DTASelect v1.9 /wfs/bfd/3/scott/beth/tii9c /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YBR031W 12 16 40.9% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 bethtii9c-05.0460.0460.2 2.6874 0.0913 1052.11 1052.175 6723.9 2 1193.2 93.8 1 K.RQAYAVSEK.A bethtii9c-05.0610.0610.2 3.2549 0.3398 1444.6 1445.491 8392.1 1 1029.2 61.5 2 K.AGHQTSAESWGTGR.A bethtii9c-01.2378.2378.2 3.5525 0.3089 1820.2 1821.127 8864.9 1 1478.2 58.3 2 R.YATASAIAATAVASLVLAR.G bethtii9c-05.1064.1064.2 3.2678 0.2717 1630.04 1630.885 6383.5 1 968.3 64.3 1 R.RGPLVVYAEDNGIVK.A bethtii9c-06.2082.2082.2 3.5581 0.3133 2611.29 2612.992 8185.4 1 948.2 42.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii9c-06.2086.2086.3 5.7868 0.4137 2398.25 2399.756 7622.1 1 1379.1 38.0 2 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii9c-06.2087.2087.2 4.0972 0.3679 2400.06 2399.756 8339.0 1 743.3 39.1 1 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii9c-02.0744.0744.2 2.5338 0.118 1507.91 1507.64 6156.3 1 708.5 61.5 1 K.LDQVWGSETVASSK.V bethtii9c-05.1146.1146.2 2.7268 0.3495 1846.64 1847.078 5185.4 2 327.2 43.8 1 K.VGYTLPSHIISTSDVTR.I bethtii9c-05.0910.0910.3 3.5202 0.1867 2112.85 2113.379 4227.6 1 593.2 35.5 1 R.IINSSEIQSAIRPAGQATQK.R bethtii9c-05.0911.0911.2 4.9414 0.4116 2113.14 2113.379 8238.4 1 924.0 52.6 2 R.IINSSEIQSAIRPAGQATQK.R * bethtii9c-05.0870.0870.2 3.2181 0.2876 1464.34 1464.702 3186.1 1 516.1 69.2 1 K.TGTKPAAVFTETLK.H ORFP:YDR012W 12 16 40.9% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii9c-05.0460.0460.2 2.6874 0.0913 1052.11 1052.175 6723.9 2 1193.2 93.8 1 K.RQAYAVSEK.A bethtii9c-05.0610.0610.2 3.2549 0.3398 1444.6 1445.491 8392.1 1 1029.2 61.5 2 K.AGHQTSAESWGTGR.A bethtii9c-01.2378.2378.2 3.5525 0.3089 1820.2 1821.127 8864.9 1 1478.2 58.3 2 R.YATASAIAATAVASLVLAR.G bethtii9c-05.1064.1064.2 3.2678 0.2717 1630.04 1630.885 6383.5 1 968.3 64.3 1 R.RGPLVVYAEDNGIVK.A bethtii9c-06.2082.2082.2 3.5581 0.3133 2611.29 2612.992 8185.4 1 948.2 42.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii9c-06.2086.2086.3 5.7868 0.4137 2398.25 2399.756 7622.1 1 1379.1 38.0 2 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii9c-06.2087.2087.2 4.0972 0.3679 2400.06 2399.756 8339.0 1 743.3 39.1 1 V.PGVETANVASLNLLQLAPGAHLGR.F bethtii9c-02.0744.0744.2 2.5338 0.118 1507.91 1507.64 6156.3 1 708.5 61.5 1 K.LDQVWGSETVASSK.V bethtii9c-05.1146.1146.2 2.7268 0.3495 1846.64 1847.078 5185.4 2 327.2 43.8 1 K.VGYTLPSHIISTSDVTR.I bethtii9c-05.0910.0910.3 3.5202 0.1867 2112.85 2113.379 4227.6 1 593.2 35.5 1 R.IINSSEIQSAIRPAGQATQK.R bethtii9c-05.0911.0911.2 4.9414 0.4116 2113.14 2113.379 8238.4 1 924.0 52.6 2 R.IINSSEIQSAIRPAGQATQK.R * bethtii9c-05.0902.0902.2 2.6521 0.2747 1433.92 1434.676 3973.6 1 513.3 69.2 1 K.TGTKPAAVFAETLK.H ORFP:YPR169W 18 129 31.5% 514 57517 5.2 U JIP5 SGDID:S0006373, Chr XVI from 878619-880163 * bethtii9c-06.2538.2538.2 4.2268 0.4321 2226.77 2227.647 9869.8 1 1367.5 52.6 4 K.KKTDVVDSTNLPILELLSLK.A * bethtii9c-01.2476.2476.2 6.2247 0.4962 2101.31 2099.473 7193.9 1 1667.3 69.4 7 K.KTDVVDSTNLPILELLSLK.A * bethtii9c-01.2644.2644.2 5.4157 0.408 1973.53 1971.299 5293.7 1 1018.2 67.6 5 K.TDVVDSTNLPILELLSLK.A * bethtii9c-01.2664.2664.2 3.1393 0.3178 1656.23 1655.973 3972.5 1 543.3 64.3 1 V.VDSTNLPILELLSLK.A * bethtii9c-01.2735.2735.2 3.363 0.2812 2106.95 2107.544 7768.7 1 611.0 44.4 1 K.APIFQSLLHPELPIIITGF.G * bethtii9c-06.2596.2596.2 3.7687 0.3886 2457.98 2459.894 6151.6 1 706.3 45.5 1 K.APIFQSLLHPELPIIITGFGTGH.I * bethtii9c-01.2936.2936.3 5.5117 0.4435 2459.21 2459.894 9365.6 1 2121.1 39.8 2 K.APIFQSLLHPELPIIITGFGTGH.I * bethtii9c-01.2935.2935.3 6.2058 0.4378 2387.17 2388.815 9566.3 1 3001.7 46.4 1 A.PIFQSLLHPELPIIITGFGTGH.I * bethtii9c-01.2943.2943.2 4.3238 0.3604 2178.79 2178.539 5307.6 1 595.3 50.0 1 I.FQSLLHPELPIIITGFGTGH.I * bethtii9c-01.2935.2935.2 3.3847 0.4047 1591.88 1589.834 9566.3 1 601.5 50.0 1 L.HPELPIIITGFGTGH.I * bethtii9c-04.0402.0402.2 3.0966 0.2864 962.37 963.079 8717.2 1 1193.6 87.5 1 R.RIDTATTGK.D * bethtii9c-02.1171.1171.2 3.5477 0.3692 1464.87 1465.603 6864.5 1 1152.3 73.1 1 K.GDNIFSVGSDNVLK.K * bethtii9c-05.1267.1267.2 4.904 0.4612 1498.22 1495.673 7653.6 1 1775.6 83.3 12 K.KVNLSSLFNSEEK.K * bethtii9c-06.1962.1962.3 5.9299 0.5247 3721.88 3722.116 9987.2 1 1141.5 25.0 4 K.LCASQTHPFILIGDESGNIHVINSENLALSNSIR.S * bethtii9c-06.2126.2126.3 4.3059 0.1995 1892.47 1893.065 10012.2 1 2130.6 51.7 1 R.SIHFGDSINDIFHFDK.R * bethtii9c-05.2830.2830.2 4.4425 0.4074 1892.49 1893.065 9906.9 1 1854.0 70.0 55 R.SIHFGDSINDIFHFDK.R * bethtii9c-02.2308.2308.2 5.0302 0.4152 1734.19 1731.989 10288.4 1 2020.7 75.0 29 K.FISLGQTTLAYFDVR.D * bethtii9c-05.2379.2379.2 2.759 0.3376 2214.33 2215.337 8861.7 1 828.6 50.0 2 R.NHSELDEVSFVDLDFEYR.V NRL_1MCOH 10 52 30.4% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii9c-01.1403.1403.2 3.2213 0.2211 1186.91 1187.381 4252.5 1 1087.6 81.8 1 K.GPSVFPLAPSSK.S * bethtii9c-01.1982.1982.2 3.0859 0.3903 2092.0 2093.344 7318.2 1 751.1 50.0 1 N.SGALTSGVHTFPAVLQSSGLY.S * bethtii9c-02.0892.0892.2 2.8461 0.1487 1685.48 1686.779 9815.8 1 1574.7 67.9 1 R.TPEVTCVVVDVSHED.P * bethtii9c-01.0160.0160.2 4.6913 0.4597 2139.14 2139.333 6084.9 1 1243.6 63.9 6 R.TPEVTCVVVDVSHEDPQVK.F * bethtii9c-01.1550.1550.2 4.6091 0.4084 1679.13 1677.859 8009.4 1 2044.3 84.6 12 K.FNWYVDGVQVHNAK.T * bethtii9c-06.2140.2140.2 5.2174 0.4275 1811.09 1809.119 7921.7 1 1562.0 70.0 26 R.VVSVLTVLHQNWLDGK.E * bethtii9c-01.2127.2127.2 3.9073 0.3702 1610.57 1610.853 7698.3 1 1588.8 76.9 1 V.SVLTVLHQNWLDGK.E * bethtii9c-02.1660.1660.3 3.9771 0.3694 3819.16 3817.169 9317.6 1 541.3 19.5 1 T.KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK.T * bethtii9c-02.1660.1660.2 4.8088 0.3619 2546.38 2545.681 9317.6 1 1909.8 54.8 2 K.GFYPSDIAVEWESNGQPENNYK.T * bethtii9c-02.1687.1687.2 4.6067 0.4091 1672.81 1672.875 8613.7 1 2264.7 78.6 1 T.PPVLDSDGSFFLYSK.L KERATIN02 9 17 24.3% 622 61987 5.2 U no description * bethtii9c-04.1454.1454.2 3.4996 0.3482 2705.8 2706.761 8966.5 1 875.5 35.5 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii9c-01.1738.1738.2 2.7537 0.3485 2391.37 2391.475 3772.7 1 204.4 30.8 1 S.FGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii9c-01.1424.1424.2 3.435 0.4379 2025.06 2024.07 9410.8 1 724.0 39.1 2 Y.SYGGGSGGGFSASSLGGGFGGGSR.G * bethtii9c-01.1907.1907.2 4.3401 0.3608 1838.1 1839.056 10807.0 1 1817.7 63.3 5 R.HGVQELEIELQSQLSK.K * bethtii9c-01.2655.2655.3 3.8664 0.2945 2737.73 2739.039 7274.8 1 763.2 29.5 1 R.YCGQLQMIQEQISNLEAQITDVR.Q * bethtii9c-01.2658.2658.2 4.8154 0.225 2738.0 2739.039 9198.5 1 1638.9 52.3 1 R.YCGQLQMIQEQISNLEAQITDVR.Q * bethtii9c-02.1611.1611.2 4.5287 0.3265 2097.2 2096.308 5385.4 1 782.1 62.5 4 R.QEIECQNQEYSLLLSIK.M * bethtii9c-06.1472.1472.2 3.3185 0.2783 2511.84 2511.618 9320.0 1 702.2 38.6 1 K.EIETYHNLLEGGQEDFESSGAGK.I * bethtii9c-04.0646.0646.3 5.8454 0.502 3223.34 3225.112 9628.4 1 774.5 22.4 1 R.GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK.S ORFP:YFR031C-A 3 3 23.2% 254 27408 11.1 U RPL2A SGDID:S0002104, Chr VI from 220494-220497,220645-221405, reverse complement ORFP:YIL018W 3 3 23.2% 254 27408 11.1 U RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930 bethtii9c-06.1746.1746.3 4.5123 0.2053 3178.0 3177.582 11255.1 1 1012.4 25.8 1 K.KASLNVGNVLPLGSVPEGTIVSNVEEKPGDR.G bethtii9c-01.1195.1195.2 2.6911 0.2319 1840.69 1842.018 8735.1 3 585.2 43.8 1 R.ASGNYVIIIGHNPDENK.T bethtii9c-01.1198.1198.1 2.0971 0.213 955.35 956.133 2396.8 3 121.6 60.0 1 R.GVIGVIAGGGR.V KERATIN03 6 10 15.2% 593 59519 5.2 U no description * bethtii9c-06.2040.2040.2 3.0369 0.2402 2367.32 2368.652 11747.7 1 836.1 42.5 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii9c-02.2295.2295.3 5.2566 0.2279 2367.44 2368.652 7782.7 1 1598.0 40.0 3 K.NQILNLTTDNANILLQIDNAR.L * bethtii9c-05.3084.3084.2 3.2931 0.4114 2096.1 2097.385 8322.6 1 1155.5 55.9 2 K.ADLEMQIESLTEELAYLK.K * bethtii9c-02.1651.1651.2 3.0345 0.424 1998.88 1998.151 11362.7 1 1403.7 59.4 1 K.ELTTEIDNNIEQISSYK.S * bethtii9c-02.2175.2175.2 2.631 0.0961 1797.07 1798.09 9266.1 1 1730.6 66.7 2 R.NVQALEIELQSQLALK.Q * bethtii9c-01.2675.2675.2 3.2933 0.3366 2085.35 2084.337 3599.3 1 483.2 61.8 1 L.SQIQAQISALEEQLQQIR.A KERATIN13 6 12 14.3% 643 65494 6.6 U no description * bethtii9c-05.2688.2688.3 4.8461 0.3932 1994.27 1995.202 8327.9 1 1257.9 41.7 1 R.THNLEPYFESFINNLR.R * bethtii9c-01.2039.2039.2 3.7102 0.473 1996.23 1995.202 6615.7 1 901.4 63.3 3 R.THNLEPYFESFINNLR.R * bethtii9c-04.0779.0779.2 2.9032 0.1425 1421.56 1422.581 8587.4 1 1346.4 77.3 1 K.RTNAENEFVTIK.K * bethtii9c-04.0414.0414.2 2.5781 0.1773 1073.57 1074.222 5594.8 2 908.4 81.2 1 R.LRSEIDNVK.K * bethtii9c-04.0820.0820.2 3.7846 0.4035 1846.14 1846.007 8331.6 1 1557.8 70.0 5 K.KQISNLQQSISDAEQR.G * bethtii9c-04.0702.0702.3 3.6364 0.1527 3312.25 3314.208 8582.2 1 717.3 21.7 1 R.GSYGSGGGSYGSGGSSYGSGGGGGGHGSYGSGSSSGGYR.G KERATIN22 5 5 12.4% 645 65865 8.0 U no description * bethtii9c-06.1255.1255.1 2.3343 0.3153 1320.36 1321.354 3682.3 2 143.5 43.3 1 R.HGGGGGGFGGGGFGSR.S * bethtii9c-06.1256.1256.2 3.3683 0.4812 1321.03 1321.354 6534.9 1 1006.8 66.7 1 R.HGGGGGGFGGGGFGSR.S * bethtii9c-01.1688.1688.2 2.5318 0.2626 1839.86 1840.005 8780.4 1 731.3 42.9 1 K.SISISVAGGGGGFGAAGGFGGR.G * bethtii9c-01.1751.1751.2 2.836 0.1617 2399.18 2400.445 8465.0 1 1272.2 41.4 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii9c-04.0535.0535.2 3.613 0.2838 1391.88 1392.508 9591.4 1 1661.5 77.3 1 R.SKEEAEALYHSK.Y ORFP:YBL027W 4 4 10.6% 189 21704 11.4 U RPL19B SGDID:S0000123, Chr II from 168385-168386,168771-169338 ORFP:YBR084C-A 4 4 10.6% 189 21704 11.4 U RPL19A SGDID:S0002156, Chr II from 414144-414145,414652-415219, reverse complement bethtii9c-02.1019.1019.2 3.3198 0.2721 1098.15 1098.333 6659.4 1 1247.7 93.8 1 R.LPSQVVWIR.R bethtii9c-06.1323.1323.2 3.0304 0.2478 1277.92 1278.541 8717.2 1 1829.4 90.0 1 K.RALVEHIIQAK.A bethtii9c-05.0834.0834.2 3.0037 0.3779 1121.88 1122.353 8433.4 1 1211.5 77.8 1 R.ALVEHIIQAK.A bethtii9c-05.0838.0838.1 2.2449 0.1594 1123.26 1122.353 1906.8 6 146.9 61.1 1 R.ALVEHIIQAK.A KERATIN18 4 6 10.3% 562 59822 8.0 U no description * bethtii9c-06.1114.1114.2 2.9918 0.3214 938.86 939.019 5016.1 1 848.8 93.8 1 R.RGFSASSAR.L * bethtii9c-01.0916.0916.2 2.6139 0.3236 1424.36 1425.467 6853.9 1 602.8 53.1 1 R.GSGGLGGACGGAGFGSR.S * bethtii9c-04.0838.0838.2 3.1524 0.351 1597.74 1599.707 6820.6 1 466.6 43.8 1 R.ISIGGGSCAISGGYGSR.A bethtii9c-01.2238.2238.2 3.0523 0.228 1890.84 1892.122 4946.0 1 902.9 71.4 3 R.QNLEPLFEQYINNLR.R KERATIN12 3 4 10.2% 431 47974 5.0 U no description bethtii9c-04.0648.0648.2 2.6379 0.2303 1222.97 1223.371 4197.9 1 773.1 88.9 1 R.TKFETEQALR.L * bethtii9c-01.2959.2959.2 4.8406 0.542 2633.99 2633.971 6180.5 1 1345.2 59.1 1 R.YCVQLSQIQGLIGSVEEQLAQLR.C bethtii9c-04.0835.0835.2 3.6003 0.3348 1379.61 1380.544 6408.8 1 985.6 80.0 2 K.TRLEQEIATYR.R KERATIN08 2 3 7.2% 469 50499 5.0 U no description * bethtii9c-01.2960.2960.2 4.5638 0.5153 2665.05 2666.031 5880.4 1 778.4 47.7 1 R.YCMQLSQIQGLIGSVEEQLAQLR.C bethtii9c-04.0835.0835.2 3.6003 0.3348 1379.61 1380.544 6408.8 1 985.6 80.0 2 K.TRLEQEIATYR.R KERATIN05 2 3 6.4% 471 51531 5.2 U no description * bethtii9c-02.1641.1641.2 3.1924 0.1887 2055.38 2055.339 9489.9 1 1487.8 55.6 1 K.ILTATVDNANVLLQIDNAR.L bethtii9c-04.0835.0835.2 3.6003 0.3348 1379.61 1380.544 6408.8 1 985.6 80.0 2 K.TRLEQEIATYR.R ORFP:YDL074C 2 2 5.0% 700 80692 6.4 U BRE1 SGDID:S0002232, Chr IV from 324046-326148, reverse complement * bethtii9c-01.1814.1814.2 2.7204 0.1005 2160.43 2160.67 4992.2 1 334.1 41.7 1 V.SRKLANIMALIVTLARFIE.T * bethtii9c-02.2941.2941.2 2.664 0.1502 1854.51 1852.181 9234.5 9 426.7 43.3 1 S.VISKLTVEKTKADQKY.F gi|7463016|pir||S77957 2 2 4.8% 269 27961 6.7 U lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes * bethtii9c-06.1216.1216.2 2.5534 0.2559 1207.67 1208.363 5783.6 1 895.7 72.7 1 K.RVLGQLHGGPSS.C * bethtii9c-04.0696.0696.2 2.9876 0.366 1211.99 1212.314 6314.5 1 1050.2 77.3 1 R.VLGQLHGGPSSC.S ORFP:YGR214W 2 2 4.4% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920570-920659,921115-921783 ORFP:YLR048W 2 2 4.4% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii9c-01.1667.1667.2 2.812 0.4488 1256.55 1257.389 10145.9 1 1035.2 70.0 1 F.TPGSFTNYITR.S bethtii9c-01.1670.1670.2 2.9717 0.3085 1155.46 1156.283 7972.3 1 1574.0 83.3 1 T.PGSFTNYITR.S ORFP:YKR061W 1 21 4.2% 425 50651 5.8 U KTR2 SGDID:S0001769, Chr XI from 557313-558590 * bethtii9c-05.1514.1514.2 3.996 0.1997 2211.31 2210.423 9123.1 3 780.6 47.1 21 D.SNHPDNIDLNVISCLRRW.W Proteins Peptide IDs Copies Unfiltered 4855 10868 16351 Redundant 21 103 307 Nonredundant 18 90 288 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0