DTASelect v1.8 /wfs/bfd/3/scott/beth/ti4d /wfs/dbase/nci/yeastorf3.fasta --CGI -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank Include Modified peptide inclusion Any Tryptic status requirement Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ TotalIntensity SpRank IonProportion Redundancy Sequence pI ORFP:YDL075W 4 4 36.3% 113 12953 10.0 U RPL31A SGDID:S0002233, Chr IV from 322225-322281,322703-322987 ORFP:YLR406C 4 4 36.3% 113 12967 10.0 U RPL31B SGDID:S0004398, Chr XII from 931062-931118,931468-931752, reverse complement bethti4d-04.0455.0455.1 2.1091 0.2006 958.58 3899.1 2 62.5% 1 M.AGLKDVVTR.E 9.078125 bethti4d-04.0488.0488.2 2.7094 0.1877 958.86 4626.3 2 81.2% 1 M.AGLKDVVTR.E 9.078125 bethti4d-02.0684.0684.2 3.4197 0.2315 1098.67 5847.9 1 87.5% 1 A.PELNQAIWK.R 6.5625 bethti4d-06.1727.1727.2 5.7122 0.5404 2552.86 5405.6 1 59.1% 1 R.NEEEDAKNPLFSYVEPVLVASAK.G 4.251953 ORFP:YDL136W 5 5 30.8% 120 13910 10.6 U RPL35B SGDID:S0002295, Chr IV from 217600-217602,218008-218367 ORFP:YDL191W 5 5 30.8% 120 13910 10.6 U RPL35A SGDID:S0002350, Chr IV from 117665-117667,118159-118518 bethti4d-04.0690.0690.2 4.5681 0.3408 1459.33 6677.1 1 87.5% 1 K.SKEQLASQLVDLK.K 6.5625 bethti4d-05.0594.0594.2 4.8201 0.38 1587.61 7607.3 1 76.9% 1 K.SKEQLASQLVDLKK.E 8.640625 bethti4d-03.0675.0675.2 3.117 0.268 1372.45 8118.6 1 77.3% 1 K.EQLASQLVDLKK.E 6.5625 bethti4d-04.1014.1014.2 4.1667 0.3548 1632.46 6722.6 1 76.9% 1 K.SIACVLTVINEQQR.E 6.5625 bethti4d-02.0270.0270.2 3.0978 0.2455 1039.38 3277.0 1 100.0% 1 K.FEASQVTEK.Q 4.4570312 ORFP:YCR012W 6 9 24.3% 416 44738 7.6 U PGK1 SGDID:S0000605, Chr III from 137740-138990 * bethti4d-01.3339.3339.2 2.796 0.1632 1965.01 6391.5 1 41.2% 1 K.DVTFLNDCVGPEVEAAVK.A 3.9648438 * bethti4d-04.0034.0034.2 2.9602 0.2401 1440.74 6883.4 1 61.5% 3 K.ASAPGSVILLENLR.Y 6.5625 * bethti4d-04.0738.0738.3 3.7009 0.3429 2327.98 6132.8 1 36.9% 1 K.TVTDKEGIPAGWQGLDNGPESR.K 4.4023438 * bethti4d-05.0475.0475.1 1.8541 0.137 948.71 4957.9 1 68.8% 1 R.KLFAATVAK.A 10.035156 * bethti4d-02.0467.0467.2 5.0814 0.5205 1791.7 5375.7 1 73.7% 1 K.SSAAGNTVIIGGGDTATVAK.K 6.5625 * bethti4d-06.1218.1218.2 5.0996 0.5431 1756.55 5091.4 1 76.5% 2 K.ISHVSTGGGASLELLEGK.E 5.6328125 ORFP:YJR112W 5 9 23.9% 201 23640 4.9 U NNF1 SGDID:S0003873, Chr X from 636723-637328 * bethti4d-01.3415.3415.2 4.6479 0.2679 1400.17 6948.8 1 90.9% 1 K.LNELDELILEAK.E 3.9648438 * bethti4d-05.0131.0131.3 3.8106 0.3579 2382.09 6600.0 1 32.5% 1 R.YTDRDQDEVNKGPAIDELSSK.E 4.4160156 * bethti4d-04.0895.0895.2 2.5219 0.2828 2383.82 8793.5 1 32.5% 1 R.YTDRDQDEVNKGPAIDELSSK.E 4.4160156 * bethti4d-01.3350.3350.1 2.6032 0.1966 1189.66 6740.3 1 77.8% 1 K.DLETQVEVEK.N 3.9648438 * bethti4d-03.0722.0722.2 4.9444 0.3814 1731.6 7956.5 1 71.4% 5 K.DLETQVEVEKNEIGK.M 4.251953 ORFP:YLR344W 2 2 16.5% 127 14234 10.6 U RPL26A SGDID:S0004336, Chr XII from 819312-819330,819778-820142 * bethti4d-05.0460.0460.1 2.5449 0.1868 1256.71 4040.8 1 55.0% 1 R.KAYFTAPSSQR.R 9.980469 bethti4d-06.1162.1162.2 3.0431 0.3898 1084.48 4894.8 1 83.3% 1 R.RVLLSAPLSK.E 10.9921875 ORFP:YPL233W 2 3 14.4% 216 25416 4.8 U NSL1 SGDID:S0006154, Chr XVI from 106172-106822 * bethti4d-02.0086.0086.1 1.8444 0.1438 1231.4 7441.1 1 63.6% 1 K.SLEVVNADTVGK.T 4.4570312 * bethti4d-04.0718.0718.2 5.41 0.4636 2241.69 7272.9 1 61.1% 2 K.INEVYNNSKDEYLAQLDGR.I 4.4023438 ORFP:YHR174W 4 4 14.0% 437 46914 6.0 U ENO2 SGDID:S0001217, Chr VIII from 451325-452638 * bethti4d-05.1020.1020.2 2.5187 0.4104 1856.62 8057.7 1 44.1% 1 K.TAGIQIVADDLTVTNPAR.I 4.4570312 bethti4d-03.0654.0654.2 3.2471 0.3588 1288.93 5202.9 1 81.8% 1 K.VNQIGTLSESIK.A 6.5625 bethti4d-06.1896.1896.2 3.2271 0.3665 1822.07 8920.3 1 68.8% 1 R.SGETEDTFIADLVVGLR.T 3.9648438 * bethti4d-05.0556.0556.2 2.8503 0.2808 1558.45 11078.4 1 65.4% 1 K.AVYAGENFHHGDKL.- 6.5078125 ORFP:YOR096W 2 2 11.6% 190 21622 9.8 U RPS7A SGDID:S0005622, Chr XV from 505793-505936,506338-506766 bethti4d-06.1210.1210.2 2.6636 0.277 985.49 3122.4 1 92.9% 1 R.HVIFLAER.R 7.328125 * bethti4d-01.3360.3360.2 4.4448 0.415 1576.77 4319.6 3 61.5% 1 K.ILEDLVFPTEIVGK.R 4.142578 ORFP:YDR050C 2 2 11.3% 248 26795 6.0 U TPI1 SGDID:S0002457, Chr IV from 555721-556467, reverse complement * bethti4d-02.0478.0478.2 4.3906 0.4504 1524.15 7006.9 1 71.4% 1 K.ASGAFTGENSVDQIK.D 4.4570312 * bethti4d-05.0592.0592.2 3.5093 0.4002 1615.5 10636.6 1 70.8% 1 R.SYFHEDDKFIADK.T 4.8945312 ORFP:YGL076C 3 3 11.1% 244 27638 10.1 U RPL7A SGDID:S0003044, Chr VII from 364333-364343,364803-364896,365365-365994, reverse complement * bethti4d-02.0250.0250.2 2.7911 0.2659 975.22 6295.3 1 93.8% 1 K.TAEQVAAER.A 4.4570312 bethti4d-03.0322.0322.1 1.8049 0.449 686.37 4520.2 4 80.0% 1 R.NIIQAK.R 9.078125 bethti4d-03.0642.0642.2 2.987 0.2979 1227.3 5022.8 1 77.3% 1 K.LSNPSGGWGVPR.K 10.0625 ORFP:YJL177W 2 2 10.9% 184 20551 10.9 U RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654 bethti4d-03.0250.0250.2 2.6711 0.4126 1009.93 6317.8 1 83.3% 1 R.YGATSTNPAK.S 8.8046875 * bethti4d-04.0590.0590.2 3.3401 0.3788 1287.38 6250.9 1 83.3% 1 K.YLDQVLDHQR.A 5.6328125 ORFP:YBR196C 2 3 6.9% 554 61299 6.4 U PGI1 SGDID:S0000400, Chr II from 612194-613858, reverse complement * bethti4d-02.0462.0462.2 3.7231 0.4563 1584.38 9097.7 1 78.6% 1 K.TFTTAETITNANTAK.N 6.5625 * bethti4d-04.0760.0760.2 4.4036 0.5036 2495.84 8217.8 1 38.6% 2 K.ELDNSSTISTHDASTNGLINQFK.E 4.716797 ORFP:YIR010W 2 2 6.8% 576 65692 5.4 U DSN1 SGDID:S0001449, Chr IX from 375428-377158 * bethti4d-04.0679.0679.2 4.7072 0.4671 1913.78 6392.0 1 61.1% 1 R.LSMLASQANGGSTIISPHK.D 9.078125 * bethti4d-04.0772.0772.2 4.7657 0.4595 2267.4 7993.7 1 44.7% 1 K.ISSETDDDHSQVINPQQLLK.G 4.4023438 KERATIN02 2 2 6.6% 622 61987 5.2 U no description * bethti4d-03.0539.0539.2 3.2889 0.2873 1945.33 6636.9 1 52.9% 1 Q.ITQIEHEVSSSGQEVQSS.A 4.142578 * bethti4d-05.0850.0850.3 4.6045 0.3361 2512.98 12352.3 1 34.1% 1 K.EIETYHNLLEGGQEDFESSGAGK.I 4.1152344 ORFP:YAL038W 2 2 6.6% 500 54545 7.7 U CDC19 SGDID:S0000036, Chr I from 71788-73290 * bethti4d-06.1894.1894.2 3.7033 0.3544 2267.84 9644.1 1 47.4% 1 R.IIYVDDGVLSFQVLEVVDDK.T 3.8554688 * bethti4d-02.0552.0552.2 2.871 0.3237 1316.1 10402.0 1 66.7% 1 K.AIIVLSTSGTTPR.L 10.0625 ORFP:YDL229W 2 2 6.0% 613 66602 5.4 U SSB1 SGDID:S0002388, Chr IV from 44066-45907 ORFP:YNL209W 2 2 6.0% 613 66595 5.5 U SSB2 SGDID:S0005153, Chr XIV from 252058-253899 bethti4d-03.0538.0538.2 4.1086 0.4204 1219.42 6142.0 1 90.9% 1 K.SSNITISNAVGR.L 10.0625 bethti4d-06.1956.1956.2 4.8118 0.4159 2625.83 8593.8 1 47.9% 1 K.SKIEAALSDALAALQIEDPSADELR.K 4.1152344 KERATIN22 3 3 5.1% 645 65865 8.0 U no description * bethti4d-03.0442.0442.1 1.8014 0.2465 1255.36 3265.3 19 42.3% 1 R.GFSSGSAVVSGGSR.R 10.0625 * bethti4d-04.0920.0920.2 3.9647 0.4369 2256.81 10546.0 1 50.0% 1 R.TSQNSELNNMQDLVEDYKK.K 4.4023438 * bethti4d-04.0916.0916.3 3.7159 0.2362 2257.03 8199.9 1 33.3% 1 R.TSQNSELNNMQDLVEDYKK.K 4.4023438 KERATIN03 2 2 5.1% 593 59519 5.2 U no description * bethti4d-03.1039.1039.2 3.3425 0.4221 1709.59 7377.9 1 50.0% 1 K.GSLGGGFSSGGFSGGSFSR.G 10.0625 * bethti4d-04.0656.0656.2 2.6936 0.2305 1435.54 5010.4 1 75.0% 1 K.IRLENEIQTYR.S 6.5625 ORFP:YGR256W 2 2 2.0% 492 53923 7.3 U GND2 SGDID:S0003488, Chr VII from 1004621-1006099 ORFP:YHR183W 2 2 2.0% 489 53543 6.6 U GND1 SGDID:S0001226, Chr VIII from 470956-472425 bethti4d-04.0640.0640.2 3.3998 0.1731 1124.77 8191.4 1 88.9% 1 R.LPANLLQAQR.D 10.0625 bethti4d-03.0322.0322.1 1.8049 0.449 686.37 4520.2 4 80.0% 1 A.NLLQAQ.R 6.125 Proteins Peptide IDs Copies Unfiltered 2176 1912 3259 Redundant 23 54 63 Nonredundant 19 53 62 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0