DTASelect v1.9 /wfs/bfd/3/scott/beth/tii2d /wfs/dbase/nci/yeastorf4.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YKL193C 14 57 46.2% 338 38887 5.5 U SDS22 SGDID:S0001676, Chr XI from 78867-79883, reverse complement * bethtii2d-05.2643.2643.3 4.7655 0.4275 4189.84 4190.604 8249.5 1 791.2 22.9 2 R.HKIEVVDDTNPDFITADSELTQDLPDDVEVIDLVHLK.I * bethtii2d-01.2438.2438.3 6.67 0.5553 3925.51 3925.289 5790.6 1 944.7 27.9 1 K.IEVVDDTNPDFITADSELTQDLPDDVEVIDLVHLK.I * bethtii2d-06.2042.2042.2 4.063 0.457 1950.06 1951.184 6554.2 1 1428.8 71.9 6 R.QNLIESISEVEVLPHDK.I * bethtii2d-02.1360.1360.2 3.6973 0.2915 1242.76 1242.371 4574.4 1 992.0 88.9 5 K.IVDLDFYDNK.I * bethtii2d-02.1341.1341.1 2.0715 0.2569 1029.22 1030.079 6670.3 27 396.5 57.1 1 V.DLDFYDNK.I * bethtii2d-01.2732.2732.3 6.481 0.473 2354.15 2355.607 8403.2 1 1606.8 42.1 9 K.NLENLTDLENLYFVQNSISK.I * bethtii2d-01.2760.2760.2 6.1962 0.5807 2354.16 2355.607 7511.6 1 1596.7 60.5 18 K.NLENLTDLENLYFVQNSISK.I * bethtii2d-06.1410.1410.1 1.8641 0.0847 947.28 948.197 3858.6 11 328.3 71.4 1 R.LINLHPLK.N * bethtii2d-06.1415.1415.2 3.0917 0.1489 947.99 948.197 3917.8 4 702.4 92.9 1 R.LINLHPLK.N * bethtii2d-01.1102.1102.1 2.5416 0.2031 902.15 903.067 5532.9 18 405.9 71.4 1 K.ILSIQSNK.L * bethtii2d-01.1071.1071.2 2.8892 0.1132 903.09 903.067 3242.6 6 463.7 85.7 1 K.ILSIQSNK.L * bethtii2d-06.2758.2758.3 5.2846 0.4792 2789.66 2792.158 10783.7 1 1313.5 33.0 7 K.KIENLEELTNLEELYLSHNFITK.I * bethtii2d-02.2152.2152.2 4.8658 0.5269 1865.65 1867.023 6451.4 1 2193.8 81.2 3 K.IDQSFESLGENLSALSR.L * bethtii2d-02.1727.1727.2 3.9029 0.3947 1875.73 1875.129 8586.1 1 1229.8 66.7 1 R.LETIYLEGNPIQLENK.T ORFP:YER133W 9 31 38.1% 312 35907 5.5 U GLC7 SGDID:S0000935, Chr V from 432491-432667,433193-433954 * bethtii2d-01.0242.0242.2 3.8344 0.5098 1798.99 1799.935 6679.1 1 775.4 60.0 1 R.GSKPGQQVDLEENEIR.Y * bethtii2d-01.2612.2612.2 3.0644 0.2269 1364.98 1364.668 4581.6 1 416.9 63.6 3 K.QPILLELEAPIK.I * bethtii2d-01.3065.3065.2 3.9974 0.5011 2597.64 2599.858 4299.7 1 553.6 47.6 1 R.LFEYGGFPPESNYLFLGDYVDR.G * bethtii2d-01.2964.2964.2 3.8711 0.2751 1551.88 1552.818 5480.2 1 812.5 75.0 1 K.QSLETICLLLAYK.I *2 bethtii2d-06.1942.1942.2 2.6804 0.0831 1440.03 1440.728 3787.5 1 640.6 75.0 2 K.IKYPENFFILR.G *2 bethtii2d-01.2717.2717.2 3.3893 0.3183 1198.24 1199.395 5788.6 1 1071.4 93.8 5 K.YPENFFILR.G * bethtii2d-01.3045.3045.2 4.8023 0.476 2128.22 2129.347 5548.6 1 1193.1 67.6 1 K.TFTDCFNCLPIAAIIDEK.I * bethtii2d-01.1980.1980.2 3.6291 0.5129 1394.9 1395.558 5767.5 1 775.4 66.7 10 R.GVSFTFGPDVVNR.F * bethtii2d-06.1547.1547.2 3.9931 0.5885 1656.2 1656.792 9316.2 1 2357.5 80.8 7 R.AHQVVEDGYEFFSK.R ORFP:YOR096W 5 6 34.7% 190 21622 9.8 U RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767 * bethtii2d-01.3133.3133.3 4.0416 0.351 3085.02 3085.478 9653.4 1 807.5 26.9 1 K.ILSQAPTELELQVAQAFVELENSSPELK.A * bethtii2d-06.2243.2243.2 3.0496 0.2935 1667.17 1668.035 3456.8 1 372.0 56.7 1 K.ALAIFVPVPSLAGFHK.V bethtii2d-06.1495.1495.1 1.9626 0.1934 984.19 985.174 4037.9 1 399.3 78.6 1 R.HVIFLAER.R bethtii2d-06.1502.1502.2 2.886 0.3502 984.37 985.174 3193.0 1 649.3 92.9 1 R.HVIFLAER.R * bethtii2d-01.2624.2624.2 4.1148 0.438 1572.42 1573.87 4754.7 2 703.6 65.4 2 K.ILEDLVFPTEIVGK.R ORFP:YFR003C 4 15 32.9% 155 18187 6.1 U YFR003C SGDID:S0001899, Chr VI from 152651-153118, reverse complement * bethtii2d-01.2450.2450.2 3.7805 0.3753 1540.07 1540.8 4747.1 1 877.4 76.9 9 R.TVSVEEVPAVLQLR.A * bethtii2d-02.0856.0856.2 3.28 0.34 1635.09 1635.745 5606.5 1 681.8 66.7 2 R.WEENVIDNENMNK.K * bethtii2d-02.0483.0483.1 1.888 0.1306 908.34 908.943 3876.1 19 357.6 75.0 1 K.DLDFNER.R * bethtii2d-02.1095.1095.2 3.4982 0.4821 2081.65 2083.175 6095.1 1 900.1 62.5 3 R.SYSPNAYEIQPDYSEYR.R ORFP:YBL087C 3 7 31.4% 137 14473 10.3 U RPL23A SGDID:S0000183, Chr II from 59815-59856,60361-60732, reverse complement ORFP:YER117W 3 7 31.4% 137 14473 10.3 U RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649 bethtii2d-01.2640.2640.2 4.3754 0.5186 2016.19 2017.274 6706.5 1 782.7 52.6 4 R.ISLGLPVGAIMNCADNSGAR.N bethtii2d-01.2080.2080.2 2.5101 0.1304 933.25 934.167 3510.3 4 459.1 85.7 1 R.NLYIIAVK.G bethtii2d-01.2702.2702.2 4.4364 0.5189 1503.35 1504.843 5288.3 1 1802.3 85.7 2 R.LPAASLGDMVMATVK.K ORFP:YCR031C 3 5 28.5% 137 14537 10.7 U RPS14A SGDID:S0000627, Chr III from 177492-177498,177806-178212, reverse complement ORFP:YJL191W 3 5 28.3% 138 14650 10.5 U RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610 mth.2848.2848.3 3.7593 0.275 3087.13 3089.391 9371.1 10 371.1 19.4 2 R.DNSQVFGVARIYASFNDTFVHVTDLSGK.E bethtii2d-01.2892.2892.2 2.5847 0.2652 2014.12 2015.23 7602.2 7 249.9 38.2 1 R.IYASFNDTFVHVTDLSGK.E bethtii2d-05.0594.0594.2 3.313 0.3977 1024.38 1025.153 6536.1 1 937.1 80.0 2 K.TPGPGGQAALR.A ORFP:YBR031W 4 9 22.7% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 4 9 22.7% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii2d-05.2835.2835.2 2.6343 0.4196 1821.34 1821.127 9822.8 1 1045.8 52.8 1 R.YATASAIAATAVASLVLAR.G bethtii2d-06.2187.2187.2 4.7194 0.4652 2612.47 2612.992 8971.0 1 1026.7 42.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii2d-05.1462.1462.2 3.092 0.4327 1846.15 1847.078 6849.0 1 679.5 53.1 3 K.VGYTLPSHIISTSDVTR.I bethtii2d-05.1363.1363.2 2.9658 0.4385 2112.77 2113.379 8638.7 1 596.0 42.1 4 R.IINSSEIQSAIRPAGQATQK.R ORFP:YGR214W 5 5 18.7% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920577-920666,921122-921790 ORFP:YLR048W 5 5 18.7% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii2d-01.3010.3010.3 4.7958 0.4983 2536.33 2536.847 8278.4 1 1206.8 33.7 1 L.PATFDLTPEDAQLLLAANTHLGAR.N bethtii2d-01.3020.3020.2 3.3856 0.2274 2268.62 2267.547 9172.9 1 475.4 37.5 1 T.FDLTPEDAQLLLAANTHLGAR.N bethtii2d-06.1259.1259.1 2.8639 0.3095 1269.27 1270.434 4878.1 1 302.9 58.3 1 K.FAAHTGATPIAGR.F bethtii2d-06.1258.1258.2 3.3674 0.4378 1269.76 1270.434 5130.0 1 968.7 83.3 1 K.FAAHTGATPIAGR.F bethtii2d-01.2252.2252.2 3.1147 0.3432 1155.86 1156.283 8506.1 1 1775.2 88.9 1 T.PGSFTNYITR.S ORFP:YJR123W 2 4 18.2% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651595-652272 * bethtii2d-06.3458.3458.3 5.3059 0.3903 3057.29 3058.462 9715.7 1 1081.4 29.6 3 K.HTLDIINVLTDQNPIQVVVDAITNTGPR.E * bethtii2d-02.1772.1772.2 3.0942 0.4206 1339.94 1340.609 7916.8 1 1398.8 75.0 1 R.VNQAIALLTIGAR.E ORFP:YJL177W 2 3 15.8% 184 20551 10.9 U RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654 ORFP:YKL180W 2 3 15.8% 184 20549 10.9 U RPL17A SGDID:S0001663, Chr XI from 109270-109578,109885-110130 bethtii2d-01.2008.2008.2 5.2684 0.4665 1646.05 1645.856 7801.6 1 2233.3 80.0 2 K.FVQGLLQNAAANAEAK.G bethtii2d-06.1331.1331.2 3.1507 0.3592 1495.61 1497.737 4085.8 1 507.7 75.0 1 K.LYVSHIQVNQAPK.Q NRL_1MCOL 2 5 15.7% 216 22815 6.3 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain L... * bethtii2d-01.2121.2121.2 2.9993 0.4001 2043.98 2044.269 3815.7 1 222.7 41.7 2 K.ANPTVTLFPPSSEELQANK.A * bethtii2d-01.2232.2232.2 3.5357 0.4106 1745.22 1744.941 6878.4 1 922.8 64.3 3 K.YAASSYLSLTPEQWK.S ORFP:YGR192C 3 4 14.5% 332 35747 7.0 U TDH3 SGDID:S0003424, Chr VII from 882814-883812, reverse complement * bethtii2d-06.1214.1214.2 4.1055 0.4832 1883.03 1884.056 9301.1 1 1310.0 59.4 1 R.YAGEVSHDDKHIIVDGK.K bethtii2d-01.1422.1422.2 2.7242 0.3629 1821.41 1821.013 7409.6 1 418.7 46.9 1 K.IVSNASCTTNCLAPLAK.V bethtii2d-02.1663.1663.2 3.4128 0.3897 1471.14 1471.734 9209.8 1 1559.5 69.2 2 R.VPTVDVSVVDLTVK.L KERATIN02 6 12 14.0% 622 61987 5.2 U no description * bethtii2d-01.0907.0907.2 3.7395 0.4587 1233.05 1233.283 5499.5 1 1071.5 70.0 5 T.SGGGGGGGLGSGGSIR.S * bethtii2d-01.2188.2188.3 3.6683 0.3747 2705.55 2706.761 8496.5 2 425.3 21.0 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii2d-01.1866.1866.2 4.4235 0.5893 2023.9 2024.07 10164.4 1 1348.3 50.0 1 Y.SYGGGSGGGFSASSLGGGFGGGSR.G * bethtii2d-02.0600.0600.2 2.8434 0.381 951.73 952.015 4968.2 1 882.5 75.0 1 S.SLGGGFGGGSR.G * bethtii2d-06.1804.1804.2 5.7447 0.4898 1837.99 1839.056 9752.0 1 2795.0 76.7 2 R.HGVQELEIELQSQLSK.K * bethtii2d-01.0244.0244.2 3.5179 0.412 1792.11 1792.732 8628.4 1 575.3 36.4 2 R.GGSGGSYGGGGSGGGYGGGSGSR.G ORFP:YLL045C 3 3 13.3% 256 28112 10.0 U RPL8B SGDID:S0003968, Chr XII from 47858-48628, reverse complement bethtii2d-06.1187.1187.1 1.808 0.1312 994.17 995.123 4169.7 1 256.2 62.5 1 K.NPLTHSTPK.N bethtii2d-01.1550.1550.2 3.0222 0.197 1159.18 1159.33 7488.1 1 1155.8 80.0 1 K.NFGIGQAVQPK.R bethtii2d-01.2362.2362.2 3.2908 0.4002 1649.04 1649.887 6649.8 1 809.6 65.4 1 K.VPPTIAQFQYTLDR.N ORFP:YNL096C 3 3 12.6% 190 21634 9.9 U RPS7B SGDID:S0005040, Chr XIV from 443395-443538,443884-444312, reverse complement * bethtii2d-06.2278.2278.2 3.3033 0.3521 1725.28 1726.115 3346.6 1 730.1 73.3 1 K.ALVLFVPVPALSAYHK.V bethtii2d-06.1495.1495.1 1.9626 0.1934 984.19 985.174 4037.9 1 399.3 78.6 1 R.HVIFLAER.R bethtii2d-06.1502.1502.2 2.886 0.3502 984.37 985.174 3193.0 1 649.3 92.9 1 R.HVIFLAER.R NRL_1MCOH 4 10 12.1% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii2d-02.1099.1099.2 3.144 0.2512 1187.05 1187.381 4100.7 1 819.4 72.7 5 K.GPSVFPLAPSSK.S * bethtii2d-01.1449.1449.2 3.3957 0.4186 1322.16 1322.467 10356.3 1 1199.7 61.5 3 K.STSGGTAALGCLVK.D * bethtii2d-06.2242.2242.2 4.2602 0.3462 1808.46 1809.119 9093.7 1 1130.2 60.0 1 R.VVSVLTVLHQNWLDGK.E * bethtii2d-01.1824.1824.2 2.7599 0.1562 1161.71 1162.338 5333.1 1 793.0 77.8 1 K.NQVSLTCLVK.G KERATIN03 6 12 10.1% 593 59519 5.2 U no description * bethtii2d-06.1444.1444.2 3.3792 0.3375 2099.31 2098.193 8517.1 1 486.5 36.4 1 I.SSSKGSLGGGFSSGGFSGGSFSR.G * bethtii2d-01.1966.1966.2 2.8877 0.3459 1711.3 1708.784 8997.4 1 770.9 44.4 2 K.GSLGGGFSSGGFSGGSFSR.G * bethtii2d-04.2564.2564.2 2.8607 0.2537 2369.08 2368.652 8697.0 1 935.6 47.5 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii2d-01.2637.2637.3 5.7079 0.3045 2370.21 2368.652 9268.9 3 1529.1 37.5 5 K.NQILNLTTDNANILLQIDNAR.L * bethtii2d-05.2478.2478.2 4.214 0.425 1796.65 1798.09 10322.2 1 2287.1 73.3 2 R.NVQALEIELQSQLALK.Q * bethtii2d-01.2841.2841.3 4.0743 0.219 1798.49 1798.09 10080.7 2 1401.5 43.3 1 R.NVQALEIELQSQLALK.Q KERATIN22 4 12 9.0% 645 65865 8.0 U no description * bethtii2d-01.2161.2161.2 4.7302 0.6024 1840.36 1840.005 10182.6 1 1680.8 54.8 2 K.SISISVAGGGGGFGAAGGFGGR.G * bethtii2d-02.2008.2008.3 4.3527 0.4277 2831.35 2832.881 10978.1 1 1934.9 29.3 1 R.GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii2d-02.1631.1631.3 5.4146 0.4951 2399.34 2400.445 8773.4 1 4038.0 45.7 4 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii2d-02.1660.1660.2 4.6224 0.3794 2402.21 2400.445 9340.0 1 2189.1 50.0 5 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F KERATIN13 3 3 8.9% 643 65494 6.6 U no description * bethtii2d-06.2492.2492.2 3.2899 0.4255 1994.03 1995.202 4149.0 1 708.1 66.7 1 R.THNLEPYFESFINNLR.R * bethtii2d-06.0286.0286.2 2.7403 0.1234 1201.23 1202.396 6338.7 19 786.1 66.7 1 R.LRSEIDNVKK.Q * bethtii2d-05.0659.0659.2 4.8327 0.3348 2383.95 2385.298 7736.0 1 699.7 36.7 1 R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G ORFP:YGR034W 2 2 7.8% 129 14609 10.3 U RPL26B SGDID:S0003266, Chr VII from 555930-555954,556309-556673 ORFP:YLR344W 2 2 7.9% 127 14234 10.6 U RPL26A SGDID:S0004336, Chr XII from 819312-819330,819778-820142 bethtii2d-06.1398.1398.2 3.1163 0.3616 1084.14 1084.348 5362.7 1 959.6 88.9 1 R.RVLLSAPLSK.E bethtii2d-01.1602.1602.1 1.8927 0.1366 927.45 928.16 5538.5 2 343.8 62.5 1 R.VLLSAPLSK.E TRYPSIN 2 2 6.1% 229 23993 7.9 U no description * bethtii2d-01.2128.2128.2 3.8528 0.4122 1469.58 1469.64 6726.5 1 1355.6 73.1 1 G.GSLINSQWVVSAAH.C * bethtii2d-01.1902.1902.2 3.2999 0.4754 1324.43 1325.51 8182.8 1 1557.8 81.8 1 S.LINSQWVVSAAH.C ORFP:Q0050 2 3 5.8% 834 96079 9.9 U AI1 SGDID:S0007261, Chr Mito from 13818-16322 * bethtii2d-06.0199.0199.3 3.5803 0.124 3425.64 3426.063 7146.0 14 251.5 19.6 1 N.EENMNNNLLSIMKNVDMLMLAYNRIKSKP.G * bethtii2d-02.2023.2023.2 3.3004 0.1016 2253.51 2255.52 7411.8 1 964.5 52.8 2 L.GSKNDCKMIKRDLNNFLNS.L ORFP:YOR204W 2 2 5.8% 604 65553 7.8 U DED1 SGDID:S0005730, Chr XV from 722911-724725 * bethtii2d-01.2430.2430.2 2.6051 0.248 1371.23 1372.608 7560.9 4 475.2 53.6 1 R.SGAATLLVATAVAAR.G * bethtii2d-01.2342.2342.2 3.3128 0.4422 2055.94 2056.24 9480.5 1 440.7 36.8 1 R.AGNTGLATAFFNSENSNIVK.G ORFP:YDR161W 1 11 5.2% 387 42943 4.3 U YDR161W SGDID:S0002568, Chr IV from 779036-780199 * bethtii2d-01.1880.1880.2 3.4309 0.2252 2451.2 2452.769 7498.1 1 471.5 39.5 11 L.EIFKLNNPEVSLRPENIYEF.N ORFP:YBR118W 2 4 5.0% 458 50033 9.0 U TEF2 SGDID:S0000322, Chr II from 477628-479004 ORFP:YPR080W 2 4 5.0% 458 50033 9.0 U TEF1 SGDID:S0006284, Chr XVI from 700590-701966 bethtii2d-05.0746.0746.2 3.1229 0.3928 1356.15 1356.524 7021.2 1 913.3 68.2 2 K.YQVTVIDAPGHR.D bethtii2d-02.0845.0845.2 3.1125 0.2677 1025.39 1026.224 5123.7 1 1020.2 85.0 2 K.IGGIGTVPVGR.V gi|7463016|pir||S77957 2 2 4.1% 269 27961 6.7 U lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes * bethtii2d-04.0732.0732.1 2.4188 0.424 1051.17 1052.175 5738.3 1 483.0 60.0 1 R.VLGQLHGGPSS.C * bethtii2d-04.0724.0724.2 2.6591 0.263 1051.77 1052.175 4274.7 1 484.4 70.0 1 R.VLGQLHGGPSS.C ORFP:YGL023C 2 2 3.8% 635 70617 7.8 U PIB2 SGDID:S0002991, Chr VII from 450200-452107, reverse complement * bethtii2d-01.3004.3004.2 2.9477 0.1065 2646.9 2648.883 7901.7 2 441.7 32.6 1 K.VSETNITNDDLLNATLSSYYKKAS.N * bethtii2d-06.1982.1982.2 2.8274 0.0904 2231.17 2232.452 9146.3 7 416.9 36.8 1 T.NITNDDLLNATLSSYYKKAS.N ORFP:YDR422C 2 2 2.2% 863 96259 6.6 U SIP1 SGDID:S0002830, Chr IV from 1315314-1317905, reverse complement * bethtii2d-05.1990.1990.2 3.1022 0.1558 2210.37 2212.387 8496.9 2 728.3 44.4 1 H.DAFNKDRQGSITSQLFNNR.K * bethtii2d-05.3674.3674.3 3.5468 0.0961 2211.56 2212.387 10466.5 74 700.4 31.9 1 H.DAFNKDRQGSITSQLFNNR.K Proteins Peptide IDs Copies Unfiltered 4941 11007 20717 Redundant 35 102 236 Nonredundant 28 100 234 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0