DTASelect v1.9 /wfs/bfd/3/scott/beth/ti6f /wfs/dbase/nci/yeastorf4.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence NRL_1MCOH 16 43 32.9% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethti6f-02.1435.1435.1 3.0693 0.4234 1186.48 1187.381 5579.7 1 709.4 63.6 2 K.GPSVFPLAPSSK.S * bethti6f-02.1434.1434.2 3.2575 0.2978 1187.05 1187.381 3932.1 1 977.2 77.3 1 K.GPSVFPLAPSSK.S * bethti6f-02.1843.1843.2 3.4963 0.4602 2092.97 2093.344 7529.5 1 1039.3 52.5 1 N.SGALTSGVHTFPAVLQSSGLY.S * bethti6f-02.1700.1700.2 2.7391 0.4376 1765.2 1764.976 11807.9 1 824.5 50.0 1 L.TSGVHTFPAVLQSSGLY.S * bethti6f-02.0267.0267.1 1.873 0.0995 835.44 835.994 2976.8 27 272.4 75.0 1 K.DTLMISR.T * bethti6f-02.1371.1371.2 2.9768 0.1235 2139.65 2139.333 6161.6 1 964.3 55.6 1 R.TPEVTCVVVDVSHEDPQVK.F * bethti6f-02.1482.1482.2 3.1221 0.2132 1678.67 1677.859 7450.3 1 1139.2 69.2 1 K.FNWYVDGVQVHNAK.T * bethti6f-02.2166.2166.2 3.946 0.3391 1808.92 1809.119 8535.3 1 1333.5 63.3 13 R.VVSVLTVLHQNWLDGK.E * bethti6f-02.2100.2100.3 3.7892 0.258 2230.28 2229.584 5598.1 1 676.2 37.5 1 R.VVSVLTVLHQNWLDGKEYK.C * bethti6f-02.1200.1200.1 2.1036 0.1315 1161.58 1162.338 6237.3 3 418.7 66.7 1 K.NQVSLTCLVK.G * bethti6f-02.0331.0331.2 3.1907 0.2256 1162.56 1162.338 5096.9 1 930.5 77.8 7 K.NQVSLTCLVK.G * bethti6f-02.1770.1770.2 5.3298 0.3683 2545.06 2545.681 7884.6 1 1528.3 54.8 7 K.GFYPSDIAVEWESNGQPENNYK.T * bethti6f-01.2287.2287.1 2.0225 0.4345 1382.4 1383.497 2623.1 1 270.8 58.3 2 K.TTPPVLDSDGSFF.L * bethti6f-01.2295.2295.2 2.9079 0.2772 1383.15 1383.497 7971.1 1 945.7 62.5 2 K.TTPPVLDSDGSFF.L * bethti6f-02.1743.1743.3 3.5101 0.1952 1874.91 1875.085 8960.2 1 1129.1 40.6 1 K.TTPPVLDSDGSFFLYSK.L * bethti6f-02.1732.1732.2 5.6817 0.4598 1672.85 1672.875 9489.9 1 2978.2 85.7 1 T.PPVLDSDGSFFLYSK.L ORFP:YBR031W 5 6 31.5% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 5 6 31.5% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethti6f-02.2478.2478.3 4.6541 0.4445 3635.78 3636.186 5940.5 1 527.4 21.3 1 H.SLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNK.N bethti6f-02.3740.3740.2 3.2438 0.5186 1820.4 1821.127 11192.2 1 1568.0 58.3 1 R.YATASAIAATAVASLVLAR.G bethti6f-02.2014.2014.2 3.9733 0.4002 1884.41 1882.205 4067.9 1 743.8 65.6 2 K.IPEIPLVVSTDLESIQK.T bethti6f-02.2088.2088.2 4.5594 0.4083 2613.27 2612.992 8281.4 1 1157.5 46.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethti6f-02.1458.1458.2 4.4458 0.4835 1846.97 1847.078 4542.0 1 801.1 65.6 1 K.VGYTLPSHIISTSDVTR.I ORFP:YOR096W 6 6 28.9% 190 21622 9.8 U RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767 * bethti6f-02.1370.1370.2 2.5135 0.2596 1102.58 1102.322 5134.6 1 619.5 81.2 1 K.AELRPLQFK.S * bethti6f-02.2131.2131.2 3.285 0.3526 1667.94 1668.035 3399.6 1 398.5 56.7 1 K.ALAIFVPVPSLAGFHK.V bethti6f-02.1442.1442.1 2.0023 0.2161 984.61 985.174 5194.8 1 525.3 78.6 1 R.HVIFLAER.R bethti6f-02.1439.1439.2 2.7015 0.3491 985.55 985.174 3331.3 1 650.8 92.9 1 R.HVIFLAER.R * bethti6f-02.2086.2086.2 4.1954 0.2458 1573.75 1573.87 4646.1 3 604.3 61.5 1 K.ILEDLVFPTEIVGK.R bethti6f-02.0223.0223.1 2.5027 0.2644 1008.46 1009.104 8102.0 1 761.9 78.6 1 K.DVQQIDYK.L ORFP:YDL083C 4 4 28.7% 143 15847 10.3 U RPS16B SGDID:S0002241, Chr IV from 306925-306948,307381-307788, reverse complement ORFP:YMR143W 4 4 28.7% 143 15847 10.3 U RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902 bethti6f-02.1735.1735.2 3.2233 0.3589 1638.68 1637.917 7601.5 1 1020.4 64.3 1 K.VNGSPITLVEPEILR.F bethti6f-02.1991.1991.1 2.7138 0.4333 1358.52 1359.649 6546.5 1 973.2 72.7 1 K.VYEPLLLVGLDK.F bethti6f-02.1987.1987.2 4.0138 0.4065 1359.63 1359.649 4203.5 1 1243.5 86.4 1 K.VYEPLLLVGLDK.F bethti6f-02.1278.1278.2 4.1289 0.5116 1444.31 1444.633 5974.2 1 1386.2 76.9 1 R.VTGGGHVSQVYAIR.Q ORFP:YJR123W 4 5 24.9% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651595-652272 * bethti6f-02.3395.3395.3 5.9914 0.455 3057.32 3058.462 8842.1 1 991.0 27.8 2 K.HTLDIINVLTDQNPIQVVVDAITNTGPR.E * bethti6f-02.3395.3395.2 2.8914 0.2791 2038.64 2039.253 8842.1 1 522.2 41.7 1 L.TDQNPIQVVVDAITNTGPR.E * bethti6f-02.1719.1719.2 4.589 0.3619 1340.52 1340.609 8517.4 1 2216.5 87.5 1 R.VNQAIALLTIGAR.E * bethti6f-02.2422.2422.2 5.0553 0.359 1587.67 1587.811 8442.4 1 2242.7 78.6 1 K.TIAETLAEELINAAK.G ORFP:YCR031C 2 3 22.6% 137 14537 10.7 U RPS14A SGDID:S0000627, Chr III from 177492-177498,177806-178212, reverse complement ORFP:YJL191W 2 3 22.5% 138 14650 10.5 U RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610 bethti6f-02.1782.1782.2 5.8314 0.496 2014.67 2015.23 8959.1 1 2345.5 70.6 1 R.IYASFNDTFVHVTDLSGK.E bethti6f-02.0227.0227.2 3.4322 0.2943 1416.52 1416.528 4712.9 1 1105.2 83.3 2 R.IEDVTPVPSDSTR.K ORFP:YHL001W 3 4 21.7% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 3 4 21.7% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethti6f-02.1522.1522.2 4.4193 0.3722 1212.78 1213.46 8045.9 1 2058.5 90.0 2 K.LAAIVEIIDQK.K bethti6f-02.2566.2566.3 5.5194 0.3653 2051.52 2052.468 8089.7 1 1693.5 45.8 1 R.QAINLGQVVLTPLTFALPR.G bethti6f-02.2563.2563.2 5.4713 0.4952 2053.7 2052.468 7620.8 1 1574.7 66.7 1 R.QAINLGQVVLTPLTFALPR.G ORFP:YNL207W 9 14 19.8% 425 49125 5.3 U RIO2 SGDID:S0005151, Chr XIV from 255350-256627 * bethti6f-02.1571.1571.2 4.7619 0.5456 1901.89 1902.222 3544.9 1 807.3 68.8 2 R.SHEVVPTPLIHQISGMR.S * bethti6f-02.1570.1570.3 5.0402 0.4455 1902.75 1902.222 6821.8 1 1435.1 46.9 2 R.SHEVVPTPLIHQISGMR.S * bethti6f-02.1590.1590.1 1.8841 0.0984 1383.6 1384.615 8161.7 10 391.2 54.5 1 R.LTYNGIDYLALK.T * bethti6f-02.1587.1587.2 3.7989 0.4638 1383.94 1384.615 6815.3 1 1561.4 90.9 1 R.LTYNGIDYLALK.T * bethti6f-02.0242.0242.2 4.3697 0.5315 1410.47 1410.567 7073.5 1 1597.9 80.8 2 R.DTVYSVGNTIGVGK.E * bethti6f-02.1390.1390.2 3.8444 0.3493 1401.24 1401.542 10259.4 1 1401.3 72.7 1 K.SNQGANWMHLSR.L * bethti6f-02.1494.1494.2 5.3645 0.4932 1780.79 1780.932 8568.4 1 3260.3 86.7 1 K.RTDNLDELVQASGFSK.K * bethti6f-02.1339.1339.1 2.9107 0.3003 1372.78 1373.59 7345.8 1 899.6 66.7 1 R.IIEALSSGVENLK.M * bethti6f-02.1358.1358.2 5.1042 0.2976 1372.99 1373.59 7080.7 1 2001.6 87.5 3 R.IIEALSSGVENLK.M ORFP:YDR064W 2 2 15.9% 151 17029 10.4 U RPS13 SGDID:S0002471, Chr IV from 579453-579473,580013-580447 * bethti6f-02.1530.1530.2 2.5359 0.172 1382.75 1382.69 5607.9 1 824.1 66.7 1 R.KGLTPSQIGVLLR.D * bethti6f-01.1084.1084.2 2.7122 0.3502 1126.26 1126.208 6643.9 1 673.2 65.0 1 K.YESATASALVN.- ORFP:YJL177W 2 2 15.8% 184 20551 10.9 U RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654 ORFP:YKL180W 2 2 15.8% 184 20549 10.9 U RPL17A SGDID:S0001663, Chr XI from 109270-109578,109885-110130 bethti6f-02.1426.1426.2 5.9645 0.4669 1646.68 1645.856 8887.4 1 2612.3 80.0 1 K.FVQGLLQNAAANAEAK.G bethti6f-02.1314.1314.2 4.2124 0.4084 1497.7 1497.737 8430.0 1 1456.1 75.0 1 K.LYVSHIQVNQAPK.Q NRL_1MCOL 2 4 15.7% 216 22815 6.3 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain L... * bethti6f-02.1491.1491.2 3.8353 0.4336 2043.9 2044.269 3782.7 2 267.9 44.4 3 K.ANPTVTLFPPSSEELQANK.A * bethti6f-02.1642.1642.2 4.4749 0.3915 1744.66 1744.941 5866.3 1 1423.2 78.6 1 K.YAASSYLSLTPEQWK.S ORFP:YGR192C 3 3 15.4% 332 35747 7.0 U TDH3 SGDID:S0003424, Chr VII from 882814-883812, reverse complement * bethti6f-02.2322.2322.3 5.3697 0.3988 3174.11 3173.654 7766.1 1 1294.3 32.4 1 R.IALSRPNVEVVALNDPFITNDYAAYMFK.Y * bethti6f-02.2339.2339.2 5.1575 0.4015 2633.31 2632.991 5963.7 1 712.6 45.5 1 R.PNVEVVALNDPFITNDYAAYMFK.Y * bethti6f-02.0159.0159.2 5.7476 0.518 2404.92 2404.638 5000.1 1 1399.0 61.4 1 R.DPANLPWGSSNVDIAIDSTGVFK.E ORFP:YBR118W 4 6 14.8% 458 50033 9.0 U TEF2 SGDID:S0000322, Chr II from 477628-479004 ORFP:YPR080W 4 6 14.8% 458 50033 9.0 U TEF1 SGDID:S0006284, Chr XVI from 700590-701966 bethti6f-02.1323.1323.2 2.8249 0.3845 1355.93 1356.524 7987.8 1 1155.5 72.7 1 K.YQVTVIDAPGHR.D bethti6f-02.1866.1866.3 3.7828 0.2937 2364.81 2364.704 7473.2 1 856.9 32.5 2 K.TLLEAIDAIEQPSRPTDKPLR.L bethti6f-02.0320.0320.2 3.059 0.2942 1025.67 1026.224 5544.8 1 983.2 85.0 1 K.IGGIGTVPVGR.V bethti6f-02.1687.1687.2 5.3121 0.4658 2434.66 2431.893 4358.1 1 554.2 47.8 2 R.VETGVIKPGMVVTFAPAGVTTEVK.S KERATIN03 4 4 12.6% 593 59519 5.2 U no description * bethti6f-02.0264.0264.1 3.5232 0.3243 1382.7 1382.467 10528.6 1 911.3 63.6 1 R.ALEESNYELEGK.I * bethti6f-02.2042.2042.3 6.2107 0.3095 2368.95 2368.652 10432.1 1 2855.6 45.0 1 K.NQILNLTTDNANILLQIDNAR.L * bethti6f-02.2491.2491.2 2.7454 0.1463 2226.01 2225.559 10884.9 8 308.6 33.3 1 K.ADLEMQIESLTEELAYLKK.N * bethti6f-02.2715.2715.2 4.7805 0.558 2746.99 2748.075 9134.3 1 1915.1 56.8 1 R.YCVQLSQIQAQISALEEQLQQIR.A ORFP:YGL123W 2 2 12.2% 254 27450 10.4 U RPS2 SGDID:S0003091, Chr VII from 277621-278385 * bethti6f-02.2418.2418.2 5.0262 0.488 1740.25 1741.081 7833.4 1 1666.5 71.4 1 K.ITTIEEIFLHSLPVK.E * bethti6f-02.1430.1430.2 2.7698 0.4308 1730.07 1730.921 6722.4 1 377.0 46.7 1 R.GYWGTNLGQPHSLATK.T ORFP:YHR203C 2 2 11.1% 261 29410 10.1 U RPS4B SGDID:S0001246, Chr VIII from 504472-504485,504755-505526, reverse complement ORFP:YJR145C 2 2 11.1% 261 29410 10.1 U RPS4A SGDID:S0003906, Chr X from 701721-701734,701991-702762, reverse complement bethti6f-02.2246.2246.2 2.5779 0.1587 1187.71 1187.468 5474.8 1 763.5 83.3 1 R.ESLPLIVFLR.N bethti6f-02.1752.1752.2 3.1712 0.3299 2117.89 2117.496 8938.5 1 595.6 44.4 1 R.LNNVFVIGEQGKPYISLPK.G ORFP:YHL015W 2 2 10.7% 121 13907 9.5 U RPS20 SGDID:S0001007, Chr VIII from 75408-75773 * bethti6f-02.1498.1498.2 3.4987 0.4222 1544.9 1544.834 7582.7 1 1334.0 75.0 1 K.RYIDLEAPVQIVK.R * bethti6f-02.1468.1468.2 3.2407 0.0928 1388.54 1388.647 5818.7 1 1272.6 81.8 1 R.YIDLEAPVQIVK.R KERATIN22 4 4 9.0% 645 65865 8.0 U no description * bethti6f-02.1298.1298.2 5.0589 0.5677 1321.52 1321.354 6544.0 1 1913.8 83.3 1 R.HGGGGGGFGGGGFGSR.S * bethti6f-02.1603.1603.2 5.3149 0.3614 2399.62 2400.445 9177.3 1 2453.3 51.7 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethti6f-02.1604.1604.3 3.7312 0.3045 2399.73 2400.445 8812.6 1 1467.7 31.9 1 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F bethti6f-02.1986.1986.1 3.1142 0.2672 1329.65 1330.521 6336.5 1 743.0 72.7 1 R.NLDLDSIIAEVK.A ORFP:YLR441C 2 2 7.5% 255 28743 10.0 U RPS1A SGDID:S0004433, Chr XII from 1018136-1018903, reverse complement ORFP:YML063W 2 2 7.5% 255 28812 10.0 U RPS1B SGDID:S0004528, Chr XIII from 146482-147249 bethti6f-02.1648.1648.2 3.0634 0.1633 939.57 939.145 3697.3 2 893.3 92.9 1 R.IFAIAFTR.K bethti6f-02.1639.1639.2 2.8796 0.2788 1352.36 1352.579 5333.3 1 952.2 85.0 1 K.DIFPLQNIHVR.K Proteins Peptide IDs Copies Unfiltered 4417 7625 12650 Redundant 27 78 118 Nonredundant 19 78 118 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0