transporter, required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation" * Jamie_phos_01_itms_11.07174.07174.4 3.2806 0.0856 90.6 3173.2166 3169.5596 9177.2 340 3.389 22.0 1 K.FLSAIGGEKVITKAAQIFSGKS*ST*QLVVK.V Reverse_YLR372W 1 1 8.7% 345 39465 9.3 U SUR4 SGDID:S000004364, Chr XII from 867353-868390, Verified ORF, "Elongase, involved in fatty acid and sphingolipid biosynthesis; synthesizes very long chain 20-26-carbon fatty acids from C18-CoA primers; involved in regulation of sphingolipid biosynthesis" * Jamie_phos_02_itms_21.14910.14910.4 2.922 0.1466 94.2 3042.5366 3038.25 8945.9 41 4.355 22.4 1 R.SSVKTNS*TKVGTSSGSAVSGSVESEKKVTK.K Reverse_YKL108W 1 1 8.6% 453 52272 9.0 U SLD2 SGDID:S000001591, Chr XI from 234070-235431, Verified ORF, "Protein required for DNA replication, phosphorylated in S phase by S-phase cyclin-dependent kinases (Cdks), phosphorylation is essential for DNA replication and for complex formation with Dpb11p; potential Cdc28p substrate" * Jamie_phos_03_itms_38.27135.27135.4 3.3456 0.097 92.7 4401.5767 4397.5835 7914.7 132 2.895 16.2 1 K.ATPKQESS*VVGSSAEPDHEFETDSIQST*SGLFEAVKRRK.L YOR184W 1 1 8.6% 395 43416 6.5 U SER1 SGDID:S000005710, Chr XV from 679357-680544, Verified ORF, "3-phosphoserine aminotransferase, catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p" * Jamie_phos_01_itms_58.34998.34998.4 2.9526 0.1583 95.6 3731.2966 3735.226 9538.8 126 3.447 18.7 1 K.KSILKNIS*GASDETLHELGVPITPIAFDYPTVVK.N YGL245W 3 3 8.5% 708 80843 7.5 U GUS1 SGDID:S000003214, Chr VII from 39023-41149, Verified ORF, "Glutamyl-tRNA synthetase (GluRS), forms a complex with methionyl-tRNA synthetase (Mes1p) and Arc1p; complex formation increases the catalytic efficiency of both tRNA synthetases and ensures their correct localization to the cytoplasm" * Jamie_phos_01_itms_32.19548.19548.3 4.5072 0.3365 100.0 3140.1843 3140.4248 8652.9 1 5.491 27.9 1 R.FDDTNPSKEKEEFQDSILEDLDLLGIK.G * Jamie_phos_01_itms_29.17576.17576.4 6.0291 0.445 100.0 3469.1765 3468.7527 11020.7 1 8.071 31.0 1 R.FDDTNPSKEKEEFQDSILEDLDLLGIKGDR.I * Jamie_phos_03_itms_14.12304.12304.3 4.0896 0.27 100.0 3525.8342 3526.7485 11253.4 1 5.351 27.6 1 K.DRLEEDESFEDFLTPQTEFHTDAIADLNVK.D YKL046C 1 1 8.5% 449 49565 4.7 U DCW1 SGDID:S000001529, Chr XI from 352268-350919, reverse complement, Verified ORF, "Putative mannosidase, GPI-anchored membrane protein required for cell wall biosynthesis in bud formation;homologous to Dfg5p" * Jamie_phos_05_itms_31.27091.27091.4 3.2986 0.1065 93.3 4411.0566 4414.722 11899.9 24 3.584 18.5 1 R.WDADSCGGGLRWQIFVWNS*GYDYKNTVSNGALFHIAAR.L YGR279C 1 1 8.5% 386 40173 4.8 U SCW4 SGDID:S000003511, Chr VII from 1049964-1048804, reverse complement, Verified ORF, "Cell wall protein with similarity to glucanases; scw4 scw10 double mutants exhibit defects in mating" * Jamie_phos_01_itms_29.17811.17811.3 2.8778 0.206 97.7 3534.8643 3535.8525 8150.6 39 4.552 18.8 1 R.GITYTPYESSGACKSASEVASDLAQLTDFPVIR.L Reverse_YOR382W 1 1 8.5% 153 15302 8.4 U FIT2 SGDID:S000005909, Chr XV from 1059527-1059988, Verified ORF, "Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor, involved in the retention of siderophore-iron in the cell wall" * Jamie_phos_01_itms_16.09848.09848.2 1.8514 0.1305 93.8 1574.4521 1573.5272 9688.1 61 3.924 50.0 1 K.T*YTADSNSVVVT*R.T YNL061W 2 9 8.4% 618 69812 5.0 U NOP2 SGDID:S000005005, Chr XIV from 510541-512397, Verified ORF, "Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; localized to the nucleolus; constituent of 66S pre-ribosomal particles" * Jamie_phos_01_itms_13.08408.08408.4 5.8865 0.2942 100.0 2978.0566 2975.1873 7686.3 1 5.116 33.3 8 K.SRKEEEEVVEEDKDLPEVDLEELSK.A * Jamie_phos_02_itms_9.07718.07718.3 3.8655 0.2087 100.0 3202.1643 3202.409 7934.4 45 4.437 23.1 1 R.KEALEEGIIHSDFATFEDEEDDKYIEK.S Reverse_YGR154C 1 1 8.4% 356 41301 8.8 U YGR154C SGDID:S000003386, Chr VII from 797873-796803, reverse complement, Uncharacterized ORF, "Omega-class glutathione transferase" * Jamie_phos_01_itms_26.16042.16042.4 3.6365 0.1227 95.8 3496.9365 3492.9512 6103.4 172 3.331 20.7 1 K.QLNEFLT*KVETEYIKGNEALGVKYVGLNIK.P YDR515W 1 1 8.3% 447 50943 9.3 U SLF1 SGDID:S000002923, Chr IV from 1473419-1474762, Verified ORF, "RNA binding protein that associates with polysomes; proposed to be involved in regulating mRNA translation; involved in the copper-dependent mineralization of copper sulfide complexes on cell surface in cells cultured in copper salts" * Jamie_phos_02_itms_11.08565.08565.4 3.5913 0.1299 96.2 4063.4165 4059.52 8837.2 3 3.449 19.0 1 K.LAPIPTTSPWKSSSPDSNTVIPVEELRDISKT*AKPSK.N YHR068W 1 1 8.3% 387 42892 5.8 U DYS1 SGDID:S000001110, Chr VIII from 232135-233298, Verified ORF, "Deoxyhypusine synthase, catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric" * Jamie_phos_02_itms_10.08157.08157.3 2.8243 0.1429 93.5 3378.9543 3378.5059 8505.6 8 4.394 21.0 1 R.NGADYAVYINTGQEYDGSDAGARPDEAVSWGK.I YFR034C 1 3 8.3% 312 34089 7.8 U PHO4 SGDID:S000001930, Chr VI from 225946-225008, reverse complement, Verified ORF, "Basic helix-loop-helix (bHLH) transcription factor; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability" * Jamie_phos_01_itms_7.04486.04486.3 3.9557 0.351 100.0 2615.8442 2616.7178 6706.4 1 6.939 32.0 3 K.TSSSAEGVVVASES*PVIAPHGSSHSR.S YNL282W 1 1 8.2% 195 22612 9.6 U POP3 SGDID:S000005226, Chr XIV from 107687-108274, Verified ORF, "Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends" * Jamie_phos_02_itms_22.15342.15342.2 1.7704 0.1318 92.3 1789.3522 1792.1265 10694.5 97 3.214 36.7 1 R.PTSVKLLKTT*VPIVSK.K YDL013W 2 2 8.1% 619 71071 6.7 U HEX3 SGDID:S000002171, Chr IV from 429064-430923, Verified ORF, "Ring finger protein involved in the DNA damage response with possible recombination role; genetically identified by synthetic lethality with SGS1 (DNA helicase) and TOP3 (DNA topoisomerase); sporulation role; interacts with Slx8p and Lin1p" * Jamie_phos_05_itms_22.22022.22022.3 2.7062 0.1368 91.7 3308.0044 3308.3853 9812.8 5 4.079 26.0 1 R.DALNRFVRSDSRSRNSQRTHITAS*S*ER.P * Jamie_phos_01_itms_59.35880.35880.3 3.2637 0.1163 94.3 3040.9443 3044.2947 8499.8 74 3.448 26.1 1 K.Y*KFHCPYQTLARPSMLDRDLS*KR.T YLR314C 1 1 8.1% 520 60039 5.5 U CDC3 SGDID:S000004306, Chr XII from 764137-762575, reverse complement, Verified ORF, "Component of the septin ring of the mother-bud neck that is required for cytokinesis; septins recruit proteins to the neck and can act as a barrier to diffusion at the membrane, and they comprise the 10nm filaments seen with EM" * Jamie_phos_01_itms_25.15212.15212.4 4.0017 0.2117 100.0 4895.0166 4895.943 8171.2 15 5.194 16.3 1 K.TLFNNDDIEANLVKDYEEELANDQEEEEGQGEGHENQSQEQR.H YPR165W 1 1 8.1% 209 23152 6.2 U RHO1 SGDID:S000006369, Chr XVI from 875364-875993, Verified ORF, "GTP-binding protein of the rho subfamily of Ras-like proteins, involved in establishment of cell polarity; regulates protein kinase C (Pkc1p) and the cell wall synthesizing enzyme 1,3-beta-glucan synthase (Fks1p and Gsc2p)" * Jamie_phos_03_itms_7.07921.07921.2 2.8105 0.3055 100.0 2037.7122 2038.1809 8287.9 1 5.666 53.1 1 R.RVELALWDTAGQEDYDR.L Reverse_YDR036C 1 1 8.0% 500 56288 8.3 U EHD3 SGDID:S000002443, Chr IV from 524709-523207, reverse complement, Verified ORF, "Protein of unconfirmed function, plays an indirect role in endocytic membrane trafficking, member of a family of enoyl-CoA hydratase/isomerases" * Jamie_phos_01_itms_54.32630.32630.4 3.693 0.2052 99.8 4598.4966 4598.021 11838.5 334 4.547 16.7 1 K.IEQAFAKGEASGEYQRLNNMIDEIT*GNKSLNFCAEIVNLK.E YHR203C 1 4 8.0% 261 29410 10.1 U RPS4B SGDID:S000001246, Chr VIII from 505530-505517,505247-504476, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps4Bp and has similarity to rat S4 ribosomal protein" YJR145C 1 4 8.0% 261 29410 10.1 U RPS4A SGDID:S000003906, Chr X from 702983-702970,702713-701942, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein" Jamie_phos_02_itms_11.08799.08799.3 5.1941 0.3863 100.0 2387.4844 2387.614 9570.3 1 7.182 41.2 4 R.HDGGFDLVHIKDSLDNTFVTR.L YBR242W 1 1 8.0% 238 27577 6.9 U YBR242W SGDID:S000000446, Chr II from 704665-705381, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_39.23633.23633.2 2.0862 0.2017 99.1 2285.9922 2286.3403 7139.9 19 4.221 33.3 1 K.KSCSGS*VEAGKT*RLTTEWK.P Reverse_YML092C 1 1 8.0% 250 27162 5.7 U PRE8 SGDID:S000004557, Chr XIII from 86739-85987, reverse complement, Verified ORF, "20S proteasome beta-type subunit" * Jamie_phos_05_itms_32.27876.27876.2 1.9752 0.1289 94.7 2162.4922 2164.3918 8800.9 14 4.21 31.6 1 R.YDPGMGSYVAGIDPT*LLSVK.S YOL109W 1 1 8.0% 113 12589 5.4 U ZEO1 SGDID:S000005469, Chr XV from 110296-110637, Verified ORF, "Peripheral membrane protein of the plasma membrane that interacts with Mid2p; regulates the cell integrity pathway mediated by Pkc1p and Slt2p" * Jamie_phos_02_itms_12.09606.09606.2 1.3449 0.1705 93.2 888.8522 890.9689 1591.4 75 4.344 56.2 1 K.QASAAVSEK.K YDR181C 1 1 7.9% 481 55410 9.5 U SAS4 SGDID:S000002589, Chr IV from 827350-825905, reverse complement, Verified ORF, "Subunit of the SAS complex (Sas2p, Sas4p, Sas5p), which acetylates free histones and nucleosomes and regulates transcriptional silencing; required for the HAT activity of Sas2p" * Jamie_phos_04_itms_36.28472.28472.4 2.8246 0.1546 94.4 4088.6165 4087.4314 8605.5 381 3.775 16.2 1 K.SKEMNALRNNAASISPTLSEKAPLGSISSCT*ASQISQR.S Reverse_YMR239C 1 1 7.9% 471 54071 8.6 U RNT1 SGDID:S000004852, Chr XIII from 749676-748261, reverse complement, Verified ORF, "RNAase III; cleaves a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end" * Jamie_phos_01_itms_36.22271.22271.4 3.8617 0.0947 95.4 4404.5767 4409.0234 7551.3 313 2.995 17.6 1 -.ST*DSFKRKKNKQSPDKLVSESRPIAARQKAYFDLMKK.D YER098W 2 2 7.8% 754 86244 7.4 U UBP9 SGDID:S000000900, Chr V from 355462-357726, Verified ORF, "Ubiquitin-specific protease that cleaves ubiquitin-protein fusions" * Jamie_phos_02_itms_30.20262.20262.4 4.3644 0.2381 100.0 4373.6167 4374.726 10754.2 116 4.517 17.1 1 R.KATSLKKTKGSGDPSIAKSPSAKSSTS*S*IPSNLASHERRSK.F * Jamie_phos_04_itms_36.28548.28548.2 1.8173 0.144 95.2 2267.2922 2267.4106 7284.9 11 3.441 35.3 1 R.NEKFGWLLYDDETVES*IK.E Reverse_YML107C 1 1 7.8% 334 39207 9.0 U PML39 SGDID:S000004575, Chr XIII from 56269-55265, reverse complement, Verified ORF, "Protein required for nuclear retention of unspliced pre-mRNAs along with Mlp1p and Pml1p; anchored to the nuclear pore complex via Mlp1p and Mlp2p; associated with the subset of nuclear pores farthest from the nucleolus" * Jamie_phos_01_itms_53.32211.32211.3 2.7725 0.1252 90.7 3365.7544 3366.8513 10774.7 61 3.852 24.0 1 K.KKYRWKTILREGLT*NRYKGPLLKT*NK.D YHL033C 1 1 7.8% 256 28125 10.0 U RPL8A SGDID:S000001025, Chr VIII from 36023-35253, reverse complement, Verified ORF, "Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits" YLL045C 1 1 7.8% 256 28112 10.0 U RPL8B SGDID:S000003968, Chr XII from 48628-47858, reverse complement, Verified ORF, "Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has similarity to rat L7a ribosomal protein; mutation results in decreased amounts of free 60S subunits" Jamie_phos_02_itms_7.06505.06505.2 2.8839 0.344 100.0 2016.3722 2017.2438 6560.9 4 5.822 44.7 1 K.TSAVAALTEVRAEDEAALAK.L Reverse_YDR183W 1 1 7.8% 230 26623 5.2 U PLP1 SGDID:S000002591, Chr IV from 829580-830272, Verified ORF, "Protein with a possible role in folding of beta-tubulin; has similarity to phosducins, which are GTPase inhibitors" * Jamie_phos_01_itms_8.05128.05128.2 1.8804 0.1253 92.4 2147.4722 2146.105 3915.7 123 3.653 32.4 1 -.IDLDSDS*ESRDHNTSAFR.E YBR197C 1 1 7.8% 217 24203 9.1 U YBR197C SGDID:S000000401, Chr II from 615851-615198, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR197C is not an essential gene" * Jamie_phos_01_itms_30.18438.18438.2 1.927 0.1687 96.9 1878.7722 1877.0616 6581.2 122 3.854 34.4 1 K.NLTTPPALNPLT*TSISR.G YDR055W 1 1 7.7% 444 45777 9.2 U PST1 SGDID:S000002462, Chr IV from 563524-564858, Verified ORF, "Cell wall protein that contains a putative GPI-attachment site; secreted by regenerating protoplasts; up-regulated by activation of the cell integrity pathway, as mediated by Rlm1p; upregulated by cell wall damage via disruption of FKS1" * Jamie_phos_04_itms_27.22866.22866.4 2.4837 0.1594 91.9 3332.0964 3333.4583 10769.7 304 3.548 19.2 1 K.AEEKKFTSGDIKAAASASSVSS*SGASSSSSKSSK.G YDL137W 1 2 7.7% 181 20658 7.4 U ARF2 SGDID:S000002296, Chr IV from 216529-217074, Verified ORF, "ADP-ribosylation factor, GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi; functionally interchangeable with Arf1p" * Jamie_phos_03_itms_7.08049.08049.2 3.1055 0.3212 100.0 1579.6721 1579.7068 10925.4 1 6.941 57.7 2 R.NTEGVIFVIDSNDR.S Reverse_YBR006W 1 1 7.6% 497 54189 6.6 U UGA2 SGDID:S000000210, Chr II from 247012-248505, Verified ORF, "Succinate semialdehyde dehydrogenase involved in the utilization of gamma-aminobutyrate (GABA) as a nitrogen source; part of the 4-aminobutyrate and glutamate degradation pathways; localized to the cytoplasm" * Jamie_phos_03_itms_39.27445.27445.4 2.9498 0.1179 91.9 4523.0566 4526.024 8615.5 44 3.305 18.5 1 R.ITFVRNHPNLPQITAGYLRPAEEAY*WEFYSAAYKIEGK.A YBR003W 1 1 7.6% 473 52560 8.8 U COQ1 SGDID:S000000207, Chr II from 242811-244232, Verified ORF, "Hexaprenyl pyrophosphate synthetase, catalyzes the first step in ubiquinone (coenzyme Q) biosynthesis" * Jamie_phos_03_itms_14.12253.12253.4 3.3487 0.0772 90.1 3943.8965 3938.575 9545.9 87 3.376 17.6 1 K.SSFAVALNAASKLVTPKILWNNPIS*LVSKEMNTLAK.N YMR309C 2 3 7.5% 812 93204 5.0 U NIP1 SGDID:S000004926, Chr XIII from 895425-892987, reverse complement, Verified ORF, "Subunit of the eukaryotic translation initiation factor 3 (eIF3), involved in the assembly of preinitiation complex and start codon selection" * Jamie_phos_02_itms_5.04675.04675.3 3.1567 0.2812 100.0 2583.0244 2582.8765 5387.4 14 5.98 28.3 1 K.VVAQVEDAVNNTQQADLKNKAVAR.A * Jamie_phos_01_itms_31.19184.19184.4 4.7938 0.2459 100.0 4269.9365 4270.647 7106.9 1 4.708 22.2 2 K.LLSILDQTIDTYQVNEFADPIDFIEDEPKEDSDGVKR.I YML106W 1 1 7.5% 226 24664 6.0 U URA5 SGDID:S000004574, Chr XIII from 56773-57453, Verified ORF, "One of two orotate phosphoribosyltransferase isozymes (see also URA10) that catalyze the fifth enzymatic step in de novo biosynthesis of pyrimidines, converting orotate into orotidine-5'-phosphate" * Jamie_phos_01_itms_7.04469.04469.3 3.2112 0.2586 100.0 1752.8043 1752.9248 6239.3 1 5.532 40.6 1 K.DHGEGGIIVGSALENKR.I YDR002W 1 1 7.5% 201 22953 6.1 U YRB1 SGDID:S000002409, Chr IV from 453042-453647, Verified ORF, "Ran GTpase binding protein; involved in nuclear protein import and RNA export, ubiquitin-mediated protein degradation during the cell cycle; shuttles between the nucleus and cytoplasm; is essential; homolog of human RanBP1" * Jamie_phos_01_itms_42.25432.25432.2 2.2833 0.0922 92.3 1854.1122 1856.9384 9913.1 1 2.949 50.0 1 K.KAEKPETKKDEEDT*K.E Reverse_YNL330C 1 1 7.4% 433 48904 5.5 U RPD3 SGDID:S000005274, Chr XIV from 19302-18001, reverse complement, Verified ORF, "Histone deacetylase; regulates transcription and silencing" * Jamie_phos_01_itms_28.17358.17358.4 3.3756 0.0764 90.1 3847.3364 3842.1565 7331.7 126 3.567 19.9 1 R.IRHPKMPHGAGYAYNGVDADY*FY*AVRRKDSPK.V YKR048C 1 1 7.4% 417 47885 4.3 U NAP1 SGDID:S000001756, Chr XI from 526282-525029, reverse complement, Verified ORF, "Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamics during mitosis; controls bud morphogenesis; involved in the transport of H2A and H2B histones to the nucleus" * Jamie_phos_01_itms_22.13391.13391.3 3.524 0.2677 100.0 3561.2644 3562.731 6603.7 7 5.126 22.5 1 K.GQEIVESLNETELLVDEEEKAQNDSEEEQVK.G YGL001C 1 1 7.4% 349 38706 6.7 U ERG26 SGDID:S000002969, Chr VII from 496506-495457, reverse complement, Verified ORF, "C-3 sterol dehydrogenase, catalyzes the second of three steps required to remove two C-4 methyl groups from an intermediate in ergosterol biosynthesis" * Jamie_phos_01_itms_35.21506.21506.3 3.5433 0.271 90.9 2873.6042 2872.253 9137.3 12 5.033 23.0 1 N.NLFDWTYAGNVADAHVLAAQKLLDPK.T YLR195C 1 1 7.3% 455 52838 7.4 U NMT1 SGDID:S000004185, Chr XII from 543306-541939, reverse complement, Verified ORF, "N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction" * Jamie_phos_05_itms_16.18292.18292.4 2.9746 0.1428 94.3 3941.6565 3940.398 10887.4 31 3.475 19.3 1 K.QVIFSYVVEQPDGKITDFFSFY*SLPFTILNNTK.Y YLL063C 1 1 7.2% 474 52837 7.4 U AYT1 SGDID:S000003986, Chr XII from 16072-14648, reverse complement, Verified ORF, "Acetyltransferase; catalyzes trichothecene 3-O-acetylation, suggesting a possible role in trichothecene biosynthesis" * Jamie_phos_05_itms_18.19320.19320.4 3.3545 0.1369 95.9 3880.6165 3879.3403 9917.5 310 3.633 18.2 1 K.SNLGRAVDVRKRLGLPETYPGLLVNMT*FNTGS*LK.S YCR107W 1 1 7.2% 363 40911 6.8 U AAD3 SGDID:S000000704, Chr III from 313886-314977, Verified ORF, "Putative aryl-alcohol dehydrogenase with similarity to P. chrysosporium aryl-alcohol dehydrogenase; mutational analysis has not yet revealed a physiological role" * Jamie_phos_01_itms_32.19689.19689.3 2.93 0.1732 96.0 2821.9443 2824.1174 6942.8 9 3.446 25.0 1 K.IS*EALAKIAEEHGTESVTAIAIAYVR.S YER179W 1 1 7.2% 334 36613 5.9 U DMC1 SGDID:S000000981, Chr V from 548416-548547,548640-549512, Verified ORF, "Meiosis-specific protein required for repair of double-strand breaks and pairing between homologous chromosomes; homolog of Rad51p and the bacterial RecA protein" * Jamie_phos_04_itms_14.15191.15191.3 2.643 0.1377 90.9 2646.4443 2641.9587 8673.1 12 3.575 27.2 1 R.EMGGGEGKVAYIDTEGTFRPERIK.Q YLR441C 1 1 7.1% 255 28743 10.0 U RPS1A SGDID:S000004433, Chr XII from 1018904-1018137, reverse complement, Verified ORF, "Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein" YML063W 1 1 7.1% 255 28812 10.0 U RPS1B SGDID:S000004528, Chr XIII from 146482-147249, Verified ORF, "Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarity to rat S3a ribosomal protein" Jamie_phos_04_itms_6.09424.09424.2 2.2106 0.1087 94.0 1847.0721 1848.0375 7281.8 2 4.472 44.1 1 K.FDVGALMALHGEGSGEEK.G YDR381W 2 2 7.1% 226 24956 11.3 U YRA1 SGDID:S000002789, Chr IV from 1236548-1236832,1237599-1237994, Verified ORF, "Nuclear protein that binds to RNA and to Mex67p, required for export of poly(A)+ mRNA from the nucleus; member of the REF (RNA and export factor binding proteins) family; another family member, Yra2p, can substitute for Yra1p function" * Jamie_phos_01_itms_23.14363.14363.2 3.1884 0.264 100.0 1832.9922 1834.0046 6343.9 1 5.909 57.1 1 K.SLEDLDKEMADYFEK.K * Jamie_phos_01_itms_20.12494.12494.3 3.0268 0.2379 100.0 1963.3444 1962.1787 5349.2 1 4.484 41.7 1 K.SLEDLDKEMADYFEKK.- YML028W 1 4 7.1% 196 21590 5.1 U TSA1 SGDID:S000004490, Chr XIII from 220138-220728, Verified ORF, "Ubiquitous housekeeping thioredoxin peroxidase, reduces reactive oxygen, nitrogen and sulfur species using thioredoxin as hydrogen donor; mediates redox regulation of the nuclear localization of Yap1p; deletion results in mutator phenotype" * Jamie_phos_03_itms_9.09756.09756.2 4.3215 0.4316 100.0 1563.2722 1563.7478 9412.3 1 7.598 76.9 4 R.DYGVLIEEEGVALR.G YKR002W 1 1 7.0% 568 64552 7.9 U PAP1 SGDID:S000001710, Chr XI from 442875-444581, Verified ORF, "Poly(A) polymerase, one of three factors required for mRNA 3'-end polyadenylation, forms multiprotein complex with polyadenylation factor I (PF I), also required for mRNA nuclear export; may also polyadenylate rRNAs" * Jamie_phos_02_itms_25.17034.17034.4 3.4114 0.1506 97.4 4374.7363 4371.8003 4902.1 194 3.394 17.9 1 K.KNMS*DGMARDAGGKIFTY*GSYRLGVHGPGSDIDTLVVVPK.H YNL301C 1 3 7.0% 186 20563 11.7 U RPL18B SGDID:S000005245, Chr XIV from 64562-64451,64018-63570, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein" YOL120C 1 3 7.0% 186 20563 11.7 U RPL18A SGDID:S000005480, Chr XV from 94401-94290,93842-93394, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation" Jamie_phos_03_itms_5.05252.05252.2 3.8837 0.3615 100.0 1332.3722 1332.4967 6937.7 1 7.085 79.2 3 K.TVVVVGTVTDDAR.I YLR045C 2 2 6.9% 888 100918 8.6 U STU2 SGDID:S000004035, Chr XII from 237704-235038, reverse complement, Verified ORF, "Microtubule-associated protein (MAP) of the XMAP215/Dis1 family; regulates microtubule dynamics during spindle orientation and metaphase chromosome alignment; interacts with spindle pole body component Spc72p" * Jamie_phos_01_itms_47.28791.28791.4 3.14 0.1014 91.5 3781.8164 3782.1309 8636.3 32 3.648 20.3 1 K.TLPNFSIASGST*HSTIET*NKQTGPMENKFLLKK.S * Jamie_phos_05_itms_7.12530.12530.3 2.9198 0.1391 93.7 3056.9343 3056.1365 5266.5 1 3.874 29.6 1 K.NGTGVSSVSDDLDIDFNDSFASEESYKR.A Reverse_YKL188C 2 2 6.9% 853 97126 8.9 U PXA2 SGDID:S000001671, Chr XI from 88791-86230, reverse complement, Verified ORF, "Subunit of a heterodimeric peroxisomal ATP-binding cassette transporter complex (Pxa1p-Pxa2p), required for import of long-chain fatty acids into peroxisomes; similarity to human adrenoleukodystrophy transporter and ALD-related proteins" * Jamie_phos_01_itms_17.10515.10515.4 3.0422 0.1157 92.2 2656.0566 2658.8447 6759.4 444 3.506 23.9 1 R.KS*TEQGTPSTIRQGKNANFLANSK.S * Jamie_phos_01_itms_45.27222.27222.4 3.6988 0.2799 92.0 4061.1765 4060.1963 10410.9 55 5.179 17.6 1 G.DESDT*SHKSVITLEEKSSEDEERDVATEKGEEIKK.N YGR041W 1 1 6.9% 547 60751 6.7 U BUD9 SGDID:S000003273, Chr VII from 577491-579134, Verified ORF, "Protein involved in bud-site selection; diploid mutants display a unipolar budding pattern instead of the wild-type bipolar pattern, and bud at the distal pole" * Jamie_phos_03_itms_41.28495.28495.4 3.7865 0.2852 100.0 3862.4565 3866.8909 9498.4 268 4.991 18.9 1 R.NSSNGSSAETNLNGHSSSGTIS*TSVLLNMGSAEKHAGT*.T Reverse_YLL002W 1 1 6.9% 436 50096 9.4 U RTT109 SGDID:S000003925, Chr XII from 146290-147600, Verified ORF, "Protein with a role in regulation of Ty1 transposition" * Jamie_phos_03_itms_38.27009.27009.4 3.285 0.1923 98.2 3543.5764 3548.9304 8193.3 179 4.255 21.3 1 K.PDDPFLPINYVALS*NEKSTFIDGVQWLPYK.M YDL027C 1 1 6.9% 420 48312 9.9 U YDL027C SGDID:S000002185, Chr IV from 404954-403692, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_15.09159.09159.4 3.5813 0.0884 93.7 3291.4565 3294.595 8431.3 26 3.456 22.0 1 K.ILQES*ETSNSS*KTLNTIIAIKSVNTLLSK.H Reverse_YER028C 1 1 6.9% 394 43119 9.9 U MIG3 SGDID:S000000830, Chr V from 211875-210691, reverse complement, Verified ORF, "Probable transcriptional repressor involved in response to toxic agents such as hydroxyurea that inhibit ribonucleotide reductase; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes" * Jamie_phos_02_itms_21.15150.15150.4 3.5257 0.0914 93.5 3333.6165 3332.4602 8469.4 14 3.683 22.4 1 R.KLEDSRS*FSKPCGQVTCKHPKEGT*HTR.G Reverse_YPL272C 1 1 6.8% 517 59389 6.0 U YPL272C SGDID:S000006193, Chr XVI from 28164-26611, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_27.16430.16430.4 3.2008 0.1062 92.3 3979.8965 3981.2358 9082.9 210 3.64 17.6 1 R.KLT*TAILPLTLRSDDKSSNTGLTVEDSHWDADNER.S YBL100W-A 1 1 6.8% 438 49898 7.5 U YBL100W-A SGDID:S000002148, Chr II from 29932-31248, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YOR343W-A 1 1 6.8% 438 49868 7.5 U YOR343W-A SGDID:S000007355, Chr XV from 970573-971889, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YOR192C-A 1 1 6.8% 438 49736 7.9 U YOR192C-A SGDID:S000007353, Chr XV from 709732-708416, reverse complement, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YLR410W-A 1 1 6.8% 438 49772 7.7 U YLR410W-A SGDID:S000007379, Chr XII from 941480-942796, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YGR161W-A 1 1 6.8% 438 49762 7.2 U YGR161W-A SGDID:S000007369, Chr VII from 811743-813059, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YFL002W-B 1 1 6.8% 438 49762 7.2 U YFL002W-B SGDID:S000007404, Chr VI from 138199-139515, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YDR261W-A 1 1 6.8% 438 49724 7.7 U YDR261W-A SGDID:S000007396, Chr IV from 981456-982772, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YDR034C-C 1 1 6.8% 438 49689 7.7 U YDR034C-C SGDID:S000007344, Chr IV from 519352-518036, reverse complement, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" YCL020W 1 1 6.8% 438 49841 7.5 U YCL020W SGDID:S000000525, Chr III from 85101-86417, transposable_element_gene, "TyA Gag protein; the main structural constituent of virus-like particles (VLPs)" Jamie_phos_02_itms_6.05788.05788.3 3.5378 0.3115 100.0 3485.8442 3485.573 2835.6 2 5.089 24.1 1 R.VNNDHINESTVSSQYLS*DDNELSLRPATER.I YBR177C 1 1 6.7% 451 51255 7.8 U EHT1 SGDID:S000000381, Chr II from 586157-584802, reverse complement, Verified ORF, "Possible serine hydrolase, may be involved in lipid metabolism, null mutant slightly temperature sensitive at 37C" * Jamie_phos_04_itms_27.23056.23056.4 2.6346 0.184 95.7 3532.6965 3533.8442 11495.0 132 4.045 18.4 1 K.WPAINPFHWGY*NGTVSHIVGENGS*IKLHLK.D YGR285C 1 1 6.7% 433 49020 8.3 U ZUO1 SGDID:S000003517, Chr VII from 1063159-1061858, reverse complement, Verified ORF, "Cytosolic ribosome-associated chaperone, contains a DnaJ domain; together with Ssz1p, acts as a chaperone for nascent polypeptide chains" * Jamie_phos_01_itms_29.17540.17540.3 3.1621 0.1876 97.7 3288.8044 3289.4443 4918.5 63 4.199 21.4 1 K.TVDESNVDPDELLFDTELADEDLLTHDAR.D YDR171W 2 3 6.7% 375 42817 5.1 U HSP42 SGDID:S000002578, Chr IV from 806616-807743, Verified ORF, "Small cytosolic stress-induced chaperone that forms barrel-shaped oligomers and suppresses the aggregation of non-native proteins; oligomer dissociation is not required for function; involved in cytoskeleton reorganization after heat shock" * Jamie_phos_01_itms_16.09749.09749.3 4.0547 0.2795 100.0 2955.1143 2956.1895 5990.0 1 6.248 32.3 2 K.KRIAIEEIPDEELEFEENPNPTVEN.- * Jamie_phos_01_itms_24.14871.14871.2 3.7041 0.3406 100.0 2671.632 2671.828 8801.6 1 6.906 47.7 1 R.IAIEEIPDEELEFEENPNPTVEN.- Reverse_YJR144W 1 1 6.7% 269 30090 9.3 U MGM101 SGDID:S000003905, Chr X from 700797-701606, Verified ORF, "Protein involved in mitochondrial genome maintenance; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage" * Jamie_phos_02_itms_21.14635.14635.2 1.5292 0.1911 96.0 1880.1721 1881.9083 7425.2 2 3.268 35.3 1 R.VAGAT*ATNSTGTSVVT*RK.Q YGL123W 1 2 6.7% 254 27450 10.4 U RPS2 SGDID:S000003091, Chr VII from 277623-278387, Verified ORF, "Protein component of the small (40S) subunit, essential for control of translational accuracy; has similarity to E. coli S5 and rat S2 ribosomal proteins" * Jamie_phos_02_itms_9.07566.07566.2 2.7323 0.1358 98.1 1837.0122 1836.052 9857.4 1 4.685 53.1 2 K.LLQLAGVEDVYTQSNGK.T YLR429W 1 1 6.5% 651 72553 5.9 U CRN1 SGDID:S000004421, Chr XII from 990773-992728, Verified ORF, "Coronin, cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity" * Jamie_phos_01_itms_60.36387.36387.4 3.2833 0.1315 95.4 4399.2563 4402.7275 9359.5 449 3.567 15.4 1 K.SPEQEKSATPPSSIT*AAKT*AITASSKEEPSAARTSPKSLGLK.K YPL097W 1 1 6.5% 492 55287 9.1 U MSY1 SGDID:S000006018, Chr XVI from 364949-366427, Verified ORF, "Mitochondrial tyrosyl-tRNA synthetase" * Jamie_phos_01_itms_50.30135.30135.3 3.0326 0.1614 95.9 3822.1143 3824.3262 8112.0 1 4.13 23.4 1 K.IFT*FLNSSEIKKIVETHIKSPSLRYGQT*LLAK.E Reverse_YNL166C 1 1 6.5% 448 49694 4.9 U BNI5 SGDID:S000005110, Chr XIV from 323567-322221, reverse complement, Verified ORF, "Protein involved in organization of septins at the mother-bud neck, may interact directly with the Cdc11p septin, localizes to bud neck in a septin-dependent manner" * Jamie_phos_04_itms_35.27846.27846.3 2.9809 0.1336 93.6 3277.0444 3279.4736 7733.2 38 3.974 20.5 1 K.NAS*S*FKDLVLEADLKNEGGLTNNQPMPSK.F YHR169W 1 1 6.5% 431 47879 9.6 U DBP8 SGDID:S000001212, Chr VIII from 442182-443477, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 40S ribosomal subunit" * Jamie_phos_04_itms_14.15369.15369.4 2.6878 0.158 93.7 3063.6565 3068.4553 10382.1 3 3.746 24.7 1 K.PHFIIAT*PGRLAHHIMSSGDDTVGGLMR.A YPR162C 1 1 6.4% 529 60706 6.8 U ORC4 SGDID:S000006366, Chr XVI from 868300-866711, reverse complement, Verified ORF, "Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing" * Jamie_phos_03_itms_25.19379.19379.4 3.269 0.1045 92.9 4089.5764 4085.3105 11681.9 237 4.026 17.2 1 R.T*IDNEKCKDSDPGFGSLQRRLLQQLYGT*LPTDEK.I YDR233C 1 1 6.4% 295 32916 9.0 U RTN1 SGDID:S000002641, Chr IV from 930351-929464, reverse complement, Verified ORF, "Protein of unknown function; has similarity to mammalian reticulon proteins; member of the RTNLA (reticulon-like A) subfamily" * Jamie_phos_05_itms_11.15098.15098.2 1.6919 0.1193 90.2 1964.2922 1966.9677 10245.8 3 3.645 38.9 1 K.S*KTAPVS*STAGPQTASTSK.L Reverse_YHR078W 1 1 6.3% 552 63331 7.4 U YHR078W SGDID:S000001120, Chr VIII from 256362-258020, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_03_itms_37.26154.26154.4 2.9674 0.1284 92.9 4139.8965 4141.4844 8092.7 13 3.752 19.6 1 R.LS*QLVKHSPLSYETYFKNIFNGMSSVDENS*GVEMK.S YML085C 2 3 6.3% 447 49800 5.1 U TUB1 SGDID:S000004550, Chr XIII from 99400-99376,99259-97941, reverse complement, Verified ORF, "Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules" YML124C 2 3 6.3% 445 49694 5.2 U TUB3 SGDID:S000004593, Chr XIII from 23684-23660,23361-22049, reverse complement, Verified ORF, "Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules; expressed at lower level than Tub1p" Jamie_phos_03_itms_14.12679.12679.3 2.9731 0.1328 93.7 3243.6243 3243.531 6949.7 1 3.621 24.1 1 R.AFVHWYVGEGMEEGEFTEAREDLAALER.D Jamie_phos_04_itms_12.13702.13702.4 5.0481 0.3007 100.0 3243.8564 3243.531 7561.5 1 6.002 28.4 2 R.AFVHWYVGEGMEEGEFTEAREDLAALER.D YDR083W 1 1 6.3% 383 44729 9.2 U RRP8 SGDID:S000002490, Chr IV from 612069-613220, Verified ORF, "Protein involved in rRNA processing; involved in pre-rRNA cleavage at site A2; mutation is synthetically lethal with a gar1 mutation" * Jamie_phos_02_itms_6.05666.05666.3 4.0219 0.3707 100.0 2659.5244 2659.9043 7371.6 1 6.698 35.9 1 K.LKEETEAELKEQVEDIPSEGSVAK.D Reverse_YLR413W 1 1 6.2% 675 72698 5.1 U YLR413W SGDID:S000004405, Chr XII from 951152-953179, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery" * Jamie_phos_03_itms_13.11704.11704.4 3.6959 0.0803 93.4 4666.2964 4671.1045 9780.4 5 3.805 17.5 1 K.LSSFLS*SVTSTPITSNMITELADCTAT*INKSSAFLEFVPSLK.T Reverse_YMR120C 1 1 6.2% 592 65263 6.6 U ADE17 SGDID:S000004727, Chr XIII from 509279-507501, reverse complement, Verified ORF, "Enzyme of 'de novo' purine biosynthesis containing both 5-aminoimidazole-4-carboxamide ribonucleotide transformylase and inosine monophosphate cyclohydrolase activities, isozyme of Ade16p; ade16 ade17 mutants require adenine and histidine" * Jamie_phos_01_itms_43.26082.26082.4 3.9504 0.0482 91.6 4119.3364 4115.7173 10903.3 240 3.155 17.6 1 K.IAITAVTLDIIAQETLNKNQSVIEKFTSQNIIADNRK.Q YDR312W 1 1 6.2% 453 51856 9.0 U SSF2 SGDID:S000002720, Chr IV from 1087576-1088937, Verified ORF, "Protein required for ribosomal large subunit maturation, functionally redundant with Ssf1p; member of the Brix family" YHR066W 1 1 6.2% 453 51764 9.3 U SSF1 SGDID:S000001108, Chr VIII from 229337-230698, Verified ORF, "Constituent of 66S pre-ribosomal particles, required for ribosomal large subunit maturation; functionally redundant with Ssf2p; member of the Brix family" Jamie_phos_01_itms_50.30176.30176.3 2.8847 0.147 94.2 3248.0645 3243.816 9846.3 38 3.803 23.1 1 R.KSNKLKDFVVMCGPLGVTHLFMFTQSEK.T Reverse_YIL006W 1 1 6.2% 373 41954 8.6 U YIA6 SGDID:S000001268, Chr IX from 344059-345180, Verified ORF, "Mitochondrial NAD+ transporter, involved in the transport of NAD+ into the mitochondria (see also YEA6); member of the mitochondrial carrier subfamily; disputed role as a pyruvate transporter; has putative mouse and human orthologs" * Jamie_phos_02_itms_37.24235.24235.3 2.5198 0.1653 93.2 2677.1343 2679.0356 11107.5 19 4.334 23.9 1 R.LIEHPYTVASAIMKS*VS*SAMILR.Q YDR130C 1 1 6.2% 291 33186 9.8 U FIN1 SGDID:S000002537, Chr IV from 716617-715742, reverse complement, Verified ORF, "Spindle pole body-related intermediate filament protein, forms cell cycle-specific filaments between spindle pole bodies in mother and daughter cells, able to self-assemble, expression induced during S/G2, localization cell-cycle dependent" * Jamie_phos_02_itms_49.31658.31658.2 1.8709 0.1082 90.5 2132.872 2131.1807 9796.9 62 3.619 32.4 1 R.SLRDIGNT*IGRNNIPS*DK.D YDR385W 3 10 6.1% 842 93289 6.3 U EFT2 SGDID:S000002793, Chr IV from 1243220-1245748, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin" YOR133W 3 10 6.1% 842 93289 6.3 U EFT1 SGDID:S000005659, Chr XV from 575098-577626, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin" Jamie_phos_02_itms_7.06601.06601.2 4.4207 0.391 100.0 2146.7322 2146.371 7995.7 1 7.41 61.1 7 K.STAISLYSEMSDEDVKEIK.Q Jamie_phos_02_itms_5.04974.04974.2 2.3506 0.1969 99.5 1686.1122 1686.9432 6553.0 1 4.766 42.9 2 K.LEIVLKGDEKDLEGK.A Jamie_phos_01_itms_15.09130.09130.3 3.7587 0.1995 100.0 2111.9944 2110.3484 7140.3 2 4.544 42.2 1 R.HGMKEEVPGWQEYYDKL.- Reverse_YMR136W 1 1 6.1% 560 63139 8.7 U GAT2 SGDID:S000004744, Chr XIII from 541198-542880, Verified ORF, "Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine" * Jamie_phos_03_itms_3.02807.02807.4 4.0986 0.106 96.9 3924.0166 3923.529 10436.3 363 4.648 16.7 1 R.LLLNSSKSGFKKTVKRYFLGCANCLTRTGYPGKR.W YAL012W 2 9 6.1% 394 42542 6.5 U CYS3 SGDID:S000000010, Chr I from 130802-131986, Verified ORF, "Cystathionine gamma-lyase, catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine;" * Jamie_phos_03_itms_12.11385.11385.2 4.0412 0.3952 100.0 1775.9722 1775.9476 8266.4 1 7.012 63.3 8 R.ISVGIEDTDDLLEDIK.Q * Jamie_phos_01_itms_35.21318.21318.3 3.5282 0.0973 94.2 2633.3643 2630.9092 5952.6 57 4.147 26.1 1 R.ISVGIEDTDDLLEDIKQALKQATN.- YML070W 1 1 6.0% 584 62207 5.4 U DAK1 SGDID:S000004535, Chr XIII from 133475-135229, Verified ORF, "Dihydroxyacetone kinase, required for detoxification of dihydroxyacetone (DHA); involved in stress adaptation" * Jamie_phos_01_itms_49.29820.29820.4 3.8661 0.2536 90.3 3896.4565 3891.4197 10417.3 318 4.924 18.6 1 Q.ILNAIRLVNENASGVLLIVKNYTGDVLHFGLS*AER.A Reverse_YBR297W 1 1 6.0% 468 54194 7.5 U MAL33 SGDID:S000000501, Chr II from 800517-801923, Verified ORF, "MAL-activator protein, part of complex locus MAL3; nonfunctional in genomic reference strain S288C" * Jamie_phos_02_itms_9.07614.07614.4 3.2505 0.1332 95.3 3245.7366 3244.2954 8670.8 25 3.381 23.5 1 K.LSDET*CSGS*TSETALADFFCKGPVTFVR.I YLR457C 1 1 6.0% 319 37354 10.2 U NBP1 SGDID:S000004449, Chr XII from 1056768-1055809, reverse complement, Verified ORF, "Component of the mitotic apparatus containing a coiled-coil domain, essential for the G2/M transition" * Jamie_phos_01_itms_11.06987.06987.3 2.8351 0.1572 95.7 2381.1543 2381.562 4246.6 134 4.187 31.9 1 R.ENDEIKPLKIDLS*PS*PIRR.T Reverse_YLR004C 1 1 5.9% 523 58531 8.3 U YLR004C SGDID:S000003994, Chr XII from 159504-157933, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_03_itms_23.18187.18187.4 2.617 0.1364 90.4 3415.4966 3417.4739 8629.5 17 3.466 21.1 1 R.LAVDADDVNIS*STSVSCSDANAAKKEVDMS*R.Q YMR100W 1 1 5.8% 620 72251 6.9 U MUB1 SGDID:S000004706, Chr XIII from 466299-468161, Verified ORF, "Protein of unknown function, deletion causes multi-budding phenotype; has similarity to Aspergillus nidulans samB gene" * Jamie_phos_03_itms_36.25473.25473.4 3.1408 0.1232 93.7 4351.5767 4345.958 11188.0 84 3.899 17.6 1 R.GTEQIRKKVVMSGVLS*VLVTVLDNYLLYHKNY*DFIK.D YLL024C 1 1 5.8% 639 69470 5.1 U SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall" * Jamie_phos_01_itms_29.17997.17997.4 5.9606 0.1067 100.0 4228.3765 4225.668 10083.9 1 5.667 23.1 1 K.KAEETIAWLDSNTTATKEEFDDQLKELQEVANPIMSK.L Reverse_YJR065C 1 1 5.8% 449 49542 5.8 U ARP3 SGDID:S000003826, Chr X from 559072-557723, reverse complement, Verified ORF, "Essential component of the Arp2/3 complex, which is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity" * Jamie_phos_03_itms_25.18838.18838.3 2.8597 0.228 98.4 2960.5745 2958.172 11146.7 98 4.721 24.0 1 R.QKRHS*IVS*VDVGTSKTGSLLESQAIR.N Reverse_YPR005C 1 1 5.8% 294 32994 8.8 U HAL1 SGDID:S000006209, Chr XVI from 566668-565784, reverse complement, Verified ORF, "Cytoplasmic protein involved in halotolerance; decreases intracellular Na+ (via Ena1p) and increases intracellular K+ by decreasing efflux; expression repressed by Ssn6p-Tup1p and Sko1p and induced by NaCl, KCl, and sorbitol through Gcn4p" * Jamie_phos_03_itms_28.21109.21109.2 1.6433 0.1452 92.2 1918.5122 1916.2255 10194.6 2 3.838 40.6 1 R.EIPS*LGSKPIPTKVIQK.H Reverse_YIL031W 2 2 5.7% 1034 116882 6.8 U ULP2 SGDID:S000001293, Chr IX from 292632-295736, Verified ORF, "Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins, plays a role in chromosome cohesion at centromeric regions and recovery from checkpoint arrest induced by DNA damage or DNA replication defects; potential Cdc28p substrate" * Jamie_phos_02_itms_11.09018.09018.3 2.8828 0.1365 93.1 3003.2344 3003.2886 9612.7 169 4.047 22.9 1 K.S*PY*IRKPKPSPMMIDHTSSLAQDNK.I * Jamie_phos_03_itms_30.22198.22198.4 2.9248 0.1479 94.6 3875.0964 3877.2847 11002.7 26 3.632 20.7 1 R.KPPLSAS*S*RPSSARSSNLTDLPKLSNFKRKRASM.- YLR276C 2 3 5.7% 594 68060 9.2 U DBP9 SGDID:S000004266, Chr XII from 696832-695048, reverse complement, Verified ORF, "ATP-dependent RNA helicase of the DEAD-box family involved in biogenesis of the 60S ribosomal subunit" * Jamie_phos_03_itms_10.10366.10366.3 3.7936 0.0622 91.9 4056.2644 4056.2068 7491.1 2 4.756 20.5 2 K.NVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK.S * Jamie_phos_04_itms_8.11538.11538.4 3.3367 0.2328 100.0 4057.4565 4056.2068 4975.6 28 4.438 19.7 1 K.NVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEK.S Reverse_YGL003C 1 1 5.7% 566 62822 8.6 U CDH1 SGDID:S000002971, Chr VII from 494178-492478, reverse complement, Verified ORF, "Cell-cycle regulated activator of the anaphase-promoting complex/cyclosome (APC/C), which directs ubiquitination of mitotic cyclins resulting in exit from mitosis; targets the APC/C to specific substrates including CDC20, ASE1 and CIN8" * Jamie_phos_01_itms_53.32060.32060.4 3.0186 0.1094 91.1 3621.8564 3625.893 8528.7 173 3.158 18.8 1 R.RPTVPTSHPSFEELGAAEPPPTSVRELEY*GHR.T Reverse_YDL038C 1 1 5.7% 583 58523 4.4 U YDL038C SGDID:S000002196, Chr IV from 384078-382327, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_20.20858.20858.4 2.9869 0.1281 93.0 3445.0166 3443.5742 8666.4 5 3.646 19.8 1 K.IISTASSRSSSASDVPTLT*VISSSSTAS*IGQQR.S YPR041W 1 1 5.7% 405 45261 5.1 U TIF5 SGDID:S000006245, Chr XVI from 648701-649918, Verified ORF, "Translation initiation factor eIF-5; N-terminal domain functions as a GTPase-activating protein to mediate hydrolysis of ribosome-bound GTP; C-terminal domain is the core of ribosomal preinitiation complex formation" * Jamie_phos_01_itms_24.15005.15005.3 3.4024 0.1901 98.7 2766.5044 2763.7554 7614.1 2 3.861 27.3 1 R.RAAKPFITWLETAES*DDDEEDDE.- YER068W 1 1 5.6% 587 65354 8.1 U MOT2 SGDID:S000000870, Chr V from 293048-294811, Verified ORF, "Component of the CCR4-NOT transcription regulatory complex, which represses transcription, at least in part, by inhibiting functional TBP-DNA interactions and also aids in transcription elongation; interacts with C-terminal region of Not1p" * Jamie_phos_02_itms_8.06900.06900.3 3.5046 0.2834 100.0 3428.5745 3429.6135 10376.1 1 5.468 23.4 1 R.SGIHNNISTSTAGSNTNLLSENFTGTPS*PAAMR.A YHR019C 2 11 5.6% 554 62207 5.8 U DED81 SGDID:S000001061, Chr VIII from 143551-141887, reverse complement, Verified ORF, "Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA" * Jamie_phos_01_itms_23.14288.14288.4 5.6167 0.4712 100.0 3579.2166 3579.7717 6246.9 1 7.139 26.1 6 K.DAITWLNEHDIKNEEGEDFKFGDDIAEAAER.K * Jamie_phos_03_itms_12.11031.11031.3 4.8653 0.3575 100.0 3580.7644 3579.7717 11160.1 1 7.375 26.7 5 K.DAITWLNEHDIKNEEGEDFKFGDDIAEAAER.K Reverse_YOL094C 1 1 5.6% 323 36149 9.1 U RFC4 SGDID:S000005454, Chr XV from 142554-141583, reverse complement, Verified ORF, "Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon" * Jamie_phos_01_itms_24.14750.14750.3 2.7357 0.1081 90.5 2159.0044 2156.3574 5359.3 460 3.438 29.4 1 R.DITEKNGVIDSLVQPRY*K.E Reverse_YNR034W 1 1 5.6% 321 35653 7.6 U SOL1 SGDID:S000005317, Chr XIV from 690323-691288, Verified ORF, "Protein with a possible role in tRNA export; shows similarity to 6-phosphogluconolactonase non-catalytic domains but does not exhibit this enzymatic activity; homologous to Sol2p, Sol3p, and Sol4p" * Jamie_phos_03_itms_40.28395.28395.2 1.7834 0.1442 94.8 2002.9722 2001.9042 8210.9 4 3.313 38.2 1 K.SET*NGNGNLSTGSMQTS*R.S YBL057C 1 7 5.6% 214 23128 5.4 U PTH2 SGDID:S000000153, Chr II from 113447-112803, reverse complement, Verified ORF, "One of two (see also PTH1) mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for cell growth" * Jamie_phos_02_itms_6.05715.05715.2 3.1929 0.1909 100.0 1431.1322 1431.6042 7139.6 3 4.905 59.1 7 K.SSAT*LLRSKEMK.E Reverse_YLR424W 1 1 5.5% 708 83049 5.3 U YLR424W SGDID:S000004416, Chr XII from 973391-975517, Uncharacterized ORF, "Essential protein present in native splicing complexes; identified as a suppressor of prp38-1, a spliceosomal maturation mutation; cold sensitive alleles accumulate pre-mRNA" * Jamie_phos_01_itms_40.24449.24449.4 3.5931 0.126 96.0 4091.3765 4090.5493 7078.5 2 2.918 19.7 1 R.SQTEIPTT*IGSGDKGLGKGAVYGMSS*LLKAGIGYTKTLK.S YER021W 2 8 5.5% 523 60393 5.6 U RPN3 SGDID:S000000823, Chr V from 196947-198518, Verified ORF, "Essential, non-ATPase regulatory subunit of the 26S proteasome lid, similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control" * Jamie_phos_02_itms_18.12780.12780.3 6.6644 0.4218 100.0 3469.0745 3468.6685 10038.4 1 8.443 38.4 6 K.INHEDGFIETTELLNIYDSEDPQQVFDER.I * Jamie_phos_03_itms_16.13455.13455.2 2.4092 0.2911 100.0 2312.412 2312.4517 10433.8 2 5.241 38.9 2 T.TELLNIYDSEDPQQVFDER.I YGR059W 1 1 5.5% 512 59845 7.4 U SPR3 SGDID:S000003291, Chr VII from 607567-609105, Verified ORF, "Sporulation-specific homolog of the yeast CDC3/10/11/12 family of bud neck microfilament genes; septin protein involved in sporulation; regulated by ABFI" * Jamie_phos_01_itms_16.09921.09921.4 3.2767 0.0869 90.8 3293.0566 3288.577 7591.6 386 3.044 22.2 1 -.MKS*KGSRLST*DCPVEFPKIVSGFAEEVK.I Reverse_YNL240C 1 1 5.5% 491 54151 7.6 U NAR1 SGDID:S000005184, Chr XIV from 199978-198503, reverse complement, Verified ORF, "Nuclear architecture related protein; component of the cytosolic iron-sulfur (FeS) protein assembly machinery, required for maturation of cytosolic and nuclear FeS proteins; homologous to human Narf" * Jamie_phos_01_itms_23.14316.14316.4 3.5739 0.1031 94.9 3253.9365 3257.5977 6321.3 180 3.519 20.5 1 R.KRLAT*INRKRESGSGS*TLKRVLNQINR.F YLR063W 1 1 5.5% 365 42041 7.9 U YLR063W SGDID:S000004053, Chr XII from 264158-265255, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_51.31187.31187.2 2.5268 0.3813 100.0 2324.3323 2321.5059 11438.0 5 5.592 36.8 1 E.LVALASIFTLS*RDFS*SKFAS.A Reverse_YDR354W 1 1 5.5% 380 41374 6.7 U TRP4 SGDID:S000002762, Chr IV from 1184738-1185880, Verified ORF, "Anthranilate phosphoribosyl transferase of the tryptophan biosynthetic pathway, catalyzes the phosphoribosylation of anthranilate, subject to the general control system of amino acid biosynthesis" * Jamie_phos_01_itms_38.23112.23112.2 1.7295 0.1416 93.1 2261.1921 2263.2747 8672.7 343 3.576 27.5 1 K.FMDCGLTGILDGAGS*NSTS*AK.G YGL017W 1 1 5.4% 503 57931 6.3 U ATE1 SGDID:S000002985, Chr VII from 459859-461370, Verified ORF, "Arginyl-tRNA-protein transferase, catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway" * Jamie_phos_03_itms_28.21003.21003.4 3.1836 0.0955 90.9 3040.5366 3046.4038 6912.2 23 3.583 24.4 1 K.VTKELYLVDSETGRGEGFPTDNVVKYK.N YNL071W 1 1 5.4% 482 51818 7.8 U LAT1 SGDID:S000005015, Chr XIV from 491524-492972, Verified ORF, "Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes the oxidative decarboxylation of pyruvate to acetyl-CoA" * Jamie_phos_05_itms_22.22009.22009.3 2.8619 0.1197 90.8 3053.1243 3053.5295 10606.8 190 3.482 22.0 1 K.LLKLRQSLNAT*ANDKYKLSINDLLVK.A YNL178W 1 2 5.4% 240 26503 9.4 U RPS3 SGDID:S000005122, Chr XIV from 302682-303404, Verified ORF, "Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins" * Jamie_phos_02_itms_5.04852.04852.2 2.1958 0.1344 96.4 1440.0521 1438.5339 7840.1 1 4.714 62.5 2 R.ELAEEGYSGVEVR.V YPL043W 1 1 5.3% 685 77825 9.1 U NOP4 SGDID:S000005964, Chr XVI from 469936-471993, Verified ORF, "Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs)" * Jamie_phos_01_itms_70.42419.42419.4 3.7641 0.1264 97.2 4058.5764 4061.59 8016.9 170 3.344 17.6 1 R.GFGFVS*FAVEDDTKEALAKARKTKFNGHILRVDIAK.R YJR064W 1 1 5.3% 562 61914 5.5 U CCT5 SGDID:S000003825, Chr X from 555828-557516, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo" * Jamie_phos_01_itms_54.32781.32781.3 4.0836 0.2282 100.0 3101.4844 3100.4473 9428.2 4 5.151 22.4 1 K.SQDDEIGDGTTGVVVLASALLDQALELIQK.G YFR028C 6 18 5.3% 551 61907 8.0 U CDC14 SGDID:S000001924, Chr VI from 210056-208401, reverse complement, Verified ORF, "Protein phosphatase required for mitotic exit; located in the nucleolus until liberated by the FEAR and Mitotic Exit Network in anaphase, enabling it to act on key substrates to effect a decrease in CDK/B-cyclin activity and mitotic exit" * Jamie_phos_03_itms_4.04600.04600.3 4.7572 0.5037 100.0 2989.3743 2991.04 4657.1 1 7.336 30.0 2 R.KVVIES*NNSDDESMQDTNGTSNHYPK.V * Jamie_phos_04_itms_3.04918.04918.3 5.2942 0.3308 100.0 2990.9343 2991.04 5958.8 1 5.73 37.0 8 R.KVVIESNNS*DDESMQDTNGTSNHYPK.V * Jamie_phos_02_itms_4.04436.04436.3 3.1681 0.1613 96.4 3334.0444 3333.4382 4299.3 2 3.578 25.9 1 R.KVVIES*NNSDDESMQDTNGTSNHYPKVSR.K * Jamie_phos_02_itms_4.04514.04514.3 4.1932 0.2947 100.0 2862.1743 2862.866 6858.5 11 5.127 29.2 5 K.VVIESNNS*DDESMQDTNGTSNHYPK.V * Jamie_phos_01_itms_7.04468.04468.3 3.6902 0.2525 100.0 3205.0144 3205.2642 6136.5 13 4.61 25.0 1 K.VVIESNNSDDES*MQDTNGTSNHYPKVSR.K * Jamie_phos_02_itms_4.04499.04499.3 3.3948 0.16 97.8 3205.5842 3205.2642 5486.1 20 4.135 22.2 1 K.VVIESNNS*DDESMQDTNGTSNHYPKVSR.K Reverse_YPL181W 1 1 5.3% 506 57053 4.9 U CTI6 SGDID:S000006102, Chr XVI from 203420-204940, Verified ORF, "Protein that relieves transcriptional repression by binding to the Cyc8p-Tup1p corepressor and recruiting the SAGA complex to the repressed promoter; contains a PHD finger domain" * Jamie_phos_01_itms_28.16918.16918.3 3.1351 0.2112 98.5 3263.6042 3260.3008 6973.4 56 4.079 22.1 1 K.RDLLKKDSDGPDLSYQDT*SADDMS*NRR.R Reverse_YGL129C 1 1 5.3% 488 55562 9.8 U RSM23 SGDID:S000003097, Chr VII from 269194-267728, reverse complement, Verified ORF, "Mitochondrial ribosomal protein of the small subunit, has similarity to mammalian apoptosis mediator proteins; null mutation prevents induction of apoptosis by overproduction of metacaspase Mca1p" * Jamie_phos_03_itms_14.12682.12682.3 2.6894 0.1374 91.4 2859.3245 2863.1106 8532.2 132 3.665 24.0 1 K.S*DVAYAHAQSLLVTKGVGPEGT*IIFK.K YDR432W 1 1 5.3% 414 45407 5.5 U NPL3 SGDID:S000002840, Chr IV from 1328773-1330017, Verified ORF, "RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; phosphorylation by Sky1p in the cytoplasm may promote release of mRNAs" * Jamie_phos_01_itms_36.21728.21728.2 4.1586 0.4649 100.0 2438.7722 2438.6501 6027.2 1 8.174 54.8 1 R.DFDGTGALEFPSEEILVEALER.L YCR012W 2 2 5.3% 416 44738 7.6 U PGK1 SGDID:S000000605, Chr III from 137743-138993, Verified ORF, "3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis" * Jamie_phos_02_itms_8.06955.06955.2 1.9971 0.2401 100.0 1579.6322 1580.7319 7250.6 1 5.204 50.0 1 K.VLENTEIGDSIFDK.A * Jamie_phos_02_itms_10.08452.08452.3 3.0776 0.1119 92.9 2346.5044 2346.6396 5644.4 11 3.557 28.6 1 K.VLENTEIGDSIFDKAGAEIVPK.L Reverse_YKL093W 1 1 5.3% 339 36935 6.4 U MBR1 SGDID:S000001576, Chr XI from 264433-265452, Verified ORF, "Protein involved in mitochondrial functions and stress response; overexpression suppresses growth defects of hap2, hap3, and hap4 mutants" * Jamie_phos_04_itms_15.15702.15702.2 2.0523 0.1816 98.2 1956.4321 1957.1194 10390.7 48 4.508 32.4 1 R.MTTNNSSSSTFYSTTKAK.R YER036C 2 2 5.2% 610 68377 6.5 U YER036C SGDID:S000000838, Chr V from 225198-223366, reverse complement, Uncharacterized ORF, "ATPase of the ATP-binding cassette (ABC) family involved in ribosome biogenesis, has similarity to Gcn20p" * Jamie_phos_01_itms_24.14859.14859.2 3.1437 0.3091 100.0 2103.8323 2104.3184 6814.0 4 6.507 44.1 1 K.TILEDGPESELLEPLYER.M * Jamie_phos_01_itms_18.11127.11127.2 2.0642 0.1278 95.7 1834.4922 1834.9854 9613.4 2 4.088 53.8 1 R.DKYSNISQDFQFWR.G YBL039C 1 1 5.2% 579 64710 6.0 U URA7 SGDID:S000000135, Chr II from 145731-143992, reverse complement, Verified ORF, "Major CTP synthase isozyme (see also URA8), catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to UTP, forming CTP, the final step in de novo biosynthesis of pyrimidines; involved in phospholipid biosynthesis" * Jamie_phos_01_itms_17.10419.10419.4 3.4846 0.0998 93.9 3482.7366 3483.076 7727.3 30 3.438 21.8 1 K.IALVGKYTNLKDSYLSVIKALEHSSMKCRR.K YLR004C 1 1 5.2% 523 58531 8.3 U YLR004C SGDID:S000003994, Chr XII from 159504-157933, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_8.04980.04980.4 3.3559 0.1524 97.0 2829.5366 2828.0283 7173.8 38 3.745 24.4 1 K.AANADSCSVSTSSINVDDADVALRFLK.Q YGL234W 2 2 5.1% 802 86068 5.3 U ADE5,7 SGDID:S000003203, Chr VII from 56482-58890, Verified ORF, "Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities" * Jamie_phos_01_itms_27.16782.16782.3 3.0824 0.1077 91.9 2420.1243 2420.6794 7190.9 2 3.659 28.3 1 K.ADGIAAGKGVIIPSS*IDESVQAIK.D * Jamie_phos_03_itms_34.24676.24676.2 1.9124 0.1654 96.9 2168.2322 2165.235 10572.7 233 3.789 31.2 1 K.DS*KT*NQLVPEVLEYNVR.F YCL057W 1 1 5.1% 712 81934 5.8 U PRD1 SGDID:S000000562, Chr III from 24768-26906, Verified ORF, "Zinc metalloendopeptidase, found in the cytoplasm and intermembrane space of mitochondria; with Cym1p, involved in degradation of mitochondrial proteins and of presequence peptides cleaved from imported proteins" * Jamie_phos_01_itms_35.21462.21462.4 4.0207 0.1517 98.5 4122.6167 4119.3447 8744.1 142 3.309 17.1 1 R.DGKYGHAANFGLSSSFMIDDT*TRSYPVT*ALVCNFSK.S YGL026C 1 1 5.1% 707 76626 6.5 U TRP5 SGDID:S000002994, Chr VII from 448540-446417, reverse complement, Verified ORF, "Tryptophan synthase involved in tryptophan biosynthesis, regulated by the general control system of amino acid biosynthesis" * Jamie_phos_03_itms_35.25041.25041.4 2.6451 0.169 94.3 3948.8564 3951.2188 8892.8 250 3.519 17.1 1 R.EHFQS*VGS*VADGVVIGSKIVTLCGDAPEGKRYDVAK.E Reverse_YAL047C 1 1 5.1% 622 72105 5.1 U SPC72 SGDID:S000000045, Chr I from 56858-54990, reverse complement, Verified ORF, "Component of the cytoplasmic Tub4p (gamma-tubulin) complex, binds spindle pole bodies and links them to microtubules; has roles in astral microtubule formation and stabilization" * Jamie_phos_05_itms_26.24109.24109.4 2.6745 0.2334 98.1 3610.2966 3613.658 8990.0 6 3.335 22.0 1 K.SSPSDRS*ELQSGAPSS*QALSLFEEKDQKSEAR.S YNL094W 1 1 5.1% 587 66134 6.2 U APP1 SGDID:S000005038, Chr XIV from 447613-449376, Uncharacterized ORF, "Protein of unknown function, interacts with Rvs161p and Rvs167p; computational analysis of protein-protein interactions in large-scale studies suggests a possible role in actin filament organization" * Jamie_phos_03_itms_29.21291.21291.4 2.6317 0.1364 90.6 3639.0566 3634.9634 9444.5 5 4.062 22.4 1 R.T*RRRPPPPPIPSTQKPSLTEEQTES*IRMSR.R YDR235W 1 1 5.1% 544 65145 8.0 U PRP42 SGDID:S000002643, Chr IV from 933498-935132, Verified ORF, "U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats" * Jamie_phos_01_itms_61.36808.36808.3 2.9923 0.1691 96.2 3359.4844 3355.8774 8342.4 10 3.715 24.1 1 K.YS*KWLINS*KNDLLGAKNVLLMGLKFSLK.K YCR066W 1 1 5.1% 487 55230 7.6 U RAD18 SGDID:S000000662, Chr III from 231495-232958, Verified ORF, "Protein involved in postreplication repair; binds single-stranded DNA and has single-stranded DNA dependent ATPase activity; forms heterodimer with Rad6p; contains RING-finger motif" * Jamie_phos_01_itms_9.05855.05855.4 2.9252 0.1162 90.9 2954.8564 2955.2603 6856.4 80 3.886 23.6 1 K.KPKISTTFPTESNPHNKS*SSRFKVR.T YMR187C 1 1 5.1% 431 50288 8.9 U YMR187C SGDID:S000004799, Chr XIII from 635983-634688, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_10.06242.06242.3 2.6685 0.1757 95.6 2499.2043 2500.002 6921.0 136 4.29 28.6 1 K.WVYLSIVKTAGNKYYKGIGLPK.I YML125C 1 1 5.1% 312 35287 5.5 U YML125C SGDID:S000004594, Chr XIII from 21700-20762, reverse complement, Uncharacterized ORF, "Essential protein required for maturation of Gas1p and Pho8p; GFP-fusion protein localizes to the endoplasmic reticulum; null mutants have a cell separation defect" * Jamie_phos_04_itms_28.23686.23686.2 1.6623 0.1355 91.7 1914.4321 1916.0923 9662.1 2 3.62 40.0 1 K.VS*LLYANETENDILLK.D Reverse_YNL144C 1 1 5.0% 740 84202 6.5 U YNL144C SGDID:S000005088, Chr XIV from 355044-352822, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_36.21930.21930.4 4.4832 0.2362 96.0 3888.5366 3889.9102 9073.2 88 4.323 19.9 1 D.TQSSEGALSGS*DNPGNSDHSADS*VSPPLLSLSRSRSK.N YDR014W 1 1 4.9% 647 74722 5.9 U RAD61 SGDID:S000002421, Chr IV from 474043-475986, Verified ORF, "Protein of unknown function; mutation confers radiation sensitivity" * Jamie_phos_02_itms_30.20150.20150.4 3.0656 0.1008 90.7 3721.7366 3716.0864 9836.8 59 3.537 21.5 1 K.IITSSDT*S*MAFMKDEKLSAFNFLDGSKASKRK.R Reverse_YLR103C 1 1 4.9% 650 74249 4.8 U CDC45 SGDID:S000004093, Chr XII from 345942-343990, reverse complement, Verified ORF, "DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes" * Jamie_phos_01_itms_23.14060.14060.4 3.3381 0.0775 90.1 3815.5764 3810.7625 7378.1 306 2.738 18.3 1 R.KRLNTLKQAS*NDEEEEGDTDDNNDNNIKVS*DK.D YLR058C 1 1 4.9% 469 52219 7.4 U SHM2 SGDID:S000004048, Chr XII from 259402-257993, reverse complement, Verified ORF, "Cytosolic serine hydroxymethyltransferase, involved in one-carbon metabolism" * Jamie_phos_01_itms_20.12543.12543.3 2.5396 0.1483 91.9 2637.7744 2638.9316 10107.2 102 3.899 26.1 1 K.LITSHLVDTDPEVDSIIKDEIER.Q Reverse_YPL053C 1 1 4.9% 446 52128 5.5 U KTR6 SGDID:S000005974, Chr XVI from 458455-457115, reverse complement, Verified ORF, "Probable mannosylphosphate transferase involved in the synthesis of core oligosaccharides in protein glycosylation pathway; member of the KRE2/MNT1 mannosyltransferase family" * Jamie_phos_01_itms_26.15916.15916.4 3.3287 0.1024 93.8 2707.4165 2712.004 8842.4 249 3.256 27.8 1 K.AIPQLS*KPLYPTVYQES*MQKTK.P YDL014W 1 1 4.9% 327 34465 10.2 U NOP1 SGDID:S000002172, Chr IV from 427361-428344, Verified ORF, "Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin" * Jamie_phos_03_itms_6.07256.07256.2 1.9074 0.248 100.0 1769.7722 1769.872 6272.5 25 4.356 43.3 1 K.ANCIDSTVDAETVFAR.E Reverse_YGR083C 1 1 4.8% 651 70852 9.4 U GCD2 SGDID:S000003315, Chr VII from 646819-644864, reverse complement, Verified ORF, "Delta subunit of the translation initiation factor eIF2B, the guanine-nucleotide exchange factor for eIF2; activity subsequently regulated by phosphorylated eIF2; first identified as a negative regulator of GCN4 expression" * Jamie_phos_05_itms_22.21586.21586.4 3.0992 0.1059 91.8 3649.2566 3649.226 10610.3 35 3.182 20.0 1 R.GEFLPRSDVVIVKINKKLS*IANHLLLET*LVK.S YCL040W 1 1 4.8% 500 55377 6.2 U GLK1 SGDID:S000000545, Chr III from 50838-52340, Verified ORF, "Glucokinase, catalyzes the phosphorylation of glucose at C6 in the first irreversible step of glucose metabolism; one of three glucose phosphorylating enzymes; expression regulated by non-fermentable carbon sources" * Jamie_phos_01_itms_30.18371.18371.3 2.9304 0.1087 90.7 2699.1543 2696.9275 9554.1 99 3.375 25.0 1 K.SKIPDDLLDDENVTSDDLFGFLAR.R Reverse_YLR378C 1 1 4.8% 480 52937 9.4 U SEC61 SGDID:S000004370, Chr XII from 877177-875735, reverse complement, Verified ORF, "Essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms a channel for SRP-dependent protein import and retrograde transport of misfolded proteins out of the ER; with Sec63 complex allows SRP-independent protein import into ER" * Jamie_phos_01_itms_70.42225.42225.3 2.8235 0.1436 93.7 2781.2043 2779.1003 8105.2 43 3.657 25.0 1 R.Y*ISTERKGNIVMGQDKFQKAIDR.P Reverse_YBR087W 1 1 4.8% 354 39942 8.2 U RFC5 SGDID:S000000291, Chr II from 423759-424823, Verified ORF, "Subunit of heteropentameric Replication factor C (RF-C), which is a DNA binding protein and ATPase that acts as a clamp loader of the proliferating cell nuclear antigen (PCNA) processivity factor for DNA polymerases delta and epsilon" * Jamie_phos_03_itms_17.14189.14189.2 1.9755 0.2176 99.3 2061.2522 2063.3455 9349.4 76 4.099 37.5 1 K.LRY*VGPGFISELLAMCR.T YOR017W 1 1 4.6% 800 93408 9.3 U PET127 SGDID:S000005543, Chr XV from 361411-363813, Verified ORF, "Protein with a role in mitochondrial RNA stability and/or processing, located in the mitochondrial membrane" * Jamie_phos_01_itms_32.19754.19754.4 3.5576 0.1914 99.0 4473.1367 4468.845 8378.6 350 3.854 17.1 1 K.KRNGICSIDS*DRSLDREIVLSVLGHYLEDFLTEKS*LK.N YKL054C 1 1 4.6% 738 83973 5.0 U DEF1 SGDID:S000001537, Chr XI from 338397-336181, reverse complement, Verified ORF, "RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and proteolysis of RNAPII" * Jamie_phos_03_itms_33.24204.24204.4 3.0223 0.1017 90.1 4003.3364 4003.1143 11608.6 310 3.236 18.7 1 K.EQQHSYVPQQHLPNPEDDITYKSSNNSNSFT*STK.H YIL101C 1 1 4.6% 647 72687 9.3 U XBP1 SGDID:S000001363, Chr IX from 177247-175304, reverse complement, Verified ORF, "Transcriptional repressor that binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate" * Jamie_phos_03_itms_25.19417.19417.3 3.2041 0.1998 98.4 3607.1042 3608.6707 12157.2 250 4.042 19.8 1 K.QQNQRPAHNTNT*NMDT*SFSPRANNSLNNFK.F Reverse_YGL023C 1 1 4.6% 635 70617 7.8 U PIB2 SGDID:S000002991, Chr VII from 452109-450202, reverse complement, Verified ORF, "Protein binding phosphatidylinositol 3-phosphate, involved in telomere-proximal repression of gene expression; similar to Fab1 and Vps27" * Jamie_phos_01_itms_19.11760.11760.4 3.2233 0.1584 96.4 3282.5366 3283.487 6864.1 68 4.059 22.6 1 R.SVDVVSNTPDLEPNSRQDDTFPLT*KGIEK.S YKR019C 1 1 4.6% 615 68880 9.8 U IRS4 SGDID:S000001727, Chr XI from 477706-475859, reverse complement, Verified ORF, "Protein involved in regulation of phosphatidylinositol 4,5-bisphosphate concentrations; Irs4p and Tax4p bind and activate the phosphatase Inp51p; mutation confers an increase in rDNA silencing" * Jamie_phos_02_itms_13.10204.10204.4 3.3109 0.0976 92.1 3212.0166 3211.3892 9223.0 44 3.321 22.8 1 K.TTLRKTSVST*NAENDHASSLHEGNLRYK.Y Reverse_YJR032W 1 1 4.6% 393 45134 5.4 U CPR7 SGDID:S000003793, Chr X from 490995-492176, Verified ORF, "Peptidyl-prolyl cis-trans isomerase (cyclophilin), catalyzes the cis-trans isomerization of peptide bonds N-terminal to proline residues; binds to Hsp82p and contributes to chaperone activity" * Jamie_phos_04_itms_15.15546.15546.2 1.9428 0.1351 95.1 1808.1322 1805.8591 9860.3 22 4.327 35.3 1 K.DAYISCGGKGVSSSSSDK.Q Reverse_YIL160C 1 1 4.6% 417 44730 7.6 U POT1 SGDID:S000001422, Chr IX from 41444-40191, reverse complement, Verified ORF, "3-ketoacyl-CoA thiolase with broad chain length specificity, cleaves 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA during beta-oxidation of fatty acids" * Jamie_phos_01_itms_43.25977.25977.2 1.9227 0.1405 95.5 2261.2522 2262.3982 9260.8 47 3.546 30.6 1 R.DKIFAPRISS*LSEAT*VNPR.P YDR318W 1 1 4.6% 368 42971 5.0 U MCM21 SGDID:S000002726, Chr IV from 1103753-1103804,1103888-1104942, Verified ORF, "Protein involved in minichromosome maintenance; component of the COMA complex that bridges kinetochore subunits that are in contact with centromeric DNA and the subunits bound to microtubules" * Jamie_phos_05_itms_34.28730.28730.2 1.6593 0.1326 91.3 1896.2922 1896.1967 8473.3 295 3.552 34.4 1 R.AQADIPATPIPYEPKKR.A YGR097W 2 2 4.5% 1146 126864 9.3 U ASK10 SGDID:S000003329, Chr VII from 678699-682139, Verified ORF, "Component of the RNA polymerase II holoenzyme, phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p, which relieves repression of stress-response genes" * Jamie_phos_02_itms_6.05775.05775.2 2.7968 0.1666 99.5 2202.0923 2202.2097 7773.6 1 5.004 42.5 1 K.SSAYSS*SVSIADTYANANNAK.A * Jamie_phos_02_itms_9.07856.07856.3 3.2349 0.1114 93.5 3289.8843 3290.4448 7489.4 11 3.683 23.3 1 R.NSVNIGSHTPCLTDST*FTLQDGTTTSVNLK.G Reverse_YNL197C 1 1 4.5% 661 71253 8.4 U WHI3 SGDID:S000005141, Chr XIV from 269594-267609, reverse complement, Verified ORF, "RNA binding protein that binds to and sequesters the G1 cyclin CLN3 mRNA; regulates cell fate and dose-dependently inhibits passage through Start by regulating the critical cell size requirement necessary for cell cycle progression" * Jamie_phos_04_itms_27.23192.23192.4 3.1013 0.1695 96.5 3358.3765 3357.6711 9497.3 111 3.772 20.1 1 R.SNPGRVGLPNKSFSLRIGGKS*SVT*SRPLQR.G YDR023W 1 1 4.5% 462 53310 6.1 U SES1 SGDID:S000002430, Chr IV from 489504-490892, Verified ORF, "Cytosolic seryl-tRNA synthetase, class II aminoacyl-tRNA synthetase that aminoacylates tRNA(Ser), displays tRNA-dependent amino acid recognition which enhances discrimination of the serine substrate, interacts with peroxin Pex21p" * Jamie_phos_01_itms_25.15710.15710.3 2.4822 0.2028 95.9 2459.7544 2459.6228 7222.4 1 4.235 28.8 1 K.TAQLSEFDEELYKVIDGEDEK.Y Reverse_YLL008W 1 1 4.4% 752 84843 5.7 U DRS1 SGDID:S000003931, Chr XII from 131728-133986, Verified ORF, "Nucleolar DEAD-box protein required for ribosome assembly and function, including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles" * Jamie_phos_02_itms_29.19561.19561.4 3.2416 0.1095 93.2 3866.3364 3869.5994 10001.4 108 3.629 19.3 1 R.VFEQT*LKTAAKKPPDIMIRVPKKLSLSVLS*KIK.S Reverse_YOR027W 1 1 4.4% 589 66265 5.6 U STI1 SGDID:S000005553, Chr XV from 381052-382821, Verified ORF, "Hsp90 cochaperone, interacts with the Ssa group of the cytosolic Hsp70 chaperones; activates the ATPase activity of Ssa1p; homolog of mammalian Hop protein" * Jamie_phos_03_itms_33.23688.23688.3 2.631 0.2742 99.4 2834.2444 2837.9683 8722.9 73 4.464 22.0 1 K.SEEKQPAKSSNEKSTTSDSQPEADKK.Q Reverse_YDL183C 1 1 4.4% 320 37047 9.6 U YDL183C SGDID:S000002342, Chr IV from 131834-130872, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_22.19658.19658.2 1.5022 0.1592 92.7 1787.1921 1788.9957 11861.5 283 3.795 38.5 1 K.VTYDKLTLRIEQT*K.D Reverse_YJL185C 1 1 4.4% 293 33740 5.1 U YJL185C SGDID:S000003721, Chr X from 82974-82093, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_66.39854.39854.2 1.7342 0.1638 95.7 1416.0922 1416.4875 2683.3 346 3.56 45.8 1 R.LAPAPQES*PPSNK.N YKR098C 1 1 4.3% 717 82703 8.4 U UBP11 SGDID:S000001806, Chr XI from 634817-632664, reverse complement, Verified ORF, "Ubiquitin-specific protease that cleaves ubiquitin from ubiquitinated proteins" * Jamie_phos_02_itms_35.23451.23451.4 2.8908 0.138 93.6 3809.0166 3806.755 10669.1 73 3.432 20.0 1 K.LEDCINLFT*GDEELSGDNAWDCPNCRIT*DSK.S Reverse_YJL105W 1 1 4.3% 560 63856 8.7 U SET4 SGDID:S000003641, Chr X from 224972-226654, Verified ORF, "Protein of unknown function, contains a SET domain" * Jamie_phos_01_itms_7.04565.04565.4 3.5727 0.2044 99.6 2991.1765 2994.2468 5288.5 283 4.251 25.4 1 K.SANIIEWIPNRLDWQWEVS*IEEGK.R Reverse_YCR053W 1 1 4.3% 514 57474 5.6 U THR4 SGDID:S000000649, Chr III from 216692-218236, Verified ORF, "Threonine synthase, conserved protein that catalyzes formation of threonine from 0-phosphohomoserine; expression is regulated by the GCN4-mediated general amino acid control pathway" * Jamie_phos_01_itms_23.14002.14002.3 2.8189 0.1312 92.7 2707.2844 2709.2424 7094.7 10 3.788 28.6 1 R.EIFKLKKKLTS*LKKLEEPLVDK.E YDR190C 1 1 4.3% 463 50453 5.9 U RVB1 SGDID:S000002598, Chr IV from 841990-840599, reverse complement, Verified ORF, "Essential protein involved in transcription regulation; component of chromatin remodeling complexes; required for assembly and function of the INO80 complex; member of the RUVB-like protein family" * Jamie_phos_03_itms_12.11194.11194.2 2.901 0.3145 100.0 2318.652 2318.4956 8419.7 16 5.519 34.2 1 R.SDAYATEFDLETEEYVPLPK.G YGL148W 2 3 4.3% 376 40838 7.8 U ARO2 SGDID:S000003116, Chr VII from 226404-227534, Verified ORF, "Bifunctional chorismate synthase and flavin reductase, catalyzes the conversion of 5-enolpyruvylshikimate 3-phosphate (EPSP) to form chorismate, which is a precursor to aromatic amino acids" * Jamie_phos_01_itms_7.04327.04327.3 3.3483 0.2195 100.0 1836.7743 1838.9689 6852.6 5 4.479 41.7 1 R.DEKDRVEIQSGTEFGK.T * Jamie_phos_02_itms_4.04562.04562.2 3.801 0.4092 100.0 1838.3922 1838.9689 8781.2 1 8.268 70.0 2 R.DEKDRVEIQSGTEFGK.T YAL041W 1 1 4.2% 854 96939 8.5 U CDC24 SGDID:S000000039, Chr I from 62841-65405, Verified ORF, "Guanine nucleotide exchange factor (GEF or GDP-release factor) for Cdc42p; required for polarity establishment and maintenance, and mutants have morphological defects in bud formation and shmooing" * Jamie_phos_01_itms_49.29976.29976.4 2.8782 0.1527 94.7 4034.1365 4038.4263 8248.2 140 3.635 17.6 1 K.SSSMMSPTTTMNTPNHHNSRQTHDSMASFSSSHMKR.V YJR002W 1 3 4.2% 593 66953 4.7 U MPP10 SGDID:S000003762, Chr X from 438779-440560, Verified ORF, "Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p" * Jamie_phos_02_itms_11.09106.09106.3 4.8396 0.4422 100.0 2906.6943 2906.04 10826.9 1 7.266 31.2 3 K.SLAEIYEDDYTRAEDESALSEELQK.A Reverse_YKL127W 1 1 4.2% 570 63112 7.2 U PGM1 SGDID:S000001610, Chr XI from 203185-204897, Verified ORF, "Phosphoglucomutase, minor isoform; catalyzes the conversion from glucose-1-phosphate to glucose-6-phosphate, which is a key step in hexose metabolism" * Jamie_phos_04_itms_34.27134.27134.3 2.5974 0.2567 98.6 2637.7744 2634.9492 8852.8 19 4.375 27.2 1 K.EEYTRIIHSAAPT*SLLGGQGIVLK.R YNL004W 1 1 4.2% 429 49142 6.6 U HRB1 SGDID:S000004949, Chr XIV from 623334-624623, Verified ORF, "Poly(A+) RNA-binding protein, involved in the export of mRNAs from the nucleus to the cytoplasm; similar to Gbp2p and Npl3p" * Jamie_phos_02_itms_33.22250.22250.2 1.7846 0.1114 90.2 2094.9722 2093.998 8072.1 328 3.511 26.5 1 R.HNT*RDDSRRGGFGSS*GAR.G YDR019C 1 1 4.2% 400 44469 8.8 U GCV1 SGDID:S000002426, Chr IV from 485361-484159, reverse complement, Verified ORF, "T subunit of the mitochondrial glycine decarboxylase complex, required for the catabolism of glycine to 5,10-methylene-THF; expression is regulated by levels of levels of 5,10-methylene-THF in the cytoplasm" * Jamie_phos_02_itms_7.06354.06354.2 2.1524 0.2083 99.5 1787.7522 1787.8773 8663.9 44 4.075 37.5 1 R.GGYTGEDGFEISIANEK.A YBR080C 1 1 4.1% 758 84056 8.0 U SEC18 SGDID:S000000284, Chr II from 400884-398608, reverse complement, Verified ORF, "ATPase required for the release of Sec17p during the 'priming' step in homotypic vacuole fusion and for ER to Golgi transport; homolog of the mammalian NSF" * Jamie_phos_01_itms_41.24917.24917.4 3.446 0.106 94.3 3223.3364 3220.564 7606.2 24 3.747 22.8 1 K.NFSGAEIEGLVKS*ASSFAINKTVNIGKGATK.L Reverse_YHR113W 1 1 4.1% 490 54174 7.0 U YHR113W SGDID:S000001155, Chr VIII from 336340-337812, Uncharacterized ORF, "Putative metalloprotease" * Jamie_phos_04_itms_13.14270.14270.2 1.8366 0.193 97.9 2520.4321 2517.63 8210.9 242 4.01 23.7 1 K.DFWSHWIAGGYT*EVGVQLY*K.E YBR143C 1 2 4.1% 437 49006 5.0 U SUP45 SGDID:S000000347, Chr II from 532176-530863, reverse complement, Verified ORF, "Polypeptide release factor involved in translation termination; mutant form acts as a recessive omnipotent suppressor" * Jamie_phos_03_itms_7.08115.08115.2 2.0304 0.1798 98.1 2024.7922 2025.2292 8558.4 2 5.113 38.2 2 K.NGLVLYCGDIITEDGKEK.K Reverse_YLR303W 1 1 4.1% 444 48672 6.4 U MET17 SGDID:S000004294, Chr XII from 732544-733878, Verified ORF, "O-acetyl homoserine-O-acetyl serine sulfhydrylase, required for sulfur amino acid synthesis" * Jamie_phos_03_itms_29.21459.21459.2 1.3178 0.1809 93.0 1849.6721 1849.0104 9589.9 62 3.528 35.3 1 K.GSDVIIGGIT*TGHGGIWK.T YAL061W 1 1 4.1% 417 46099 6.1 U YAL061W SGDID:S000000057, Chr I from 33449-34702, Uncharacterized ORF, "putative polyol dehydrogenase" * Jamie_phos_02_itms_28.19108.19108.2 1.7091 0.1425 93.2 1870.7322 1873.126 9671.5 15 3.765 40.6 1 K.NLKVGDKVVVEPTGTCR.D Reverse_YPL112C 1 1 4.1% 394 44911 9.0 U PEX25 SGDID:S000006033, Chr XVI from 338619-337435, reverse complement, Verified ORF, "Peripheral peroxisomal membrane peroxin required for the regulation of peroxisome size and maintenance, recruits GTPase Rho1p to peroxisomes, induced by oleate, interacts with homologous protein Pex27p" * Jamie_phos_02_itms_22.15613.15613.2 1.7938 0.1372 93.3 2041.9321 2044.1827 8175.5 19 3.523 40.0 1 K.T*Y*YTLVSPDLVTLNRK.S Reverse_YJR080C 1 1 4.1% 394 44428 9.8 U YJR080C SGDID:S000003841, Chr X from 581530-580346, reverse complement, Uncharacterized ORF, "The authentic, non-tagged protein was localized to the mitochondria" * Jamie_phos_03_itms_34.24550.24550.2 1.952 0.1834 97.6 1760.0322 1757.898 9629.1 63 3.824 36.7 1 K.SSNS*VLSRASPFIPSK.I YOR063W 1 1 4.1% 387 43758 10.3 U RPL3 SGDID:S000005589, Chr XV from 444687-445850, Verified ORF, "Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribosomal proteins; involved in the replication and maintenance of killer double stranded RNA virus" * Jamie_phos_02_itms_14.10495.10495.2 2.0067 0.144 95.7 1669.7322 1667.8595 9473.2 152 4.649 36.7 1 K.AHLAEIQLNGGSISEK.V YNL186W 1 1 4.0% 792 88517 5.5 U UBP10 SGDID:S000005130, Chr XIV from 289500-291878, Verified ORF, "Ubiquitin-specific protease that deubiquitinates ubiquitin-protein moieties; may regulate silencing by acting on Sir4p; involved in posttranscriptionally regulating Gap1p and possibly other transporters; primarily located in the nucleus" * Jamie_phos_01_itms_21.12927.12927.4 2.9429 0.1864 97.4 3460.4165 3462.8542 8038.0 58 3.663 21.0 1 K.KT*NTVPKSMAEALLLYTSKNDKDAADATGAKK.S YHR007C 1 2 4.0% 530 60720 8.7 U ERG11 SGDID:S000001049, Chr VIII from 121678-120086, reverse complement, Verified ORF, "Lanosterol 14-alpha-demethylase, catalyzes the C-14 demethylation of lanosterol to form 4,4''-dimethyl cholesta-8,14,24-triene-3-beta-ol in the ergosterol biosynthesis pathway; member of the cytochrome P450 family" * Jamie_phos_05_itms_6.10842.10842.2 1.9548 0.3514 100.0 2168.2122 2169.263 10042.5 14 5.27 32.5 2 K.DSASSYSVGEEVDYGFGAISK.G Reverse_YLR120C 1 1 4.0% 569 60010 4.9 U YPS1 SGDID:S000004110, Chr XII from 388221-386512, reverse complement, Verified ORF, "Aspartic protease, attached to the plasma membrane via a glycosylphosphatidylinositol (GPI) anchor" * Jamie_phos_03_itms_15.12903.12903.3 2.7475 0.1266 90.8 2616.5044 2617.0635 9942.2 171 3.607 26.1 1 -.IFAFLLSILTLPLS*PVIHDGVNR.K YKL035W 1 3 4.0% 499 55988 7.4 U UGP1 SGDID:S000001518, Chr XI from 369534-371033, Verified ORF, "UDP-glucose pyrophosphorylase (UGPase), catalyses the reversible formation of UDP-Glc from glucose 1-phosphate and UTP, involved in a wide variety of metabolic pathways, expression modulated by Pho85p through Pho4p" * Jamie_phos_02_itms_5.04922.04922.2 3.206 0.3779 100.0 2282.372 2283.3477 6098.9 1 6.536 47.4 3 K.THS*TYAFESNTNSVAASQMR.N YIL122W 1 1 4.0% 351 39498 8.9 U POG1 SGDID:S000001384, Chr IX from 130607-131662, Verified ORF, "Putative transcriptional activator that promotes recovery from pheromone induced arrest; inhibits both alpha-factor induced G1 arrest and repression of CLN1 and CLN2 via SCB/MCB promoter elements; potential Cdc28p substrate; SBF regulated" * Jamie_phos_01_itms_48.29490.29490.2 1.9851 0.1177 92.8 1645.4321 1644.7476 8879.0 1 3.455 53.8 1 K.INAS*ELASPRGHRR.Y YMR287C 1 1 3.9% 969 110822 9.0 U MSU1 SGDID:S000004900, Chr XIII from 845344-842435, reverse complement, Verified ORF, "RNase, component of the mitochondrial degradosome along with the ATP-dependent RNA helicase Suv3p; the degradosome associates with the ribosome and mediates turnover of aberrant or unprocessed RNAs" * Jamie_phos_02_itms_30.19978.19978.4 3.415 0.0788 90.8 4467.5366 4469.6475 7359.6 1 2.739 18.5 1 K.QQAKVELDHT*RELDNDQATETVVDRS*VGPEKDIESINK.D YBR289W 1 1 3.9% 905 102556 8.3 U SNF5 SGDID:S000000493, Chr II from 779663-782380, Verified ORF, "One of 11 subunits of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf6p" * Jamie_phos_04_itms_7.10574.10574.4 3.1767 0.2297 99.5 4005.4565 4005.319 9863.8 178 3.76 18.6 1 R.TFRTPVPS*T*LMPGGVDVGPSVESYELRNTTTYKSR.P YHR020W 1 1 3.9% 688 77386 6.4 U YHR020W SGDID:S000001062, Chr VIII from 143989-146055, Uncharacterized ORF, "Protein required for cell viability" * Jamie_phos_02_itms_39.25836.25836.3 4.0006 0.3493 100.0 3052.9744 3053.476 8407.6 1 6.534 26.0 1 K.DAEEEVLQILDFYAGVYEELLAVPVVK.G Reverse_YKL103C 1 1 3.9% 514 57093 5.8 U LAP4 SGDID:S000001586, Chr XI from 247326-245782, reverse complement, Verified ORF, "Vacuolar aminopeptidase, often used as a marker protein in studies of autophagy and cytosol to vacuole targeting (CVT) pathway" * Jamie_phos_04_itms_36.28515.28515.2 2.0185 0.1089 92.1 2049.612 2050.4092 10120.1 208 3.595 28.9 1 K.LKVTLADVHSGIVGVGKEAR.W Reverse_YPL048W 1 1 3.9% 415 47088 8.4 U CAM1 SGDID:S000005969, Chr XVI from 464398-465645, Verified ORF, "Translational cofactor elongation factor-1 gamma, participates in the regulation of GTP-binding protein EF-1 alpha, may play a redundant role in the regulation of protein synthesis or another GTP-dependent process" * Jamie_phos_03_itms_6.06937.06937.2 1.446 0.147 90.5 1866.4321 1867.8322 8425.6 97 3.647 33.3 1 K.S*S*TETETAAPKAEEKK.K Reverse_YDR494W 1 1 3.9% 361 41216 10.0 U RSM28 SGDID:S000002902, Chr IV from 1436920-1438005, Verified ORF, "Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation" * Jamie_phos_01_itms_28.17157.17157.2 1.803 0.1417 95.0 1722.0122 1723.8096 7456.8 236 3.615 38.5 1 K.KEES*GMVVS*QLSLR.V YBR031W 1 1 3.9% 362 39092 10.6 U RPL4A SGDID:S000000235, Chr II from 300166-301254, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins" YDR012W 1 1 3.9% 362 39062 10.6 U RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins" Jamie_phos_01_itms_8.05092.05092.2 3.6227 0.4765 100.0 1507.8922 1507.6403 6412.3 1 7.811 69.2 1 K.LDQVWGSETVASSK.V YGL049C 1 3 3.8% 914 103899 7.6 U TIF4632 SGDID:S000003017, Chr VII from 409607-406863, reverse complement, Verified ORF, "Translation initiation factor eIF4G, subunit of the mRNA cap-binding protein complex (eIF4F) that also contains eIF4E (Cdc33p); associates with the poly(A)-binding protein Pab1p, also interacts with eIF4A (Tif1p); homologous to Tif4631p" * Jamie_phos_03_itms_6.07389.07389.3 3.8771 0.352 100.0 3791.4543 3790.8489 4864.9 1 5.573 23.5 3 K.SVTFNEPENESSSQDVDELVKDDDTTEISDTTGGK.T YPR112C 1 1 3.8% 887 101120 6.6 U MRD1 SGDID:S000006316, Chr XVI from 751917-749254, reverse complement, Verified ORF, "Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains" * Jamie_phos_01_itms_34.20595.20595.4 3.2188 0.0929 90.8 3869.0566 3873.2493 8345.9 138 3.089 19.7 1 K.RKAAAS*RQTFSWNS*LYMNQDAVLGSVAAKLGLEK.S Reverse_YIL143C 1 1 3.8% 843 95341 6.1 U SSL2 SGDID:S000001405, Chr IX from 83041-80510, reverse complement, Verified ORF, "Component of the holoenzyme form of RNA polymerase transcription factor TFIIH, has DNA-dependent ATPase/helicase activity and is required, with Rad3p, for unwinding promoter DNA; involved in DNA repair; homolog of human ERCC3" * Jamie_phos_04_itms_21.19422.19422.4 2.823 0.134 92.0 3297.1365 3291.8555 7907.0 10 3.398 21.0 1 K.ITCAATIGVLTKGAGCPLVIIGSRARGNGFMK.S YLL032C 1 1 3.8% 825 94597 7.2 U YLL032C SGDID:S000003955, Chr XII from 76746-74269, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_26.22406.22406.4 2.6947 0.1535 93.3 3471.4165 3467.5823 8058.6 248 3.727 19.4 1 K.KFVLGS*AS*SKSNTSNSNTNGNFRSMNNAKSR.T Reverse_YDR264C 1 1 3.8% 764 85840 5.7 U AKR1 SGDID:S000002672, Chr IV from 998317-996023, reverse complement, Verified ORF, "Palmitoyl transferase involved in protein palmitoylation; acts as a negative regulator of pheromone response pathway; required for endocytosis of pheromone receptors; involved in cell shape control; contains ankyrin repeats" * Jamie_phos_01_itms_19.11843.11843.4 2.4667 0.2025 95.6 3227.3765 3226.3079 10779.3 22 3.664 23.2 1 R.TLLPDEEAEDNHNVQENGSEEENGSRIAK.L Reverse_YFL047W 1 1 3.8% 714 82209 5.8 U RGD2 SGDID:S000001847, Chr VI from 40421-42565, Verified ORF, "GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p" * Jamie_phos_03_itms_32.23221.23221.4 3.0498 0.1646 96.1 3359.4565 3356.4688 8659.6 412 4.184 22.4 1 R.CRTELDVGFNQFS*GPNY*YNNYVIAQPK.F YDR158W 1 1 3.8% 365 39544 6.7 U HOM2 SGDID:S000002565, Chr IV from 770352-771449, Verified ORF, "Aspartic beta semi-aldehyde dehydrogenase, catalyzes the second step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis" * Jamie_phos_02_itms_4.04577.04577.2 3.0958 0.3113 100.0 1544.1122 1544.6709 7924.1 1 6.277 65.4 1 R.VAVSDGHTECISLR.F YDR166C 1 1 3.7% 971 112121 5.8 U SEC5 SGDID:S000002573, Chr IV from 789216-786301, reverse complement, Verified ORF, "Essential 107kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which has the essential function of mediating polarized targeting of secretory vesicles to active sites of exocytosis" * Jamie_phos_05_itms_24.22711.22711.4 3.4426 0.1218 95.6 4023.1765 4028.2 8076.3 187 3.124 17.6 1 K.GEEFITSVSQNLISFFT*SSQSSLPS*SLKDSTGDITR.S YGR124W 1 1 3.7% 572 64593 5.9 U ASN2 SGDID:S000003356, Chr VII from 739949-741667, Verified ORF, "Asparagine synthetase, isozyme of Asn1p; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway" * Jamie_phos_01_itms_24.14553.14553.3 2.8736 0.1347 93.8 2535.5942 2535.8125 7466.6 2 3.719 32.5 1 K.AFDTTDEPDVKPYLPEEILWR.Q YHR048W 1 1 3.7% 514 57838 8.8 U YHR048W SGDID:S000001090, Chr VIII from 204600-206144, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_03_itms_28.21154.21154.2 2.0483 0.157 96.9 2187.4722 2187.2842 9240.7 4 3.752 33.3 1 K.QSHEVTFNEDIADPEDIAR.H Reverse_YFL016C 1 1 3.7% 511 55561 9.2 U MDJ1 SGDID:S000001878, Chr VI from 106230-104695, reverse complement, Verified ORF, "Protein involved in folding of mitochondrially synthesized proteins in the mitochondrial matrix; localizes to the mitochondrial inner membrane; member of the DnaJ family of molecular chaperones" * Jamie_phos_01_itms_33.20362.20362.2 2.35 0.0952 92.8 2113.2122 2115.3079 7997.4 8 2.971 36.1 1 R.VVDGDQLGHPLDVTIT*KAR.N YOR117W 1 1 3.7% 434 48256 5.1 U RPT5 SGDID:S000005643, Chr XV from 545029-546333, Verified ORF, "One of six ATPases of the 19S regulatory particle of the 26S proteasome involved in the degradation of ubiquitinated substrates; recruited to the GAL1-10 promoter region upon induction of transcription" * Jamie_phos_01_itms_27.16364.16364.2 2.6993 0.2517 100.0 1871.6322 1872.0386 7844.9 84 4.902 36.7 1 K.DSYLILDTLPSEFDSR.V Reverse_YOR070C 1 1 3.6% 637 73289 7.2 U GYP1 SGDID:S000005596, Chr XV from 457821-455908, reverse complement, Verified ORF, "Cis-golgi GTPase-activating protein (GAP) for the Rab family members Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion" * Jamie_phos_03_itms_11.10823.10823.3 2.5731 0.136 90.2 2465.4243 2465.655 9040.5 11 3.866 28.4 1 R.VASTGMNSISNISSSTSKRSLT*R.T Reverse_YCL051W 1 1 3.6% 583 64792 8.1 U LRE1 SGDID:S000000556, Chr III from 35865-37616, Verified ORF, "Protein involved in control of cell wall structure and stress response; inhibits Cbk1p protein kinase activity; overproduction confers resistance to cell-wall degrading enzymes" * Jamie_phos_01_itms_53.32298.32298.3 2.6886 0.1607 95.0 2612.8442 2614.671 7176.9 243 4.115 25.0 1 R.NLQS*NGCKKPYGDKAY*RPNDK.L Reverse_YDR310C 1 1 3.5% 1062 118201 6.2 U SUM1 SGDID:S000002718, Chr IV from 1084310-1081122, reverse complement, Verified ORF, "Transcriptional repressor required for repression of middle sporulation-specific genes during mitosis; regulated by the pachytene checkpoint; a dominant mutation acts as a suppressor of silencing defects of SIR2 mutations" * Jamie_phos_01_itms_60.36648.36648.4 3.3703 0.1164 94.8 4185.0967 4185.6006 9913.9 322 3.129 18.1 1 R.STRVPAPQSVPNSPSSPIQHFKSS*PLLS*NIPIENKIR.N YLL003W 2 3 3.5% 946 112978 9.8 U SFI1 SGDID:S000003926, Chr XII from 143200-146040, Verified ORF, "Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the half-bridge of the SPB, required for progression through G(2)-M transition, has similarity to Xenopus laevis XCAP-C" * Jamie_phos_01_itms_31.18788.18788.2 3.0205 0.3288 100.0 2037.5122 2037.1443 7198.5 1 5.573 53.3 2 R.YDLNDIS*VEVIEDLYR.Q * Jamie_phos_02_itms_7.06411.06411.2 1.6567 0.1264 90.5 1992.3922 1993.1779 9171.0 15 3.46 37.5 1 K.NIENEDKLGALYELENK.F Reverse_YMR288W 1 1 3.5% 971 110028 7.3 U HSH155 SGDID:S000004901, Chr XIII from 845570-848485, Verified ORF, "U2-snRNP associated splicing factor that forms extensive associations with the branch site-3' splice site-3' exon region upon prespliceosome formation; similarity to the mammalian U2 snRNP-associated splicing factor SAP155" * Jamie_phos_05_itms_16.18300.18300.4 2.7819 0.1255 90.8 3867.6965 3868.2737 11006.3 88 3.919 19.2 1 K.WS*KRSHCAANIFPLLQNVGLAKAVVAAARS*TVNR.V YOR141C 1 1 3.5% 881 100209 4.8 U ARP8 SGDID:S000005667, Chr XV from 592587-589942, reverse complement, Verified ORF, "Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes" * Jamie_phos_01_itms_31.19260.19260.4 4.3933 0.2243 90.0 3856.4165 3854.0547 7822.0 65 4.016 21.1 1 K.NDPS*PIEWIFDDSKLYYGS*DALRCVDEKFVI.R YER091C 1 1 3.5% 767 85860 6.5 U MET6 SGDID:S000000893, Chr V from 342163-339860, reverse complement, Verified ORF, "Cobalamin-independent methionine synthase, involved in amino acid biosynthesis; requires a minimum of two glutamates on the methyltetrahydrofolate substrate, similar to bacterial metE homologs" * Jamie_phos_01_itms_47.28419.28419.3 3.5916 0.1799 98.7 3059.2144 3058.5366 5730.2 2 3.882 27.9 1 K.ADKDSLDLEPLSLLEQLLPLYTEILSK.L YJL012C 1 1 3.5% 721 83155 6.8 U VTC4 SGDID:S000003549, Chr X from 413314-411149, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion" * Jamie_phos_03_itms_13.11659.11659.3 3.3012 0.2749 100.0 3061.4043 3061.2446 7693.5 9 4.699 26.0 1 K.EFEREDSAITSIYFDNENLDLYYGR.L YJR098C 1 1 3.5% 655 74132 7.4 U YJR098C SGDID:S000003859, Chr X from 615070-613103, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; detectable in highly purified mitochondria" * Jamie_phos_02_itms_29.19503.19503.3 2.5891 0.1451 92.0 2412.5645 2415.882 9324.0 142 3.592 26.1 1 K.SALSLKATLNATTKFVLNAPVVR.N YGR234W 1 1 3.5% 399 44646 6.3 U YHB1 SGDID:S000003466, Chr VII from 959908-961107, Verified ORF, "Nitric oxide oxidoreductase, flavohemoglobin involved in nitric oxide detoxification; plays a role in the oxidative and nitrosative stress responses" * Jamie_phos_01_itms_7.04709.04709.2 2.0812 0.2077 99.5 1612.8322 1613.7308 9100.4 3 4.867 50.0 1 K.HVDELLAECANVDK.I Reverse_YOL010W 1 1 3.5% 367 40171 8.8 U RCL1 SGDID:S000005370, Chr XV from 307938-309041, Verified ORF, "RNA terminal phosphate cyclase-like protein involved in rRNA processing at sites A0, A1, and A2; does not possess detectable RNA cyclase activity" * Jamie_phos_03_itms_21.16935.16935.2 1.5371 0.1599 94.0 1748.1522 1750.7788 7110.7 4 3.615 45.8 1 R.LRFNQSGQFTT*Y*K.P Reverse_YOR227W 1 1 3.4% 1246 139457 8.9 U YOR227W SGDID:S000005753, Chr XV from 762825-766565, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_23.22415.22415.4 2.8438 0.166 95.5 4360.4565 4357.779 8420.9 82 3.325 16.7 1 K.EASVAPKSNSLENNVNQGSLPRQPSAITKTPVAATS*PLTATK.K YKR067W 1 1 3.4% 743 83645 9.5 U GPT2 SGDID:S000001775, Chr XI from 567560-569791, Verified ORF, "Glycerol-3-phosphate acyltransferase located in both lipid particles and the ER; involved in the stepwise acylation of glycerol-3-phosphate and dihydroxyacetone, which are intermediate steps in lipid biosynthesis" * Jamie_phos_01_itms_22.13373.13373.4 2.8397 0.1215 90.8 2694.8965 2699.9158 5314.0 176 3.124 24.3 1 R.MSVQSRSRSSSIHSIGSLAS*NALSR.V YJL112W 1 1 3.4% 714 80032 5.6 U MDV1 SGDID:S000003648, Chr X from 205222-207366, Verified ORF, "Peripheral protein of the cytosolic face of the mitochondrial outer membrane, required for mitochondrial fission; interacts with Fis1p and with the dynamin-related GTPase Dnm1p; contains WD repeats" * Jamie_phos_04_itms_26.22638.22638.3 2.698 0.125 90.2 3071.0942 3074.2131 10829.7 155 3.615 23.9 1 K.RT*EHGRFVKNASNTFEDIYSKT*RR.G YGL110C 1 1 3.4% 624 72043 7.0 U CUE3 SGDID:S000003078, Chr VII from 303414-301540, reverse complement, Uncharacterized ORF, "Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecular monoubiquitination" * Jamie_phos_01_itms_8.05130.05130.3 2.8165 0.121 91.9 2549.0645 2547.5615 9892.9 1 3.361 32.5 1 K.LLYEADEDERDDTYDEADVNR.S YOR201C 1 1 3.4% 412 46387 9.2 U YOR201C SGDID:S000005727, Chr XV from 721708-720470, reverse complement, Verified ORF, "Ribose methyltransferase that modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA" * Jamie_phos_01_itms_26.15815.15815.2 1.7988 0.1725 96.9 1586.2322 1585.7968 8320.5 14 3.821 42.3 1 R.SDFFVEIPFGGIEK.G YMR303C 1 3 3.4% 348 36732 6.7 U ADH2 SGDID:S000004918, Chr XIII from 874336-873290, reverse complement, Verified ORF, "Glucose-repressible alcohol dehydrogenase II, catalyzes the conversion of ethanol to acetaldehyde; involved in the production of certain carboxylate esters; regulated by ADR1" YOL086C 1 3 3.4% 348 36849 6.7 U ADH1 SGDID:S000005446, Chr XV from 160593-159547, reverse complement, Verified ORF, "Alcohol dehydrogenase, fermentative isozyme active as homo- or heterotetramers; required for the reduction of acetaldehyde to ethanol, the last step in the glycolytic pathway" Jamie_phos_02_itms_6.05539.05539.2 3.4959 0.4344 100.0 1251.9122 1252.413 6324.8 1 8.178 81.8 3 K.SISIVGSYVGNR.A YHR164C 2 2 3.3% 1522 171694 6.5 U DNA2 SGDID:S000001207, Chr VIII from 429180-424612, reverse complement, Verified ORF, "Essential tripartite DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, and helicase activities; required for Okazaki fragment processing; involved in DNA repair pathways; potential Cdc28p substrate" * Jamie_phos_02_itms_42.27306.27306.4 3.0339 0.2194 98.7 4213.5767 4217.7275 11089.7 70 3.776 18.1 1 K.RSASISVSPAKKTEEKEIIQNDS*KAILSKQT*KRKKK.Y * Jamie_phos_04_itms_14.15206.15206.2 2.0637 0.1429 96.1 1630.8522 1628.65 8000.4 29 3.908 46.2 1 K.SESQITIQGNT*NQK.S Reverse_YCR092C 1 1 3.3% 1047 119753 7.4 U MSH3 SGDID:S000000688, Chr III from 279903-276760, reverse complement, Verified ORF, "Mismatch repair protein, forms dimers with Msh2p that mediate repair of insertion or deletion mutations and removal of nonhomologous DNA ends, contains a PCNA (Pol30p) binding motif required for genome stability" * Jamie_phos_01_itms_55.33534.33534.4 2.9329 0.1159 91.0 4012.8164 4016.6514 7294.9 145 2.671 19.1 1 K.RLEESISFARNIIDKDLRALKAVNMGYSNYTLGKK.L Reverse_YGL008C 1 1 3.3% 918 99619 5.1 U PMA1 SGDID:S000002976, Chr VII from 482671-479915, reverse complement, Verified ORF, "Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases" Reverse_YPL036W 1 1 3.2% 947 102172 5.0 U PMA2 SGDID:S000005957, Chr XVI from 482841-485684, Verified ORF, "Plasma membrane H+-ATPase, isoform of Pma1p, involved in pumping protons out of the cell; regulator of cytoplasmic pH and plasma membrane potential" Jamie_phos_03_itms_29.21657.21657.4 2.4984 0.2159 96.3 3482.4165 3477.748 6831.9 140 4.314 20.7 1 K.RS*AALCATLMLDDPSVGEVTYPEHLS*LKNK.T YJL168C 1 1 3.3% 733 84540 8.5 U SET2 SGDID:S000003704, Chr X from 104421-102220, reverse complement, Verified ORF, "Histone methyltransferase with a role in transcriptional elongation, methylates a lysine residue of histone H3; associates with the C-terminal domain of Rpo21p; histone methylation activity is regulated by phosphorylation status of Rpo21p" * Jamie_phos_01_itms_42.25594.25594.3 3.7141 0.2807 100.0 2974.1943 2978.44 9901.9 88 5.088 25.0 1 K.FETYKRITKKDINVAAS*KMIDLRR.V YLR394W 1 1 3.3% 482 53863 10.2 U CST9 SGDID:S000004386, Chr XII from 907950-909398, Verified ORF, "Protein required for synaptonemal complex formation, may have a role in meiotic recombination; localizes to synapsis initiation sites on meiotic chromosomes; potential Cdc28p substrate" * Jamie_phos_02_itms_9.07541.07541.2 1.7768 0.1167 90.6 1833.5521 1832.876 10101.0 94 4.145 36.7 1 K.LPNLDILT*NNGSVS*SK.N Reverse_YOR272W 1 1 3.3% 460 51359 7.0 U YTM1 SGDID:S000005798, Chr XV from 832810-834192, Verified ORF, "Constituent of 66S pre-ribosomal particles, required for maturation of the large ribosomal subunit" * Jamie_phos_01_itms_28.17294.17294.2 2.0702 0.1789 98.0 1846.8922 1847.8931 7100.1 15 4.353 42.9 1 K.ESGLLHNVIES*LGY*R.K Reverse_YDR097C 1 1 3.2% 1242 140080 5.8 U MSH6 SGDID:S000002504, Chr IV from 643832-640104, reverse complement, Verified ORF, "Protein required for mismatch repair in mitosis and meiosis, forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; potentially phosphorylated by Cdc28p" * Jamie_phos_01_itms_53.32493.32493.4 3.1165 0.1032 91.5 4326.6167 4325.571 9418.3 69 2.767 17.5 1 K.FSSALTGYHT*AFFGLS*QIHTAVHHLVSEAIAFGDSSSGGR.G Reverse_YJR119C 1 1 3.2% 728 84984 6.2 U YJR119C SGDID:S000003880, Chr X from 646405-644219, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus" * Jamie_phos_01_itms_41.25220.25220.4 3.0623 0.2254 99.1 2870.0166 2865.8481 7520.1 134 4.143 25.0 1 K.TFY*LEDDIYPEEGDS*NNLNQISK.L Reverse_YKL185W 1 1 3.2% 588 65685 9.9 U ASH1 SGDID:S000001668, Chr XI from 94504-96270, Verified ORF, "Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate" * Jamie_phos_01_itms_30.18629.18629.2 2.0884 0.0895 90.5 2182.8323 2180.2961 6987.8 16 3.27 30.6 1 R.AT*NGFVNSAQKSIKNKS*PK.R Reverse_YMR211W 1 1 3.2% 475 55312 5.3 U DML1 SGDID:S000004824, Chr XIII from 689082-690509, Verified ORF, "Essential protein involved in mtDNA inheritance, may also function in the partitioning of the mitochondrial organelle or in the segregation of chromosomes, exhibits regions similar to members of a GTPase family" * Jamie_phos_01_itms_40.24444.24444.2 2.1385 0.1984 99.1 1867.5521 1869.8956 9184.0 108 4.19 35.7 1 R.DNSFETPIT*DSPFYR.H YBR078W 1 4 3.2% 468 48237 5.1 U ECM33 SGDID:S000000282, Chr II from 393118-393175,393506-394854, Verified ORF, "GPI-anchored protein of unknown function, has a possible role in apical bud growth; GPI-anchoring on the plasma membrane crucial to function; similar to Sps2p and Pst1p" * Jamie_phos_02_itms_6.05361.05361.2 2.6735 0.2943 100.0 1576.3121 1576.7441 6774.2 5 5.323 50.0 4 K.VGQSLSIVSNDELSK.A YBL005W-B 3 8 3.1% 1755 198968 8.2 U YBL005W-B SGDID:S000002147, Chr II from 221333-222637,222639-226601, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YLR227W-B 3 8 3.1% 1755 198404 7.9 U YLR227W-B SGDID:S000007376, Chr XII from 593440-594744,594746-598708, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YLR157C-B 3 8 3.1% 1755 198544 8.1 U YLR157C-B SGDID:S000007374, Chr XII from 481602-480298,480296-476334, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YJR029W 3 8 3.1% 1755 198616 8.3 U YJR029W SGDID:S000003790, Chr X from 478258-479558,479560-483526, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YGR161C-D 3 8 3.1% 1755 198558 8.5 U YGR161C-D SGDID:S000007368, Chr VII from 823020-821716,821714-817752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YGR027W-B 3 8 3.1% 1755 198656 8.2 U YGR027W-B SGDID:S000007406, Chr VII from 536061-537365,537367-541329, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YDR365W-B 3 8 3.1% 1755 198658 8.0 U YDR365W-B SGDID:S000007401, Chr IV from 1206987-1208291,1208293-1212255, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" YDR261C-D 3 8 3.4% 1604 181660 7.5 U YDR261C-D SGDID:S000007395, Chr IV from 992343-991039,991037-987528, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" Jamie_phos_02_itms_5.04889.04889.2 4.1977 0.3301 100.0 1825.2722 1825.0287 9277.7 1 7.164 56.7 4 K.TVDTTNYVILQGKESR.L Jamie_phos_03_itms_11.10920.10920.2 3.8846 0.3523 100.0 2090.5122 2090.2102 10211.0 1 7.37 56.2 3 R.LDQFNYDALTFDEDLNR.L Jamie_phos_03_itms_5.05766.05766.2 2.4537 0.3519 100.0 2128.5522 2129.245 9638.1 1 5.336 35.0 1 R.QTNSSLGGIGDSNAYTTINSK.K Reverse_YDL223C 1 1 3.0% 1046 113616 6.4 U HBT1 SGDID:S000002382, Chr IV from 60406-57266, reverse complement, Verified ORF, "Substrate of the Hub1p ubiquitin-like protein that localizes to the shmoo tip (mating projection); mutants are defective for mating projection formation, thereby implicating Hbt1p in polarized cell morphogenesis" * Jamie_phos_04_itms_12.13913.13913.4 3.1609 0.161 96.2 3751.8564 3756.6094 9710.6 305 4.1 19.4 1 R.GMFS*QKGAQEEGQEDDHY*DQEGEDSGYQHHR.P YBL113C 1 1 3.0% 792 86976 6.9 U YBL113C SGDID:S000002153, Chr II from 2658-280, reverse complement, Uncharacterized ORF, "Hypothetical protein" YPR204W 1 1 2.3% 1032 115156 6.7 U YPR204W SGDID:S000006408, Chr XVI from 944599-947697, Uncharacterized ORF, "subtelomerically-encoded DNA helicase" YPL283C 1 1 1.3% 1859 211114 7.2 U YRF1-7 SGDID:S000006204, Chr XVI from 6007-5989,5840-280, reverse complement, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YOR396W 1 1 2.0% 1224 137645 6.6 U YOR396W SGDID:S000007526, Chr XV from 1087185-1090859, Uncharacterized ORF, "Hypothetical protein" YNL339C 1 1 1.3% 1859 211098 7.2 U YRF1-6 SGDID:S000005283, Chr XIV from 6098-6080,5931-371, reverse complement, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YML133C 1 1 1.7% 1374 155553 8.0 U YML133C SGDID:S000004602, Chr XIII from 4684-3891,3791-461, reverse complement, Uncharacterized ORF, "Hypothetical protein" YLR467W 1 1 1.3% 1796 203780 7.6 U YRF1-5 SGDID:S000004459, Chr XII from 1072505-1077895, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YLR466W 1 1 1.7% 1382 156366 7.2 U YRF1-4 SGDID:S000004458, Chr XII from 1067084-1071232, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YLL067C 1 1 2.0% 1205 135236 8.0 U YLL067C SGDID:S000003990, Chr XII from 4301-4015,3915-585, reverse complement, Uncharacterized ORF, "Hypothetical protein" YLL066C 1 1 2.0% 1205 135646 7.9 U YLL066C SGDID:S000003989, Chr XII from 9836-9550,9450-6120, reverse complement, Uncharacterized ORF, "Hypothetical protein" YJL225C 1 1 1.4% 1758 197564 7.5 U YJL225C SGDID:S000003760, Chr X from 6130-4970,4581-466, reverse complement, Uncharacterized ORF, "Hypothetical protein" YIL177C 1 1 1.4% 1758 197511 7.4 U YIL177C SGDID:S000001439, Chr IX from 6147-4987,4598-483, reverse complement, Uncharacterized ORF, "Hypothetical protein" YHR219W 1 1 3.8% 624 70128 6.4 U YHR219W SGDID:S000001262, Chr VIII from 560173-562047, Uncharacterized ORF, "Hypothetical protein" YHL050C 1 1 3.4% 697 79026 6.6 U YHL050C SGDID:S000001042, Chr VIII from 3310-2670,1897-445, reverse complement, Uncharacterized ORF, "Protein of unknown function, potential Cdc28p substrate" YGR296W 1 1 1.3% 1859 211114 7.2 U YRF1-3 SGDID:S000003528, Chr VII from 1084870-1084888,1085037-1090597, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YER190W 1 1 1.4% 1681 190502 7.4 U YRF1-2 SGDID:S000000992, Chr V from 571475-576520, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" YEL077C 1 1 1.9% 1277 143091 7.2 U YEL077C SGDID:S000006409, Chr V from 4097-264, reverse complement, Uncharacterized ORF, "Hypothetical protein" YDR545W 1 1 1.3% 1796 203780 7.6 U YRF1-1 SGDID:S000002953, Chr IV from 1526304-1531694, Verified ORF, "Helicase encoded by the Y' element of subtelomeric regions, highly expressed in the mutants lacking the telomerase component TLC1; potentially phosphorylated by Cdc28p" Jamie_phos_01_itms_20.12394.12394.3 4.6241 0.2621 100.0 2917.5244 2917.1113 10231.0 1 5.631 34.8 1 R.NDEEYKEYLEDIEPYHGDPVGYLK.Y YMR058W 1 2 3.0% 636 72360 4.8 U FET3 SGDID:S000004662, Chr XIII from 388821-390731, Verified ORF, "Ferro-O2-oxidoreductase required for high-affinity iron uptake and involved in mediating resistance to copper ion toxicity, belongs to class of integral membrane multicopper oxidases" * Jamie_phos_01_itms_22.13898.13898.3 3.8618 0.0781 95.6 2265.2043 2265.3953 8420.2 2 4.266 40.3 2 R.DLHVDPEVLLNEVDENEER.Q YOL148C 1 1 3.0% 604 67797 9.6 U SPT20 SGDID:S000005508, Chr XV from 47572-45758, reverse complement, Verified ORF, "Subunit of the SAGA transcriptional regulatory complex, involved in maintaining the integrity of the complex" * Jamie_phos_04_itms_20.18707.18707.2 1.7069 0.1915 97.3 2051.7322 2049.1462 7553.9 153 3.702 32.4 1 R.MT*KKKQSASSTPSSTT*MS.- YIR006C 1 1 2.9% 1480 160266 5.3 U PAN1 SGDID:S000001445, Chr IX from 369905-365463, reverse complement, Verified ORF, "Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease" * Jamie_phos_03_itms_28.21065.21065.4 3.31 0.1255 95.1 4474.8965 4468.9707 11492.4 148 3.398 16.7 1 K.VEEAKIGHPDHARAPPVTAAPLPS*VTPVPPAVPVPQANTSNEK.S YPL019C 1 1 2.9% 835 96553 7.4 U VTC3 SGDID:S000005940, Chr XVI from 517016-514509, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion" * Jamie_phos_01_itms_23.14399.14399.3 3.8581 0.139 97.8 2799.6243 2800.9495 10228.6 52 4.105 26.1 1 R.SSVDSWSERNESDFVEALDKELEK.V YGR237C 1 1 2.9% 785 89241 9.1 U YGR237C SGDID:S000003469, Chr VII from 965660-963303, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm" * Jamie_phos_01_itms_43.26438.26438.3 2.9662 0.1651 95.8 2840.7244 2841.0327 7524.2 432 3.614 23.9 1 K.RS*KS*FAGMTDEELAKLEEFYISK.G YFL041W 1 1 2.9% 622 70880 5.2 U FET5 SGDID:S000001853, Chr VI from 49139-51007, Verified ORF, "Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron transport" * Jamie_phos_01_itms_30.18224.18224.2 1.914 0.1913 98.3 1950.4722 1951.1844 9016.3 259 4.139 29.4 1 K.VPTLTTLLTSGKLAS*DPR.I YNL167C 1 1 2.9% 647 70192 9.3 U SKO1 SGDID:S000005111, Chr XIV from 321361-319418, reverse complement, Verified ORF, "Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family that forms a complex with Tup1p and Ssn6p to both activate and repress transcription; cytosolic and nuclear protein involved in the osmotic and oxidative stress responses" * Jamie_phos_03_itms_4.04540.04540.2 1.6879 0.1229 90.5 2149.5122 2152.3042 10376.4 16 3.274 33.3 1 R.RMSSTSSTSKASRKNSIS*R.K Reverse_YGL095C 1 1 2.9% 577 67017 6.3 U VPS45 SGDID:S000003063, Chr VII from 330610-328877, reverse complement, Verified ORF, "Protein of the Sec1p/Munc-18 family, essential for vacuolar protein sorting; required for the function of Pep12p and the early endosome/late Golgi SNARE Tlg2p; essential for fusion of Golgi-derived vesicles with the prevacuolar compartment" * Jamie_phos_04_itms_27.22716.22716.2 1.8482 0.1216 91.8 2038.1122 2038.0961 9579.3 148 3.671 34.4 1 K.LLESQT*ACLS*ITPTTNK.D Reverse_YGL228W 1 1 2.9% 577 66862 5.9 U SHE10 SGDID:S000003197, Chr VII from 67598-69331, Verified ORF, "Putative glycosylphosphatidylinositol (GPI)-anchored protein of unknown function; overexpression causes growth arrest" * Jamie_phos_04_itms_16.16072.16072.2 1.7771 0.1195 91.2 2047.6322 2045.2102 10695.2 7 3.675 34.4 1 R.TIYQSIETS*GSKDFFIK.K YML123C 1 1 2.9% 587 64382 6.4 U PHO84 SGDID:S000004592, Chr XIII from 25801-24038, reverse complement, Verified ORF, "High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p" * Jamie_phos_02_itms_12.09314.09314.2 2.1091 0.111 92.8 1935.4722 1936.1284 9542.0 129 3.951 34.4 1 R.LALESIDDEGFGWQQVK.T Reverse_YNR051C 1 1 2.9% 515 57674 9.1 U BRE5 SGDID:S000005334, Chr XIV from 718329-716782, reverse complement, Verified ORF, "Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde and retrograde transport between the endoplasmic reticulum and Golgi compartments; null is sensitive to brefeldin A" * Jamie_phos_02_itms_21.14833.14833.2 1.9871 0.312 94.7 1782.8522 1780.7106 8307.8 1 5.23 42.9 1 I.PKEQT*SSET*PATTDK.V YGL097W 1 1 2.9% 482 53014 6.1 U SRM1 SGDID:S000003065, Chr VII from 321785-323233, Verified ORF, "Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; potentially phosphorylated by Cdc28p" * Jamie_phos_04_itms_42.31680.31680.2 1.4857 0.1449 91.4 1487.3922 1489.7611 7993.1 477 3.72 38.5 1 K.DVHGKARAVPLPTK.L YGR109W-B 2 2 2.8% 1547 178419 8.8 U YGR109W-B SGDID:S000007347, Chr VII from 707614-708463,708465-712258, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" Jamie_phos_04_itms_29.24002.24002.4 3.52 0.1625 97.7 4096.2563 4093.3733 9542.7 437 3.892 18.1 1 R.S*ET*VNNVRTYSAGNRGNPRNIKLSFAPTILEATDPK.S * Jamie_phos_01_itms_71.43108.43108.2 1.1026 0.2425 97.0 870.9522 869.8638 4466.1 46 3.729 41.7 1 K.PISST*ER.I Reverse_YMR128W 1 1 2.8% 1267 144954 6.3 U ECM16 SGDID:S000004735, Chr XIII from 523695-527498, Verified ORF, "Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis" * Jamie_phos_05_itms_33.28315.28315.4 2.741 0.1264 90.6 4028.7766 4028.4307 9380.2 319 3.539 18.1 1 K.KPTKSEKNIVKINSFGFS*LGS*GGFKAPRHDIFGSSK.K Reverse_YMR261C 1 1 2.8% 1054 118835 6.4 U TPS3 SGDID:S000004874, Chr XIII from 793368-790204, reverse complement, Verified ORF, "Regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway" * Jamie_phos_01_itms_24.14531.14531.3 3.2431 0.095 91.7 3046.4343 3047.3928 7861.7 11 3.696 23.2 1 K.AVDVVAPDVDPVSKSVPTIVASKSSS*RVR.P YHR027C 1 1 2.8% 993 109492 4.6 U RPN1 SGDID:S000001069, Chr VIII from 164704-161723, reverse complement, Verified ORF, "Non-ATPase base subunit of the 19S regulatory particle of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein?protein interactions" * Jamie_phos_01_itms_13.08380.08380.3 2.7121 0.17 95.1 3078.8943 3080.1992 9710.7 28 4.721 24.1 1 R.HLALEIGEVYNDQVEKDAEDETSSDGSK.S YGR240C 2 5 2.8% 987 107970 6.4 U PFK1 SGDID:S000003472, Chr VII from 973739-970776, reverse complement, Verified ORF, "Alpha subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes" * Jamie_phos_02_itms_9.07390.07390.2 3.9835 0.1916 100.0 1697.3322 1696.8083 8727.2 1 5.246 67.9 3 K.DAFLEATSEDEIISR.A * Jamie_phos_02_itms_5.04684.04684.2 3.2087 0.216 100.0 1356.2322 1356.5651 7431.9 3 4.529 70.8 2 K.LRAEVAALAAENK.- YJL157C 1 1 2.8% 830 94572 5.4 U FAR1 SGDID:S000003693, Chr X from 126245-123753, reverse complement, Verified ORF, "Cyclin-dependent kinase inhibitor that mediates cell cycle arrest in response to pheromone; also forms a complex with Cdc24p, Ste4p, and Ste18p that may specify the direction of polarized growth during mating; potential Cdc28p substrate" * Jamie_phos_04_itms_19.18045.18045.3 2.5294 0.1415 90.7 2950.1943 2947.2031 9787.1 350 3.442 22.7 1 K.T*RLIMDEHPHS*SLIEIEYFDLVK.Q Reverse_YCR065W 1 1 2.8% 564 63647 7.3 U HCM1 SGDID:S000000661, Chr III from 229305-230999, Verified ORF, "Forkhead transcription factor involved in cell cycle specific transcription of SPC110, encoding a spindle pole body (SPB) calmodulin binding protein; dosage-dependent suppressor of calmodulin mutants with specific defects in SPB assembly" * Jamie_phos_03_itms_9.09492.09492.2 1.8624 0.1163 91.3 2070.7922 2070.0898 8971.5 8 4.15 36.7 1 R.LPSLDEFNSNFS*TFY*K.R YLR197W 1 1 2.8% 504 56864 8.9 U SIK1 SGDID:S000004187, Chr XII from 546099-547613, Verified ORF, "Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects" * Jamie_phos_03_itms_9.09567.09567.2 2.2611 0.1873 99.1 1666.2122 1666.8866 7856.2 5 4.338 53.8 1 K.NELAIQEAMELYNK.D Reverse_YLR449W 1 1 2.8% 392 43903 4.7 U FPR4 SGDID:S000004441, Chr XII from 1030829-1032007, Verified ORF, "Nuclear protein, putative peptidyl-prolyl cis-trans isomerase (PPIase) with similarity to Fpr3p; overproduction suppresses the growth defect resulting from the absence of E3 ubiquitin-protein ligase Tom1p" * Jamie_phos_01_itms_19.11820.11820.2 1.834 0.1353 95.3 1305.3121 1305.5173 6883.8 260 3.461 55.0 1 K.EAKKDKKTTQK.K YKR095W 2 2 2.7% 1875 218454 5.2 U MLP1 SGDID:S000001803, Chr XI from 619447-625074, Verified ORF, "Myosin-like protein associated with the nuclear envelope, connects the nuclear pore complex with the nuclear interior; involved with Tel1p in telomere length control; involved with Pml1p and Pml39p in nuclear retention of unspliced mRNAs" * Jamie_phos_01_itms_30.18414.18414.3 4.3188 0.2263 100.0 3202.4343 3202.4475 8932.3 15 5.071 21.3 1 K.LEESTTSYESTINGLNEEITTLKEEIEK.Q * Jamie_phos_01_itms_14.08804.08804.4 3.5631 0.2753 92.9 2633.0166 2638.9531 6474.0 14 4.606 28.6 1 S.MEQS*GEIDVVLRKQLEAKVQEK.Q YPR026W 1 1 2.7% 1211 136920 5.4 U ATH1 SGDID:S000006230, Chr XVI from 615376-619011, Verified ORF, "Acid trehalase required for utilization of extracellular trehalose" * Jamie_phos_01_itms_61.36910.36910.4 3.437 0.0849 91.9 3954.7766 3957.3582 8407.2 106 3.857 18.8 1 K.DVSS*NIYNVILT*EDQPKIIVHKYVGIMSTEFNK.N YGR070W 1 1 2.7% 1155 131392 9.1 U ROM1 SGDID:S000003302, Chr VII from 627810-631277, Verified ORF, "GDP/GTP exchange protein (GEP) for Rho1p; mutations are synthetically lethal with mutations in rom2, which also encodes a GEP" * Jamie_phos_01_itms_29.17712.17712.4 3.7107 0.0693 92.1 3342.2966 3338.9685 6643.2 460 3.05 18.9 1 R.SKSS*PVSLTEISMIKGTPLVYPALLSLIAIK.F YPR042C 1 1 2.7% 1075 119508 8.8 U PUF2 SGDID:S000006246, Chr XVI from 653659-650432, reverse complement, Verified ORF, "Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins" * Jamie_phos_02_itms_31.20568.20568.4 3.5292 0.0748 91.7 3403.0166 3406.6067 8822.6 101 3.2 21.4 1 K.GVS*DTNYFGPLPEHNS*KVPKRKDTFDAPK.L YER151C 1 2 2.7% 912 101917 7.8 U UBP3 SGDID:S000000953, Chr V from 472419-469681, reverse complement, Verified ORF, "Ubiquitin-specific protease that interacts with Bre5p to co-regulate anterograde and retrograde transport between endoplasmic reticulum and Golgi compartments; inhibitor of gene silencing; cleaves ubiquitin fusions but not polyubiquitin" * Jamie_phos_03_itms_8.08723.08723.3 3.2778 0.2777 100.0 2734.7043 2735.829 7424.4 49 5.271 26.0 2 R.IDDVNITELEDDDVLKGGEEASDSR.T YOR113W 1 1 2.7% 914 101170 7.4 U AZF1 SGDID:S000005639, Chr XV from 534075-536819, Verified ORF, "Zinc-finger transcription factor, involved in induction of CLN3 transcription in response to glucose; genetic and physical interactions indicate a possible role in mitochondrial transcription or genome maintenance" * Jamie_phos_05_itms_37.30737.30737.3 2.8493 0.1541 94.7 3091.0444 3091.3801 7188.4 30 3.902 25.0 1 K.HIDESGMQPNIIKKRKKDDST*VY*VK.N YBR133C 1 1 2.7% 827 95153 6.4 U HSL7 SGDID:S000000337, Chr II from 504281-501798, reverse complement, Verified ORF, "Protein arginine N-methyltransferase that exhibits septin and Hsl1p-dependent bud neck localization and periodic Hsl1p-dependent phosphorylation; required along with Hsl1p for bud neck recruitment, phosphorylation, and degradation of Swe1p" * Jamie_phos_05_itms_8.13504.13504.2 3.3659 0.3072 100.0 2581.412 2581.6624 7826.7 1 5.703 45.2 1 K.DTVQDEDDFTVEFSQSSLNEFK.I YPL106C 1 1 2.7% 693 77367 5.2 U SSE1 SGDID:S000006027, Chr XVI from 352272-350191, reverse complement, Verified ORF, "ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded proteins; member of the heat shock protein 70 (HSP70) family; localized to the cytoplasm" * Jamie_phos_05_itms_29.25908.25908.2 1.8633 0.1421 95.5 2075.0322 2073.3972 7617.3 35 3.677 33.3 1 K.TVKKDDLTIVAHTFGLDAK.K YAL011W 1 1 2.7% 625 72515 9.2 U SWC3 SGDID:S000000009, Chr I from 132202-134079, Verified ORF, "Protein of unknown function, component of the Swr1p complex that incorporates Htz1p into chromatin; required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae" * Jamie_phos_01_itms_33.20436.20436.2 1.6043 0.1334 90.8 2056.8323 2059.1052 8050.5 278 3.181 28.1 1 K.EEEDVKEKGVKS*EDTQK.K YHR035W 1 1 2.7% 630 72307 8.6 U YHR035W SGDID:S000001077, Chr VIII from 178212-180104, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_15.15642.15642.2 1.9077 0.1323 94.3 2082.4922 2085.1948 11246.6 51 3.906 37.5 1 K.IASRIIDSFAY*SSKHT*K.E YBR127C 2 5 2.7% 517 57749 5.1 U VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse complement, Verified ORF, "Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm" * Jamie_phos_01_itms_8.04925.04925.3 3.177 0.103 95.6 1745.9944 1746.8737 6092.7 8 4.153 42.3 1 R.FFKQDFEENGSLER.T * Jamie_phos_02_itms_5.05048.05048.2 2.9929 0.3086 100.0 1746.9321 1746.8737 8326.3 2 5.618 57.7 4 R.FFKQDFEENGSLER.T Reverse_YOL021C 1 1 2.6% 1001 113707 6.7 U DIS3 SGDID:S000005381, Chr XV from 285426-282421, reverse complement, Verified ORF, "Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p/Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family" * Jamie_phos_03_itms_37.26442.26442.3 2.4555 0.1899 94.7 3042.1743 3046.2935 11027.0 50 3.933 23.0 1 K.KAHLADDIDVCGPPDIS*CILKDRLDK.R Reverse_YJR061W 1 1 2.6% 935 108427 6.6 U YJR061W SGDID:S000003822, Chr X from 550425-553232, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_16.16244.16244.3 2.5374 0.1613 92.8 2857.0144 2860.0442 12095.3 68 3.539 23.9 1 K.YENNLTAIPRNPVFASVGS*FMT*NR.L YOL138C 1 1 2.5% 1341 149269 7.0 U YOL138C SGDID:S000005498, Chr XV from 65349-61324, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_02_itms_41.27074.27074.4 3.3366 0.1991 98.7 4065.9365 4061.5815 7992.6 151 4.575 18.7 1 K.IQT*LVDLISIATHNASVYLSIDDLT*NFKIWILIR.D Reverse_YCR033W 1 1 2.5% 1226 138397 9.1 U SNT1 SGDID:S000000629, Chr III from 186484-190164, Verified ORF, "Subunit of the Set3C deacetylase complex; putative DNA-binding protein" * Jamie_phos_01_itms_28.17018.17018.4 3.2366 0.1011 91.9 3499.3765 3503.8105 5595.5 218 3.337 21.1 1 K.DLKNADHFKKTHLS*PSSQSHTSKLITTSNAK.W YNL220W 1 1 2.5% 433 48279 8.1 U ADE12 SGDID:S000005164, Chr XIV from 234414-235715, Verified ORF, "Adenylosuccinate synthase, catalyzes the first committed step in the 'de novo' biosynthesis of adenosine" * Jamie_phos_01_itms_12.07398.07398.2 1.9026 0.2013 98.8 1384.6721 1384.4412 7261.1 219 4.751 50.0 1 R.YGDFEYDFEAK.L Reverse_YLR256W 1 1 2.4% 1502 166107 7.4 U HAP1 SGDID:S000004246, Chr XII from 646417-650925, Verified ORF, "Zinc finger transcription factor involved in the complex regulation of gene expression in response to levels of heme and oxygen; the S288C sequence differs from other strain backgrounds due to a Ty1 insertion in the carboxy terminus" * Jamie_phos_03_itms_30.22396.22396.4 3.5209 0.1009 94.2 4320.2163 4320.8926 8327.0 152 3.398 17.6 1 K.KSLQKT*LKQFLLMRS*MLIEALSDGSDLNVDKMFDDK.K YDR464W 1 1 2.4% 1435 161596 8.9 U SPP41 SGDID:S000002872, Chr IV from 1388862-1393169, Verified ORF, "Protein involved in negative regulation of expression of spliceosome components PRP4 and PRP3" * Jamie_phos_04_itms_22.19977.19977.4 3.312 0.0952 92.0 3803.5366 3807.2107 8569.4 282 3.327 19.2 1 R.PPQEKKKTKSKTSKAAST*ANKSPAS*ESTSKKKKK.K Reverse_YHL023C 1 1 2.4% 1146 129973 6.4 U RMD11 SGDID:S000001015, Chr VIII from 62561-59121, reverse complement, Verified ORF, "Protein required for sporulation" * Jamie_phos_05_itms_19.20275.20275.3 2.6544 0.1794 95.2 3023.9944 3026.4177 10465.0 171 4.066 22.2 1 K.KLTNESLSSIKSAISKKRSINTTTSSSR.K Reverse_YER129W 1 1 2.4% 1142 126872 8.7 U SAK1 SGDID:S000000931, Chr V from 417277-420705, Verified ORF, "Upstream kinase for the SNF1 complex; partially redundant function with Elm1p and Tos3p; members of this family of kinases have functional orthology with LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome" * Jamie_phos_04_itms_31.25391.25391.3 2.3393 0.1695 91.3 3069.6843 3068.4783 9270.7 165 3.956 22.1 1 K.SQKMRQYLSKIPSNKSGSKDSSNINIR.P YAL035W 1 1 2.4% 1002 112268 5.8 U FUN12 SGDID:S000000033, Chr I from 76428-79436, Verified ORF, "GTPase, required for general translation initiation by promoting Met-tRNAiMet binding to ribosomes and ribosomal subunit joining; homolog of bacterial IF2" * Jamie_phos_01_itms_60.36434.36434.3 2.3978 0.1639 91.9 2763.9543 2761.92 8894.1 44 3.719 23.9 1 K.ELNKQNVEKAAAEKAAAEKS*QKS*K.G YMR205C 1 1 2.4% 959 104618 6.7 U PFK2 SGDID:S000004818, Chr XIII from 674765-671886, reverse complement, Verified ORF, "Beta subunit of heterooctameric phosphofructokinase involved in glycolysis, indispensable for anaerobic growth, activated by fructose-2,6-bisphosphate and AMP, mutation inhibits glucose induction of cell cycle-related genes" * Jamie_phos_04_itms_19.18252.18252.3 2.9734 0.1746 96.5 2670.9543 2670.9812 9307.6 90 4.276 26.1 1 K.YEFDGLIIVGGFEAFESLHQLER.A YML034W 1 1 2.4% 834 95498 5.6 U SRC1 SGDID:S000004497, Chr XIII from 209525-211444,211571-212155, Verified ORF, "Protein with a putative role in sister chromatid segregation, potentially phosphorylated by Cdc28p; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery" * Jamie_phos_01_itms_28.17298.17298.2 1.9795 0.1301 95.2 2209.112 2207.235 8126.5 261 3.662 31.6 1 R.HNPKELGTANGTGHST*PLS*K.L YGL205W 1 1 2.4% 748 84042 8.5 U POX1 SGDID:S000003173, Chr VII from 108162-110408, Verified ORF, "Fatty-acyl coenzyme A oxidase, involved in the fatty acid beta-oxidation pathway; localized to the peroxisomal matrix" * Jamie_phos_01_itms_31.19136.19136.2 2.008 0.1417 95.8 2202.8323 2203.3708 4177.7 1 3.38 38.2 1 R.T*T*INPDSVVLNPQKFIQK.E Reverse_YPR007C 1 1 2.4% 680 77202 5.2 U REC8 SGDID:S000006211, Chr XVI from 571375-569333, reverse complement, Verified ORF, "Meiosis-specific component of sister chromatid cohesion complex; maintains cohesion between sister chromatids during meiosis I; maintains cohesion between centromeres of sister chromatids until meiosis II; homolog of S. pombe Rec8p" * Jamie_phos_02_itms_43.28041.28041.2 1.7104 0.1297 91.5 2100.4922 2098.1074 10527.0 12 3.728 36.7 1 R.NS*NS*LENIYDQRRISK.A Reverse_YFR048W 1 1 2.4% 662 75914 7.3 U RMD8 SGDID:S000001944, Chr VI from 246133-248121, Verified ORF, "Cytosolic protein required for sporulation" * Jamie_phos_05_itms_30.26862.26862.2 1.5352 0.1659 94.5 1977.9321 1980.1198 8909.1 1 3.617 40.0 1 R.PLRDFS*NS*KMSGVKPR.Q YBR121C 1 1 2.4% 667 75411 6.0 U GRS1 SGDID:S000000325, Chr II from 483361-481358, reverse complement, Verified ORF, "Cytoplasmic and mitochondrial glycyl-tRNA synthase that ligates glycine to the cognate anticodon bearing tRNA; transcription termination factor that may interact with the 3'-end of pre-mRNA to promote 3'-end formation" * Jamie_phos_03_itms_5.06164.06164.2 2.0963 0.1502 96.8 1730.3722 1730.9097 9938.9 4 4.876 43.3 1 K.VDGVDGEVELDDKLVK.I YDL233W 1 1 2.4% 458 51320 8.5 U YDL233W SGDID:S000002392, Chr IV from 36798-38174, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_6.08619.08619.3 1.7412 0.2218 92.8 1311.5944 1311.3232 1297.5 77 4.29 25.0 1 R.S*ASQAS*LSMLR.V YOR336W 1 1 2.3% 1365 156477 5.2 U KRE5 SGDID:S000005863, Chr XV from 949768-953865, Verified ORF, "Protein required for beta-1,6 glucan biosynthesis; mutations result in aberrant morphology and severe growth defects" * Jamie_phos_01_itms_39.24080.24080.4 3.9518 0.2733 100.0 3601.9365 3601.696 6534.5 285 4.063 19.4 1 N.DECVS*EWKKKINKFASSPGDEDVPGES*VSSK.Y YKL215C 1 1 2.3% 1286 140427 6.8 U YKL215C SGDID:S000001698, Chr XI from 30688-26828, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm" * Jamie_phos_05_itms_22.21882.21882.3 3.2424 0.3101 92.3 3126.8943 3123.1145 10489.8 124 4.889 20.7 1 K.GFGYYETICGGSGAGADSWRGS*GWNGSDAV.H YBR033W 1 1 2.3% 919 103397 8.6 U YBR033W SGDID:S000000237, Chr II from 301944-304703, Uncharacterized ORF, "Non-essential protein of unknown function" * Jamie_phos_01_itms_49.29523.29523.2 2.2352 0.1889 98.8 2239.4722 2242.3176 7311.1 106 3.795 30.0 1 R.SSLAILGSDSS*ISTEFGGNYR.L YOR270C 1 1 2.3% 840 95529 5.5 U VPH1 SGDID:S000005796, Chr XV from 830571-828049, reverse complement, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes" * Jamie_phos_02_itms_7.06173.06173.2 3.689 0.3868 100.0 2069.5923 2069.146 10582.6 1 7.752 52.8 1 K.IAESLDANLYDVDSSNEGR.S YFL004W 1 1 2.3% 828 95441 6.8 U VTC2 SGDID:S000001890, Chr VI from 131805-134291, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in protein localization and non-autophagic vacuolar fusion" * Jamie_phos_01_itms_24.14696.14696.3 3.6915 0.3327 100.0 2342.6643 2342.4749 9541.7 1 5.222 36.1 1 R.WDDSDESKFVEELDKELEK.V YOR168W 1 1 2.3% 809 93133 8.4 U GLN4 SGDID:S000005694, Chr XV from 649303-651732, Verified ORF, "Glutamine tRNA synthetase, monomeric class I tRNA synthetase that catalyzes the specific glutaminylation of tRNA(Glu); N-terminal domain proposed to be involved in enzyme-tRNA interactions" * Jamie_phos_02_itms_6.05740.05740.3 3.0469 0.3465 100.0 2172.0544 2172.4863 7923.9 1 5.352 36.1 1 R.VGYFTLDKESTTSKVILNR.I YMR301C 1 1 2.3% 690 77522 9.6 U ATM1 SGDID:S000004916, Chr XIII from 869626-867554, reverse complement, Verified ORF, "Mitochondrial inner membrane transporter, exports mitochondrially synthesized precursors of iron-sulfur (Fe/S) clusters to the cytosol; member of the ATP-binding cassette (ABC) transporter family" * Jamie_phos_04_itms_8.11471.11471.2 1.7179 0.2194 98.6 1816.2122 1816.2412 7652.2 160 4.222 36.7 1 K.VRIRVLIALGLLIS*AK.I YMR162C 1 1 2.2% 1656 188318 6.8 U DNF3 SGDID:S000004772, Chr XIII from 583920-578950, reverse complement, Verified ORF, "Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the trans-Golgi, likely involved in protein transport" * Jamie_phos_01_itms_38.22965.22965.4 3.8506 0.0962 95.6 4130.3765 4128.364 7700.4 170 3.316 17.1 1 K.EENNKPVGVLVKDGNNDAQEVYT*LPS*SVVSSTAYLTK.S Reverse_YML006C 1 1 2.2% 774 87139 5.0 U GIS4 SGDID:S000004465, Chr XIII from 258416-256092, reverse complement, Verified ORF, "CAAX box containing protein of unknown function, proposed to be involved in the RAS/cAMP signaling pathway" * Jamie_phos_01_itms_41.25188.25188.2 1.9793 0.2318 99.8 2016.3322 2015.0177 7696.1 199 4.252 31.2 1 K.RDKNTAHTPNDIGS*LS*K.L Reverse_YLR177W 1 1 2.2% 628 71265 8.7 U YLR177W SGDID:S000004167, Chr XII from 511056-512942, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_04_itms_8.11425.11425.2 1.8999 0.1845 97.4 1461.3722 1459.4697 6033.1 16 3.474 46.2 1 R.SSS*ASVNDGRLTGK.I YNL083W 1 1 2.2% 545 61271 9.1 U SAL1 SGDID:S000005027, Chr XIV from 471379-473016, Verified ORF, "Probable transporter, member of the Ca2+-binding subfamily of the mitochondrial carrier family, with two EF-hand motifs; Pet9p and Sal1p have an overlapping function critical for viability; polymorphic in different S. cerevisiae strains" * Jamie_phos_02_itms_18.13135.13135.2 1.3236 0.1917 95.5 1533.2122 1532.6753 8237.0 57 3.983 40.9 1 K.IMT*KLEGCRDTK.D Reverse_YLR454W 2 2 2.1% 2628 303478 8.0 U YLR454W SGDID:S000004446, Chr XII from 1043995-1051881, Uncharacterized ORF, "The authentic, non-tagged protein was localized to the mitochondria" * Jamie_phos_02_itms_22.15315.15315.2 1.7464 0.1419 93.7 2014.0322 2011.2488 8656.2 5 3.269 43.3 1 K.ICS*KKKSESLALFYQK.T * Jamie_phos_03_itms_13.12021.12021.4 3.146 0.1732 97.6 4697.5366 4692.9683 7151.3 3 3.788 17.1 1 K.SIFGGGNDEPTEIFTREEERPLEKHLDNT*SS*KKSDIRLGK.I YFL033C 1 1 2.1% 1770 196530 6.5 U RIM15 SGDID:S000001861, Chr VI from 74425-69113, reverse complement, Verified ORF, "Glucose-repressible protein kinase involved in signal transduction during cell proliferation in response to nutrients, specifically the establishment of stationary phase; originally identified as a regulator of IME2" * Jamie_phos_01_itms_40.24592.24592.4 3.7094 0.0767 93.0 4177.0967 4181.606 9585.1 28 3.166 18.1 1 K.LPTPRRKLDSNGLFSDAYLNADIIPNPSIESTIS*IDR.D Reverse_YGL206C 1 1 2.1% 1653 187233 5.2 U CHC1 SGDID:S000003174, Chr VII from 107508-102547, reverse complement, Verified ORF, "Clathrin heavy chain, subunit of the major coat protein involved in intracellular protein transport and endocytosis; two heavy chains form the clathrin triskelion structural component; the light chain (CLC1) is thought to regulate function" * Jamie_phos_03_itms_14.12359.12359.4 3.1632 0.1098 92.6 3910.8564 3906.1687 8198.5 379 3.438 19.1 1 R.TVENGKALDVIAVSNTGDKTERVTVFHDSEFTTS*R.F YJR109C 1 1 2.1% 1118 123915 5.3 U CPA2 SGDID:S000003870, Chr X from 632856-629500, reverse complement, Verified ORF, "Large subunit of carbamoyl phosphate synthetase, which catalyzes a step in the synthesis of citrulline, an arginine precursor" * Jamie_phos_01_itms_37.22761.22761.2 2.8481 0.3273 100.0 2664.7722 2664.8489 11496.0 1 5.818 34.8 1 K.DINIPIAESFACETVDEALEAAER.V YGR258C 1 1 2.1% 1031 117838 5.2 U RAD2 SGDID:S000003490, Chr VII from 1010772-1007677, reverse complement, Verified ORF, "Single-stranded DNA endonuclease, cleaves single-stranded DNA during nucleotide excision repair to excise damaged DNA; subunit of Nucleotide Excision Repair Factor 3 (NEF3); homolog of human XPG protein" * Jamie_phos_02_itms_31.21118.21118.3 2.6318 0.1278 90.1 2654.9343 2657.0999 10294.1 314 3.221 25.0 1 R.LESLEDKRMAVDASIWIYQFLK.A YCR067C 1 1 2.1% 1065 114079 4.7 U SED4 SGDID:S000000663, Chr III from 236317-233120, reverse complement, Verified ORF, "Integral endoplasmic reticulum membrane protein, functions as a positive regulator of Sar1p probably through inhibition of GTPase activation by Sec23p; binds Sec16p, participates in vesicle formation, similar to Sec12p" * Jamie_phos_02_itms_26.18094.18094.3 2.7681 0.1195 90.8 2309.1243 2312.5383 8517.5 19 3.771 28.6 1 K.FHSISEPVSSAIVETATSSFSK.T YDR359C 1 1 2.1% 982 112502 9.0 U VID21 SGDID:S000002767, Chr IV from 1194875-1191927, reverse complement, Verified ORF, "Component of the NuA4 histone acetyltransferase complex" * Jamie_phos_05_itms_6.10327.10327.2 1.9683 0.1839 98.1 2464.6921 2465.7263 11651.1 21 3.434 32.5 1 K.RKTLLPGKENKLSDDGRIS*EK.S Reverse_YKL050C 1 1 2.1% 922 103144 6.1 U YKL050C SGDID:S000001533, Chr XI from 345264-342496, reverse complement, Uncharacterized ORF, "Putative protein of unknown function" * Jamie_phos_02_itms_42.27478.27478.2 1.9289 0.1783 97.3 2316.4521 2317.5608 11894.3 127 3.772 30.6 1 K.IY*LKKQAERAAFDPDELTK.P YER169W 1 1 2.1% 796 90211 9.1 U RPH1 SGDID:S000000971, Chr V from 523364-525754, Verified ORF, "Transcriptional repressor of PHR1, which is a photolyase induced by DNA damage; binds to AG(4) (C(4)T) sequence upstream of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway" * Jamie_phos_03_itms_26.19542.19542.2 1.6957 0.2078 98.1 2154.3123 2154.2517 8620.6 5 3.998 37.5 1 R.TEY*TIDLSDFQNTERLK.F YNL224C 1 1 2.1% 767 86950 5.7 U YNL224C SGDID:S000005168, Chr XIV from 227100-224797, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_02_itms_43.28316.28316.2 1.6618 0.1285 90.9 1956.2122 1956.1376 9483.4 203 3.731 33.3 1 R.LT*FPPLDPHGNKT*VMK.I Reverse_YFL002C 1 1 2.1% 606 69422 9.0 U SPB4 SGDID:S000001894, Chr VI from 146929-145109, reverse complement, Verified ORF, "Putative ATP-dependent RNA helicase, nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway; sediments with 66S pre-ribosomes in sucrose gradients" * Jamie_phos_03_itms_18.14880.14880.2 1.7528 0.117 90.9 1593.5122 1594.8107 6045.0 258 3.544 45.8 1 K.IFAVY*AKVGKDFR.D Reverse_YDR261W-B 1 1 2.0% 1770 201961 8.3 U YDR261W-B SGDID:S000007397, Chr IV from 981456-982748,982750-986769, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition" * Jamie_phos_04_itms_38.29832.29832.4 2.9561 0.1839 97.2 4289.6167 4294.8413 10474.7 69 3.653 17.6 1 K.FTKIPLPKT*MVDAINMKTEIY*YVYLNNGSVEDRLR.M YNL321W 1 1 2.0% 908 102499 7.1 U YNL321W SGDID:S000005265, Chr XIV from 34695-37421, Uncharacterized ORF, "Protein of unknown function, potential Cdc28p substrate" * Jamie_phos_01_itms_16.10203.10203.3 2.4574 0.1902 95.8 2054.9043 2055.9866 7405.5 461 4.584 30.9 1 K.NNHIS*ASGNS*TSGDHRLK.E YMR160W 1 1 2.0% 816 95097 6.9 U YMR160W SGDID:S000004770, Chr XIII from 575065-577515, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_03_itms_30.21969.21969.2 2.0888 0.1439 96.0 2171.4321 2173.2324 9915.9 18 3.555 36.7 1 K.QY*QNSNKIWLQEMDS*K.W Reverse_YPL207W 1 1 2.0% 810 89805 8.2 U YPL207W SGDID:S000006128, Chr XVI from 159908-162340, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_12.07674.07674.3 2.844 0.1654 97.1 1834.7644 1838.8864 9398.5 164 3.721 36.7 1 K.SVS*LKKGVRSNSS*SNK.S Reverse_YMR212C 1 1 2.0% 782 89191 7.5 U EFR3 SGDID:S000004825, Chr XIII from 693042-690694, reverse complement, Verified ORF, "Non-essential protein of unknown function; exhibits synthetic lethal genetic interactions with PHO85; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery" * Jamie_phos_02_itms_25.17032.17032.2 1.664 0.1282 90.7 1849.3922 1848.1736 10021.5 45 3.229 36.7 1 K.LDSVKPATARMTKWSR.A YBR058C 1 1 2.0% 781 88630 5.2 U UBP14 SGDID:S000000262, Chr II from 356015-353670, reverse complement, Verified ORF, "Ubiquitin-specific protease that specifically disassembles unanchored ubiquitin chains; involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; similar to human isopeptidase T" * Jamie_phos_05_itms_22.21908.21908.2 1.7967 0.2062 98.4 1802.4922 1804.8596 8106.3 38 4.811 40.0 1 K.STDSDISS*TALEKIEK.I Reverse_YDL113C 1 1 2.0% 640 72546 7.0 U ATG20 SGDID:S000002271, Chr IV from 258555-256633, reverse complement, Verified ORF, "Protein required for transport of aminopeptidase I (Lap4p) through the cytoplasm-to-vacuole targeting pathway; binds phosphatidylinositol-3-phosphate, involved in localization of membranes to the preautophagosome, potential Cdc28p substrate" * Jamie_phos_02_itms_22.15550.15550.2 1.64 0.1362 92.0 1752.1322 1749.7887 10930.2 7 3.647 50.0 1 R.S*Y*HKLIESLDVER.E YJR045C 1 1 2.0% 654 70628 5.6 U SSC1 SGDID:S000003806, Chr X from 521516-519552, reverse complement, Verified ORF, "Mitochondrial matrix ATPase that is a subunit of the presequence translocase-associated protein import motor (PAM); involved in protein translocation into the matrix and protein folding; member of the heat shock protein 70 (HSP70) family" * Jamie_phos_01_itms_7.04548.04548.3 4.2107 0.2021 100.0 1538.3944 1538.6543 7861.9 28 4.617 50.0 1 R.FKTETGIDLENDR.M YNR016C 2 2 1.9% 2233 250351 6.3 U ACC1 SGDID:S000005299, Chr XIV from 661376-654675, reverse complement, Verified ORF, "Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to form malonyl-CoA; required for de novo biosynthesis of long-chain fatty acids" * Jamie_phos_01_itms_30.18510.18510.3 3.4343 0.2598 100.0 2822.9043 2821.067 7350.1 5 4.372 27.2 1 K.LLETEDFEDNTITTGWLDDLITHK.M * Jamie_phos_02_itms_10.08046.08046.2 2.8778 0.2538 100.0 2060.672 2061.17 7495.8 2 6.08 38.9 1 R.AVS*VSDLSYVANSQSSPLR.E Reverse_YGR217W 1 1 1.9% 2039 234597 8.4 U CCH1 SGDID:S000003449, Chr VII from 924699-930818, Verified ORF, "Voltage-gated calcium channel involved in calcium influx in response to mating pheromones" * Jamie_phos_01_itms_33.20036.20036.4 3.495 0.1244 95.8 4453.4966 4452.7153 9769.4 1 3.992 21.2 1 K.LSLKPRSLNEHSSRGVRTRFINSILS*SDKDNGNY*EDGK.K YLR305C 1 1 1.9% 1900 214605 7.5 U STT4 SGDID:S000004296, Chr XII from 743865-738163, reverse complement, Verified ORF, "Phosphatidylinositol-4-kinase that functions in the Pkc1p protein kinase pathway; required for normal vacuole morphology, cell wall integrity, and actin cytoskeleton organization" * Jamie_phos_01_itms_59.35832.35832.4 3.0749 0.1069 91.7 4235.7764 4241.674 10994.7 42 3.433 18.6 1 K.KHKIDEEMS*KIEVKPDVY*LPSNPDGVVIDIDRKSGK.P YGR281W 1 1 1.9% 1477 166727 7.7 U YOR1 SGDID:S000003513, Chr VII from 1052830-1057263, Verified ORF, "Plasma membrane transporter of the ATP-binding cassette (ABC) family, mediates export of many different organic anions including oligomycin" * Jamie_phos_05_itms_26.24064.24064.4 2.8964 0.1312 92.8 3438.5764 3433.871 9764.7 376 3.523 21.0 1 K.KNKKKRKDT*WGKPS*ASTNKAKRLDNMLK.D YIL115C 1 1 1.9% 1460 158907 4.8 U NUP159 SGDID:S000001377, Chr IX from 148706-144324, reverse complement, Verified ORF, "Subunit of the nuclear pore complex that is found exclusively on the cytoplasmic side, forms a subcomplex with Nup82p and Nsp1p, required for mRNA export" * Jamie_phos_05_itms_30.26858.26858.3 2.7643 0.1532 93.8 3353.1543 3356.2478 9959.0 159 3.828 22.2 1 R.QS*SEVKESDDNMSLNSDRDESISES*YDK.L Reverse_YHR080C 1 1 1.9% 1345 149679 8.7 U YHR080C SGDID:S000001122, Chr VIII from 266840-262803, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_18.19615.19615.3 2.477 0.1626 91.8 2853.6843 2852.9023 9607.8 9 3.668 26.0 1 K.EKELAQVSLSPVS*NSNS*NGDQFRGK.L YPL226W 1 2 1.9% 1196 134331 5.9 U NEW1 SGDID:S000006147, Chr XVI from 121767-125357, Verified ORF, "ATP binding cassette family member; Asn/Gln-rich rich region supports [NU+] prion formation, susceptibility to [PSI+] prion induction and aggregation of a fragment of the human Machado-Joseph Disease protein" * Jamie_phos_02_itms_12.09490.09490.3 3.2728 0.2139 99.3 2587.8542 2587.716 9468.4 1 5.011 30.7 2 K.ERADEDEGIEIVNTDFSLAYGSR.M YLR014C 1 1 1.9% 904 102724 7.4 U PPR1 SGDID:S000004004, Chr XII from 174981-172267, reverse complement, Verified ORF, "Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p" * Jamie_phos_02_itms_31.20876.20876.2 1.5502 0.1341 90.6 2204.3523 2203.213 9930.3 208 3.152 31.2 1 K.NLIGFCESAKTCY*T*SYK.I YIL095W 1 1 1.9% 810 91032 9.6 U PRK1 SGDID:S000001357, Chr IX from 183934-186366, Verified ORF, "Protein serine/threonine kinase; regulates the organization and function of the actin cytoskeleton through the phosphorylation of the Pan1p-Sla1p-End3p protein complex" * Jamie_phos_01_itms_40.24587.24587.2 2.1704 0.1691 98.1 1711.6921 1713.9291 9615.5 255 3.775 39.3 1 R.SLSSKLKKVITGES*R.G YKL182W 2 2 1.8% 2051 228689 5.9 U FAS1 SGDID:S000001665, Chr XI from 100676-106831, Verified ORF, "Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities" * Jamie_phos_03_itms_8.08687.08687.3 3.0296 0.1791 97.7 2254.3442 2255.4058 8798.2 94 5.026 30.6 1 K.DSLWQSEHLEAVVDQDVQR.T * Jamie_phos_01_itms_24.14735.14735.3 3.5777 0.0545 92.8 2146.4043 2143.3142 7310.6 5 3.321 39.1 1 R.SKEWFQLDDEDFDLLNK.T YBR208C 1 1 1.8% 1835 201830 5.6 U DUR1,2 SGDID:S000000412, Chr II from 642205-636698, reverse complement, Verified ORF, "Urea amidolyase, contains both urea carboxylase and allophanate hydrolase activities, degrades urea to CO2 and NH3; expression sensitive to nitrogen catabolite repression and induced by allophanate, an intermediate in allantoin degradation" * Jamie_phos_02_itms_27.18528.18528.4 3.6214 0.1061 95.2 3807.6565 3811.024 9012.0 409 3.073 17.2 1 K.VS*TNILNSYQYEPTAIEIT*LPGAHTSIQDYPGR.V Reverse_YOL100W 1 1 1.8% 1081 121660 9.6 U PKH2 SGDID:S000005460, Chr XV from 129236-132481, Verified ORF, "Serine/threonine protein kinase involved in sphingolipid-mediated signaling pathway that controls endocytosis; activates Ypk1p and Ykr2p, components of signaling cascade required for maintenance of cell wall integrity; redundant with Pkh1p" * Jamie_phos_01_itms_42.25587.25587.2 2.3261 0.1767 98.6 2082.152 2082.538 11226.5 121 3.962 30.6 1 K.IGKKIINKQAKSSEKAIPK.Q YPL183C 1 2 1.8% 1013 114461 6.2 U YPL183C SGDID:S000006104, Chr XVI from 202535-199494, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_03_itms_10.09900.09900.2 2.9917 0.3181 100.0 2091.2722 2092.2207 9715.2 5 5.612 41.2 2 K.DSADIIETEEFHLDELSK.T YGL201C 1 1 1.8% 1017 112978 5.2 U MCM6 SGDID:S000003169, Chr VII from 120911-117858, reverse complement, Verified ORF, "Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex" * Jamie_phos_05_itms_16.18308.18308.3 2.2012 0.1668 90.8 2339.6343 2335.7146 6727.3 8 3.884 33.8 1 R.RYIKYARTFKPILT*KEAR.S YOR335C 1 1 1.8% 958 107277 5.5 U ALA1 SGDID:S000005862, Chr XV from 949104-946228, reverse complement, Verified ORF, "Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog" * Jamie_phos_03_itms_15.13242.13242.2 2.1244 0.1075 92.6 1730.3722 1732.8906 8165.4 8 4.171 40.6 1 R.TLTFALADGGVPNNEGR.G YDR096W 1 1 1.8% 894 99481 7.5 U GIS1 SGDID:S000002503, Chr IV from 637134-639818, Verified ORF, "Transcriptional factor, involved in the expression of genes during nutrient limitation; also involved in the negative regulation of DPP1 and PHR1" * Jamie_phos_05_itms_38.31690.31690.4 2.7403 0.1933 97.7 1957.2166 1952.0629 4244.7 50 3.928 33.3 1 R.HKKS*VHSGEKPHSCPR.C YHR182W 1 1 1.8% 785 90109 6.4 U YHR182W SGDID:S000001225, Chr VIII from 468219-470576, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and cytoplasm" * Jamie_phos_05_itms_29.26098.26098.2 1.5363 0.1771 95.6 1773.5521 1776.0607 7199.6 153 3.793 42.3 1 K.DYT*TGIKLFIKHMK.R YMR219W 2 2 1.7% 1658 187137 4.5 U ESC1 SGDID:S000004832, Chr XIII from 707132-712108, Verified ORF, "Protein localized to the nuclear periphery, involved in telomeric silencing; interacts with PAD4-domain of Sir4p" * Jamie_phos_04_itms_4.06048.06048.2 2.5016 0.0845 92.7 1763.9922 1764.884 8517.5 3 4.257 53.3 1 K.TDRGDLSSSVEIEVEK.V * Jamie_phos_01_itms_22.13821.13821.2 1.8293 0.1504 95.8 1483.9122 1482.4178 7033.7 90 3.587 45.8 1 K.ITEGS*SAAS*NTKR.R Reverse_YPR189W 1 1 1.7% 1432 163725 5.4 U SKI3 SGDID:S000006393, Chr XVI from 912660-916958, Verified ORF, "Protein involved in exosome mediated 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs; forms complex with Ski2p and Ski8p; required for repressing propagation of dsRNA viruses" * Jamie_phos_01_itms_21.12730.12730.4 3.2706 0.1261 95.1 2976.8564 2972.5151 8043.1 324 2.794 25.4 1 K.SLKSSLWSYLIMALPDKPFKKFY*K.I Reverse_YHR079C 1 1 1.7% 1115 126976 6.6 U IRE1 SGDID:S000001121, Chr VIII from 261593-258246, reverse complement, Verified ORF, "Serine-threonine kinase and endoribonuclease; transmembrane protein that initiates the unfolded protein response signal by regulating synthesis of Hac1p through HAC1 mRNA splicing" * Jamie_phos_03_itms_41.28476.28476.3 2.719 0.2502 99.3 2629.3442 2626.7766 7666.2 81 3.909 27.8 1 K.S*SHYKRYRELNDMFT*KDFK.V Reverse_YBR235W 1 1 1.7% 1120 123999 8.5 U YBR235W SGDID:S000000439, Chr II from 686896-690258, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_05_itms_41.33245.33245.3 2.4805 0.209 96.8 2018.0343 2017.0739 8307.2 106 4.128 30.6 1 R.RAS*LLSSSENSSSIASSPR.H YGL016W 1 3 1.7% 1081 123531 5.0 U KAP122 SGDID:S000002984, Chr VII from 461671-464916, Verified ORF, "Karyopherin beta, responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance" * Jamie_phos_04_itms_6.08451.08451.2 2.3952 0.2621 100.0 2130.652 2131.2139 9053.5 1 5.871 52.9 3 R.IIEEEGESTSVNEFEDFR.N Reverse_YNL014W 1 1 1.7% 1044 115868 6.2 U HEF3 SGDID:S000004959, Chr XIV from 606320-609454, Verified ORF, "Translational elongation factor EF-3; paralog of YEF3 and member of the ABC superfamily; stimulates EF-1 alpha-dependent binding of aminoacyl-tRNA by the ribosome; normally expressed in zinc deficient cells" * Jamie_phos_03_itms_13.11789.11789.2 1.8287 0.1773 97.1 2001.8522 2003.3964 5839.0 26 3.918 32.4 1 K.KRLEASSLKSKKKGSNIK.N Reverse_YOR098C 1 1 1.7% 1076 113581 9.6 U NUP1 SGDID:S000005624, Chr XV from 511178-507948, reverse complement, Verified ORF, "Nuclear pore complex (NPC) subunit, involved in protein import/export and in export of RNAs, possible karyopherin release factor that accelerates release of karyopherin-cargo complexes after transport across NPC; potential Cdc28p substrate" * Jamie_phos_05_itms_25.23579.23579.2 1.7606 0.1771 96.8 1964.1522 1966.9734 7755.7 60 3.928 35.3 1 K.IPSPTSSTCLYSGGEDS*K.S YIL038C 1 1 1.7% 836 94403 5.6 U NOT3 SGDID:S000001300, Chr IX from 282651-280141, reverse complement, Verified ORF, "Subunit of the CCR4-NOT complex, which is a global transcriptional regulator with roles in transcription initiation and elongation and in mRNA degradation" * Jamie_phos_01_itms_6.04236.04236.4 2.9648 0.1352 96.2 1819.7765 1825.2112 8174.1 375 3.451 35.9 1 K.REVKKLQRLREQIK.S YOR014W 1 1 1.7% 757 85335 6.3 U RTS1 SGDID:S000005540, Chr XV from 357673-359946, Verified ORF, "B-type regulatory subunit of protein phosphatase 2A (PP2A); homolog of the mammalian B' subunit of PP2A" * Jamie_phos_01_itms_17.10574.10574.2 1.8889 0.1711 97.3 1350.7322 1352.355 8579.5 8 3.987 58.3 1 K.TTGSSS*SSSSKKK.D Reverse_YDL138W 1 1 1.7% 763 83159 6.0 U RGT2 SGDID:S000002297, Chr IV from 213352-215643, Verified ORF, "Plasma membrane glucose receptor, highly similar to Snf3p; both Rgt2p and Snf3p serve as transmembrane glucose sensors generating an intracellular signal that induces expression of glucose transporter (HXT) genes" * Jamie_phos_01_itms_55.33269.33269.2 1.5911 0.1565 94.3 1594.0521 1593.8475 8245.8 8 4.011 50.0 1 K.MEIQQSIPFALCR.K Reverse_YDL031W 1 1 1.6% 995 113158 9.3 U DBP10 SGDID:S000002189, Chr IV from 394214-397201, Verified ORF, "Putative ATP-dependent RNA helicase of the DEAD-box protein family, constituent of 66S pre-ribosomal particles; essential protein involved in ribosome biogenesis" * Jamie_phos_05_itms_16.18100.18100.2 1.6294 0.1323 91.1 1868.7722 1867.2515 10733.6 11 3.795 46.7 1 K.KSPRANKARKKEAIIR.D Reverse_YGR140W 1 1 1.6% 956 111917 6.2 U CBF2 SGDID:S000003372, Chr VII from 767434-770304, Verified ORF, "Essential kinetochore protein, component of the CBF3 multisubunit complex that binds to the CDEIII region of the centromere; Cbf2p also binds to the CDEII region possibly forming a different multimeric complex, ubiquitinated in vivo" * Jamie_phos_01_itms_27.16557.16557.2 1.8939 0.1023 90.0 1849.9722 1848.97 8205.9 146 3.64 35.7 1 R.LFKALRSFS*GENQDR.L Reverse_YGL233W 1 1 1.6% 910 105064 4.9 U SEC15 SGDID:S000003202, Chr VII from 59122-61854, Verified ORF, "Essential 113kDa subunit of the exocyst complex (Sec3p, Sec5p, Sec6p, Sec8p, Sec10p, Sec15p, Exo70p, and Exo84p), which mediates polarized targeting of vesicles to active sites of exocytosis; Sec15p associates with Sec4p and vesicles" * Jamie_phos_05_itms_25.23590.23590.2 1.6987 0.1244 90.6 1968.2322 1971.1742 9483.5 5 3.728 42.9 1 R.YFISLFAT*IKS*YTKK.A Reverse_YER184C 1 1 1.6% 794 91077 7.8 U YER184C SGDID:S000000986, Chr V from 558675-556291, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_02_itms_30.20414.20414.2 1.6663 0.1326 91.6 1386.2722 1388.5205 8982.5 1 3.708 54.2 1 K.QLS*APASPPLQAK.L Reverse_YJR092W 1 1 1.5% 1448 165023 5.0 U BUD4 SGDID:S000003852, Chr X from 598649-602995, Verified ORF, "Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding; potential Cdc28p substrate" * Jamie_phos_01_itms_12.07704.07704.4 3.2089 0.1153 94.4 2378.6165 2382.8113 6139.8 274 3.625 25.8 1 K.GFFSKGVPVKDVIEVLEHRPK.E YGR270W 1 1 1.5% 1379 157406 5.2 U YTA7 SGDID:S000003502, Chr VII from 1027376-1031515, Verified ORF, "Protein of unknown function, member of CDC48/PAS1/SEC18 family of ATPases, potentially phosphorylated by Cdc28p" * Jamie_phos_01_itms_11.07205.07205.3 3.0021 0.1465 95.6 2600.0044 2600.4648 7600.3 1 4.093 31.2 1 R.SRTRHSRT*SNEENDDENDNSR.N YDR074W 1 1 1.5% 896 102976 8.1 U TPS2 SGDID:S000002481, Chr IV from 593889-596579, Verified ORF, "Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway" * Jamie_phos_02_itms_33.21783.21783.2 1.49 0.1354 90.2 1555.9722 1558.6635 9403.6 49 3.786 45.8 1 -.MTTTAQDNS*PKKR.Q Reverse_YNR011C 1 1 1.5% 876 99813 8.4 U PRP2 SGDID:S000005294, Chr XIV from 646952-644322, reverse complement, Verified ORF, "RNA-dependent ATPase in the DEAH-box family, required for activation of the spliceosome before the first transesterification step in RNA splicing" * Jamie_phos_02_itms_9.07573.07573.2 1.7288 0.1432 94.1 1573.2122 1572.774 9959.9 4 3.893 58.3 1 K.TRSGLKS*MIEELK.T YCL054W 1 1 1.5% 841 96485 8.0 U SPB1 SGDID:S000000559, Chr III from 31449-33974, Verified ORF, "AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation; methylates G2922 in the putative tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921; suppressor of PAB1 mutants" * Jamie_phos_01_itms_13.08276.08276.2 1.7867 0.1958 98.1 1424.6322 1427.6005 6064.9 145 3.984 45.8 1 K.LKGQEGDHKLSSK.A Reverse_YCL014W 1 1 1.4% 1636 184718 6.2 U BUD3 SGDID:S000000520, Chr III from 96280-101190, Verified ORF, "Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding" * Jamie_phos_01_itms_18.11084.11084.4 3.3975 0.1014 93.9 2762.2166 2767.0898 6349.9 206 2.962 25.0 1 K.PSSKKES*TMPKKVPS*KPHRQSIK.K Reverse_YOR116C 1 1 1.4% 1460 162301 8.2 U RPO31 SGDID:S000005642, Chr XV from 544145-539763, reverse complement, Verified ORF, "RNA polymerase III subunit C160, part of core enzyme; similar to bacterial beta-prime subunit" * Jamie_phos_03_itms_7.08025.08025.2 1.3751 0.2633 98.8 2323.9922 2324.6575 5129.7 30 3.912 26.3 1 R.T*IGLVEGKYTMVDGLLQIHR.P YHR155W 1 1 1.4% 1228 143583 8.1 U YSP1 SGDID:S000001198, Chr VIII from 407106-410792, Uncharacterized ORF, "Mitochondrial protein with a potential role in promoting mitochondrial fragmentation during programmed cell death in response to high levels of alpha-factor mating pheromone or the drug amiodarone" * Jamie_phos_05_itms_24.23147.23147.2 2.0737 0.2984 90.0 1950.9122 1952.8999 9190.5 55 5.053 40.6 1 K.S*ISNGNNSEEKGLS*GWL.Y YPL137C 1 1 1.4% 1276 140891 7.4 U YPL137C SGDID:S000006058, Chr XVI from 296646-292816, reverse complement, Uncharacterized ORF, "Glc7-interacting protein whose overexpression relocalizes Glc7p from the nucleus" * Jamie_phos_05_itms_14.17249.17249.2 1.8189 0.2132 98.9 1727.2322 1729.8418 11740.1 118 4.48 32.4 1 R.LAS*SAINATASSSVGKGK.H Reverse_YDR128W 1 1 1.4% 1148 130946 5.9 U YDR128W SGDID:S000002535, Chr IV from 709544-712990, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_02_itms_49.31944.31944.2 1.9091 0.2338 99.5 1908.2322 1910.9976 10463.4 93 4.395 36.7 1 K.VQSAASRWSSTS*YFPR.H YKL092C 1 1 1.4% 1104 126663 8.8 U BUD2 SGDID:S000001575, Chr XI from 269103-265789, reverse complement, Verified ORF, "GTPase activating factor for Rsr1p/Bud1p required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types" * Jamie_phos_04_itms_44.32981.32981.2 1.9457 0.1622 96.8 1946.0322 1948.9988 7158.2 197 3.903 33.3 1 K.IDGT*VS*RINQKNLDSK.H YDL185W 1 1 1.4% 1071 118637 6.2 U TFP1 SGDID:S000002344, Chr IV from 126788-130003, Verified ORF, "Vacuolar ATPase V1 domain subunit A containing the catalytic nucleotide binding sites; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease" * Jamie_phos_02_itms_13.10222.10222.2 1.9622 0.1454 95.8 1675.3322 1676.9596 8744.8 327 3.495 39.3 1 K.TVNLYSKVVRGNGIR.N Reverse_YDL171C 1 1 1.3% 2145 238100 6.6 U GLT1 SGDID:S000002330, Chr IV from 155641-149204, reverse complement, Verified ORF, "NAD(+)-dependent glutamate synthase (GOGAT), synthesizes glutamate from glutamine and alpha-ketoglutarate; with Gln1p, forms the secondary pathway for glutamate biosynthesis from ammonia; expression regulated by nitrogen source" * Jamie_phos_01_itms_52.31598.31598.3 3.0472 0.1739 96.7 3305.0645 3302.536 10983.6 2 4.014 24.0 1 R.RAIET*WPEVQELPIS*VSNEFDLELLGR.L Reverse_YOR153W 1 1 1.3% 1511 170438 7.8 U PDR5 SGDID:S000005679, Chr XV from 619840-624375, Verified ORF, "Short-lived membrane ABC (ATP-binding cassette) transporter, actively exports various drugs, expression regulated by Pdr1p; also involved in steroid transport, cation resistance, and cellular detoxification during exponential growth" * Jamie_phos_01_itms_18.11380.11380.2 1.7237 0.1623 95.6 2025.0122 2027.3898 5250.0 11 3.969 38.9 1 K.DRPIGNVLIDGTIVGMTVR.E YMR129W 1 3 1.3% 1337 151652 6.7 U POM152 SGDID:S000004736, Chr XIII from 527803-531816, Verified ORF, "Nuclear pore membrane glycoprotein; may be involved in duplication of nuclear pores and nuclear pore complexes during S-phase;" * Jamie_phos_02_itms_9.07951.07951.2 3.615 0.3743 100.0 2166.7322 2167.247 7826.1 1 6.663 47.1 3 R.TDQYTIDNIDSENFSFEK.L YER129W 1 1 1.3% 1142 126872 8.7 U SAK1 SGDID:S000000931, Chr V from 417277-420705, Verified ORF, "Upstream kinase for the SNF1 complex; partially redundant function with Elm1p and Tos3p; members of this family of kinases have functional orthology with LKB1, a mammalian kinase associated with Peutz-Jeghers cancer-susceptibility syndrome" * Jamie_phos_05_itms_14.16902.16902.2 1.928 0.1665 96.9 1748.3121 1746.788 10171.4 53 3.901 42.9 1 R.S*PVFSGVT*NQPSPIR.P Reverse_YOL087C 1 1 1.3% 1116 125382 6.7 U YOL087C SGDID:S000005447, Chr XV from 158636-155286, reverse complement, Uncharacterized ORF, "Hypothetical protein" * Jamie_phos_01_itms_28.17399.17399.2 2.0643 0.1467 96.4 1734.3322 1731.7734 7333.3 9 3.769 50.0 1 R.S*LLSGSSQTRFY*PK.K YHR165C 1 1 1.2% 2413 279502 7.3 U PRP8 SGDID:S000001208, Chr VIII from 436950-429709, reverse complement, Verified ORF, "Component of the U4/U6-U5 snRNP complex, involved in the second catalytic step of splicing" * Jamie_phos_01_itms_18.11480.11480.4 3.3128 0.0963 92.0 3420.9365 3420.035 7874.2 59 3.351 22.2 1 R.KRAKKMTKKAKRSNLYT*PKAEMPPEHLR.K YNL271C 1 1 1.2% 1953 219701 6.5 U BNI1 SGDID:S000005215, Chr XIV from 135384-129523, reverse complement, Verified ORF, "Formin, nucleates the formation of linear actin filaments, involved in cell processes such as budding and mitotic spindle orientation which require the formation of polarized actin cables, functionally redundant with BNR1" * Jamie_phos_01_itms_14.08895.08895.3 2.7214 0.1538 93.9 2648.2444 2650.9778 6994.3 359 3.417 25.0 1 K.LTIMEFESLMHTYGEDSGDKFAK.I YOR341W 1 2 1.2% 1664 186431 7.1 U RPA190 SGDID:S000005868, Chr XV from 960982-965976, Verified ORF, "RNA polymerase I subunit; largest subunit of RNA polymerase I" * Jamie_phos_03_itms_4.04975.04975.2 3.2713 0.4083 100.0 2140.4922 2141.1692 8474.2 2 6.474 42.1 2 K.KLDGSNEASANDEESFDVGR.N YLR384C 1 1 1.2% 1349 152990 5.1 U IKI3 SGDID:S000004376, Chr XII from 892900-888851, reverse complement, Verified ORF, "Subunit of RNA polymerase II elongator histone acetyltransferase complex, involved in maintaining its structural integrity; negatively regulates exocytosis independent of transcription, homolog of human familial dysautonomia (FD) protein" * Jamie_phos_03_itms_32.23301.23301.2 1.5071 0.1817 95.6 1610.5922 1612.7861 9746.2 1 3.822 43.3 1 R.YTGKTGGTAKTGASRR.T Reverse_YBL047C 1 1 1.2% 1381 150783 4.7 U EDE1 SGDID:S000000143, Chr II from 132043-127898, reverse complement, Verified ORF, "Key endocytic protein involved in a network of interactions with other endocytic proteins, binds membranes in a ubiquitin-dependent manner, may also bind ubiquitinated membrane-associated proteins" * Jamie_phos_01_itms_32.19890.19890.2 1.9374 0.1687 96.9 1675.4122 1672.7465 8194.2 30 3.537 46.7 1 R.TLSSVGTSNASLPTT*R.N YOL078W 1 1 1.2% 1176 131378 6.7 U AVO1 SGDID:S000005438, Chr XV from 181681-185211, Verified ORF, "Component of a membrane-bound complex containing the Tor2p kinase and other proteins, which may have a role in regulation of cell growth" * Jamie_phos_01_itms_26.16209.16209.2 1.6471 0.1233 90.6 1503.2922 1500.5222 5302.1 218 3.343 42.3 1 R.ESSNGNIGSAS*RLK.S Reverse_YER176W 1 1 1.2% 1121 126970 9.4 U ECM32 SGDID:S000000978, Chr V from 541685-545050, Verified ORF, "DNA dependent ATPase/DNA helicase belonging to the Dna2p- and Nam7p-like family of helicases that is involved in modulating translation termination; interacts with the translation termination factors, localized to polysomes" * Jamie_phos_02_itms_24.16872.16872.2 1.9957 0.1194 93.5 1760.4722 1761.8466 10736.0 4 3.784 46.2 1 K.S*KENLT*PKSAKKNR.N YPL231W 1 1 1.1% 1887 206945 5.4 U FAS2 SGDID:S000006152, Chr XVI from 108652-114315, Verified ORF, "Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains beta-ketoacyl reductase and beta-ketoacyl synthase activities" * Jamie_phos_01_itms_16.09886.09886.3 3.4292 0.1888 99.0 2430.2644 2429.6482 8863.2 1 4.453 32.5 1 K.HQHGDKVDIFEIPETGEYSVK.L YCL014W 1 1 1.1% 1636 184718 6.2 U BUD3 SGDID:S000000520, Chr III from 96280-101190, Verified ORF, "Protein involved in bud-site selection and required for axial budding pattern; localizes with septins to bud neck in mitosis and may constitute an axial landmark for next round of budding" * Jamie_phos_01_itms_34.21108.21108.2 1.8295 0.1256 92.3 1955.4722 1958.0055 8847.8 6 3.269 35.3 1 R.AVNSKLS*GASDFDATHEK.K YGL173C 1 2 1.1% 1528 175459 7.5 U KEM1 SGDID:S000003141, Chr VII from 180119-175533, reverse complement, Verified ORF, "5'-3' exonuclease involved in mRNA decay, evolutionarily conserved component of cytoplasmic processing (P) bodies, plays a role in microtubule-mediated processes, filamentous growth, and ribosomal RNA maturation" * Jamie_phos_03_itms_5.05626.05626.2 2.2771 0.1482 97.3 2051.3123 2052.2427 7450.4 25 3.532 43.8 2 K.YQNAIIVEDKEELETEK.T YBL079W 1 1 1.1% 1502 169474 6.1 U NUP170 SGDID:S000000175, Chr II from 75256-79764, Verified ORF, "Abundant subunit of the nuclear pore complex (NPC), required for proper localization of specific nucleoporins within the NPC, involved in nuclear envelope permeability and in chromosome segregation, has similarity to Nup157p" * Jamie_phos_01_itms_35.21675.21675.2 2.5405 0.312 100.0 1873.5922 1873.1107 8436.3 64 5.857 34.4 1 K.NATALLEQIVDDLSIEK.L YKL010C 1 1 1.1% 1483 167842 4.9 U UFD4 SGDID:S000001493, Chr XI from 425518-421067, reverse complement, Verified ORF, "Ubiquitin-protein ligase (E3) that interacts with Rpt4p and Rpt6p, two subunits of the 19S particle of the 26S proteasome; cytoplasmic E3 involved in the degradation of ubiquitin fusion proteins" * Jamie_phos_01_itms_30.18256.18256.2 1.9274 0.113 91.7 1936.6122 1937.204 8943.0 24 3.37 40.0 1 R.IS*RKTIFATGLKILS*K.Y YMR261C 1 1 1.1% 1054 118835 6.4 U TPS3 SGDID:S000004874, Chr XIII from 793368-790204, reverse complement, Verified ORF, "Regulatory subunit of trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway" * Jamie_phos_04_itms_44.32990.32990.2 1.834 0.1444 95.6 1654.3121 1652.8192 10138.4 14 4.033 50.0 1 K.EYKRHFLQTCNR.L YDR311W 1 1 1.1% 642 72895 6.9 U TFB1 SGDID:S000002719, Chr IV from 1085060-1086988, Verified ORF, "Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair, target for transcriptional activators" * Jamie_phos_03_itms_46.31679.31679.1 1.0276 0.1171 100.0 788.6 787.7587 3080.5 202 4.255 50.0 1 K.S*SADSIK.N Reverse_YLR087C 1 1 0.9% 2958 338258 5.9 U CSF1 SGDID:S000004077, Chr XII from 315732-306856, reverse complement, Verified ORF, "Protein required for fermentation at low temperature" * Jamie_phos_04_itms_24.21196.21196.3 2.8192 0.1973 97.3 3075.5044 3079.1797 8960.8 261 4.065 20.2 1 K.ADGASAKYLSLGKWKHY*FNDDST*GASK.K YBL004W 1 1 0.9% 2493 287559 7.0 U UTP20 SGDID:S000000100, Chr II from 227639-235120, Uncharacterized ORF, "Possible snoRNA-binding protein, based on computational analysis of large-scale protein-protein interaction data" * Jamie_phos_05_itms_10.14386.14386.3 2.8151 0.1441 94.0 2615.6643 2619.8293 9771.0 413 3.735 26.2 1 K.VS*PS*TSSELCQMGLKFLSAFIR.H Reverse_YJR066W 1 1 0.9% 2470 281138 7.2 U TOR1 SGDID:S000003827, Chr X from 559330-566742, Verified ORF, "PIK-related protein kinase and rapamycin target; subunit of TORC1, a complex that controls growth in response to nutrients by regulating translation, transcription, ribosome biogenesis, nutrient transport and autophagy; involved in meiosis" * Jamie_phos_01_itms_15.09519.09519.3 3.3277 0.1729 97.8 2474.0645 2472.884 8779.0 2 3.465 28.4 1 K.VYPAIDPGVEYAIDGISILIQPK.D Reverse_YJL130C 1 1 0.9% 2214 245124 5.9 U URA2 SGDID:S000003666, Chr X from 172285-165641, reverse complement, Verified ORF, "Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes the first two enzymatic steps in the de novo biosynthesis of pyrimidines; both activities are subject to feedback inhibition by UTP" * Jamie_phos_01_itms_33.20433.20433.3 2.7699 0.1111 90.3 2433.6843 2433.566 8545.8 264 3.328 28.9 1 R.S*FKYRNEASDIMDPST*GLIK.V YMR229C 1 1 0.9% 1729 193133 6.2 U RRP5 SGDID:S000004842, Chr XIII from 731122-725933, reverse complement, Verified ORF, "Protein required for the synthesis of both 18S and 5.8S rRNA; C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA; component of small ribosomal subunit (SSU) processosome" * Jamie_phos_01_itms_30.18178.18178.2 2.7551 0.138 98.2 1888.9722 1888.035 9073.0 9 3.948 43.3 1 R.VDIAEVFDTYEEITDK.K YDR093W 1 1 0.9% 1612 182617 6.2 U DNF2 SGDID:S000002500, Chr IV from 631277-636115, Verified ORF, "Non-essential P-type ATPase that is a potential aminophospholipid translocase, localizes to the plasma membrane and late exocytic or early endocytic membranes, likely involved in protein transport; potential Cdc28p substrate" * Jamie_phos_05_itms_17.19033.19033.2 1.8197 0.1338 93.2 1872.6322 1872.9034 9205.5 76 3.526 35.7 1 R.RDQLS*PVTT*TNNLPR.R Reverse_YPL242C 1 1 0.9% 1495 172830 8.9 U IQG1 SGDID:S000006163, Chr XVI from 95109-90622, reverse complement, Verified ORF, "Essential protein required for determination of budding pattern, promotes localization of axial markers Bud4p and Cdc12p and functionally interacts with Sec3p, localizes to the contractile ring during anaphase, member of the IQGAP family" * Jamie_phos_01_itms_23.14271.14271.2 1.7101 0.1763 96.6 1695.7522 1698.7007 6356.1 122 4.015 42.3 1 R.Y*ASADLELTVRGS*R.P Reverse_YCR032W 1 1 0.7% 2167 250870 6.5 U BPH1 SGDID:S000000628, Chr III from 179515-186018, Verified ORF, "Protein homologous to human Chediak-Higashi syndrome protein and murine beige gene, which are implicated in disease syndromes due to defective lysosomal trafficking" * Jamie_phos_02_itms_9.07395.07395.2 1.7292 0.1387 92.5 1874.0521 1871.1528 8565.3 3 4.063 42.9 1 K.FDLSTNDKRFLILCK.K Reverse_YIL129C 1 1 0.6% 2376 269856 6.3 U TAO3 SGDID:S000001391, Chr IX from 113237-106107, reverse complement, Verified ORF, "Protein involved in cell morphogenesis and proliferation, associated with protein kinase Cbk1p; mutants activate OCH1 transcription" * Jamie_phos_03_itms_18.15208.15208.2 1.6572 0.1232 90.1 1917.7922 1920.0613 10734.8 263 3.143 32.1 1 R.S*IFS*VVQSMFDKKSR.F Reverse_YBR275C 1 1 0.6% 1916 217959 6.6 U RIF1 SGDID:S000000479, Chr II from 757101-751351, reverse complement, Verified ORF, "Protein that binds to the Rap1p C-terminus and acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; deletion results in telomere elongation" * Jamie_phos_01_itms_10.06419.06419.2 1.862 0.0997 90.3 1432.7522 1431.6322 6482.2 85 3.948 45.5 1 K.IQQTLLHGIT*VK.D YJL109C 1 1 0.6% 1769 200080 6.5 U UTP10 SGDID:S000003645, Chr X from 217226-211917, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA" * Jamie_phos_01_itms_10.06210.06210.2 1.7155 0.1113 90.6 1397.2322 1399.4172 6013.9 105 3.536 50.0 1 R.RSS*TS*KNAFLK.E YKR054C 1 1 0.4% 4092 471351 6.3 U DYN1 SGDID:S000001762, Chr XI from 547567-535289, reverse complement, Verified ORF, "Cytoplasmic heavy chain dynein, microtubule motor protein, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p" * Jamie_phos_05_itms_16.18128.18128.2 1.7685 0.2072 98.4 1983.2322 1984.9884 8126.0 203 4.151 34.4 1 K.RS*LLYALAGDSTGES*QR.A Proteins Peptide IDs Spectra Unfiltered 11783 308104 336362 Filtered 478 882 1713 Forward matches 326 727 1555 Decoy matches 152 155 158 Forward FP rate 46.63 21.32 10.16 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0