DTASelect v1.9 /wfs/bfd/3/scott/beth/tii2c_2 /wfs/dbase/nci/yeastorf3.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YDR531W 24 325 61.9% 367 40903 6.4 U YDR531W SGDID:S0002939, Chr IV from 1498235-1499338 * bethtii2c_2-06.2304.2304.3 6.2057 0.5328 3107.79 3108.352 9599.3 1 2096.8 36.1 16 R.ITQEISYNCDYGDNTFNLAIDIGGTLAK.V * bethtii2c_2-06.1244.1244.2 2.7942 0.3737 1155.26 1156.33 5691.8 1 1229.4 94.4 1 K.VVFSPIHSNR.L * bethtii2c_2-06.1497.1497.2 3.2591 0.3523 1631.32 1631.925 7594.8 1 753.8 62.5 1 R.LMFYTIETEKIDK.F * bethtii2c_2-06.1258.1258.1 3.7487 0.3975 1303.08 1304.55 5685.7 1 815.6 66.7 3 R.MTHIIATGGGAFK.F * bethtii2c_2-06.1268.1268.2 4.0782 0.3366 1306.84 1304.55 5953.3 1 2124.4 91.7 3 R.MTHIIATGGGAFK.F * bethtii2c_2-01.3826.3826.2 3.2889 0.4464 1690.01 1690.936 6918.5 1 1355.6 75.0 3 K.FYDLLYENFPQIK.G * bethtii2c_2-06.1377.1377.2 4.1615 0.4518 2177.38 2178.276 5971.9 1 977.6 64.7 1 F.IHEIPDEVFTYNDQDGER.I * bethtii2c_2-02.0150.0150.1 2.1286 0.3102 1236.24 1237.411 3627.1 1 462.7 68.2 1 R.IIPTSSGTMDSK.A * bethtii2c_2-06.2264.2264.3 4.2538 0.408 1920.84 1921.331 7463.0 1 1398.7 42.6 1 K.AIYPYLLVNIGSGVSILK.V * bethtii2c_2-06.2276.2276.2 5.0543 0.5365 1921.17 1921.331 8444.7 1 2702.6 76.5 54 K.AIYPYLLVNIGSGVSILK.V * bethtii2c_2-06.1642.1642.1 2.7722 0.1233 1312.26 1313.624 6836.2 8 407.6 54.2 1 Y.LLVNIGSGVSILK.V * bethtii2c_2-06.1644.1644.2 4.1739 0.4086 1312.47 1313.624 5212.6 1 1076.6 79.2 1 Y.LLVNIGSGVSILK.V * bethtii2c_2-02.0900.0900.2 3.0393 0.4004 1086.33 1087.305 5155.3 1 1037.2 85.0 1 L.VNIGSGVSILK.V * bethtii2c_2-02.0296.0296.2 2.581 0.3445 1063.62 1064.143 4276.1 1 491.3 81.2 1 K.VTEPNNFSR.V * bethtii2c_2-02.0470.0470.2 2.904 0.1788 954.32 955.056 4274.2 2 789.9 83.3 4 K.SSAIASSFGK.V * bethtii2c_2-03.0593.0593.2 3.3363 0.3246 1192.71 1193.299 5119.0 1 966.7 83.3 27 K.LYSSHESIEK.N * bethtii2c_2-01.0390.0390.1 1.911 0.1753 837.58 838.957 4015.3 7 242.3 75.0 1 K.NNGQMFK.N *2 bethtii2c_2-01.0055.0055.1 2.0953 0.1082 745.98 746.805 2980.1 6 259.9 80.0 2 K.NPDICK.S * bethtii2c_2-06.2208.2208.3 4.9741 0.4631 2064.12 2065.42 8257.4 1 1595.4 41.7 8 K.SLLFAISNNIGQIAYLQAK.I * bethtii2c_2-06.2216.2216.2 6.3726 0.5771 2064.21 2065.42 9455.6 1 3020.2 72.2 150 K.SLLFAISNNIGQIAYLQAK.I * bethtii2c_2-02.1068.1068.2 3.1214 0.4003 1603.26 1604.847 6771.7 1 831.5 60.7 2 F.AISNNIGQIAYLQAK.I * bethtii2c_2-02.1176.1176.2 4.8722 0.4395 1761.14 1760.947 6197.0 1 1654.7 82.1 40 K.INNIQNIYFGGSYTR.G * bethtii2c_2-02.0908.0908.2 3.0686 0.4024 1137.22 1138.268 5721.1 1 969.3 83.3 1 Y.AINFWSQGSK.Q * bethtii2c_2-06.1862.1862.2 4.1587 0.5037 1667.2 1667.88 7706.5 1 1751.7 73.3 2 K.HEGYLGAMGAFLSASR.H NRL_1MCOH 7 19 19.9% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii2c_2-03.0925.0925.2 2.8254 0.2288 1187.12 1187.381 4405.9 1 640.0 63.6 4 K.GPSVFPLAPSSK.S * bethtii2c_2-02.0761.0761.2 3.4993 0.32 1322.24 1322.467 8432.8 1 1109.2 65.4 1 K.STSGGTAALGCLVK.D * bethtii2c_2-06.1301.1301.2 3.3278 0.2347 2139.36 2139.333 5770.4 1 932.4 58.3 3 R.TPEVTCVVVDVSHEDPQVK.F * bethtii2c_2-06.1428.1428.2 3.2696 0.2152 1677.5 1677.859 8074.0 1 1277.9 69.2 1 K.FNWYVDGVQVHNAK.T * bethtii2c_2-06.2168.2168.2 4.1794 0.4262 1808.88 1809.119 7756.8 1 1168.9 60.0 7 R.VVSVLTVLHQNWLDGK.E * bethtii2c_2-02.0861.0861.1 2.1383 0.2438 1161.2 1162.338 4171.5 24 190.4 55.6 1 K.NQVSLTCLVK.G * bethtii2c_2-02.0888.0888.2 3.1573 0.2134 1161.3 1162.338 5330.6 1 1092.3 83.3 2 K.NQVSLTCLVK.G ORFP:YBR031W 4 5 19.6% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 4 5 19.6% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii2c_2-06.2240.2240.2 3.73 0.4348 1821.69 1821.127 10606.9 1 1042.6 50.0 2 R.YATASAIAATAVASLVLAR.G bethtii2c_2-06.1334.1334.2 3.5363 0.4327 1630.14 1630.885 5668.4 1 995.5 71.4 1 R.RGPLVVYAEDNGIVK.A bethtii2c_2-06.1388.1388.2 4.6118 0.4601 1846.25 1847.078 4061.6 1 849.5 68.8 1 K.VGYTLPSHIISTSDVTR.I bethtii2c_2-06.1296.1296.2 5.5685 0.5467 2112.19 2113.379 7502.5 1 1351.8 60.5 1 R.IINSSEIQSAIRPAGQATQK.R ORFP:YNL302C 2 3 18.8% 144 15891 9.6 U RPS19B SGDID:S0005246, Chr XIV from 61957-61976,62528-62942, reverse complement ORFP:YOL121C 2 3 18.8% 144 15917 9.6 U RPS19A SGDID:S0005481, Chr XV from 92025-92044,92435-92849, reverse complement bethtii2c_2-05.2662.2662.2 3.4123 0.4597 1929.22 1930.127 9260.2 1 919.5 53.1 1 R.DVAAQDFINAYASFLQR.Q bethtii2c_2-01.1627.1627.1 1.8286 0.2115 1117.9 1119.171 6691.4 4 460.0 61.1 2 R.IAAQTLEEDE.- ORFP:YGR192C 3 3 16.9% 332 35747 7.0 U TDH3 SGDID:S0003424, Chr VII from 882807-883805, reverse complement bethtii2c_2-02.0748.0748.2 3.2943 0.4337 1819.92 1821.013 6573.2 1 492.9 46.9 1 K.IVSNASCTTNCLAPLAK.V * bethtii2c_2-06.2442.2442.2 4.693 0.4017 2576.57 2576.924 9199.6 1 896.3 43.5 1 K.VINDAFGIEEGLMTTVHSLTATQK.T bethtii2c_2-02.0427.0427.2 2.6048 0.2015 1375.0 1375.522 4608.1 2 497.4 60.7 1 R.TASGNIIPSSTGAAK.A ORFP:YJL177W 2 3 15.8% 184 20551 10.9 U RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654 ORFP:YKL180W 2 3 15.8% 184 20549 10.9 U RPL17A SGDID:S0001663, Chr XI from 109271-109579,109886-110131 bethtii2c_2-02.1032.1032.2 4.493 0.4551 1644.97 1645.856 8957.2 1 2169.0 73.3 2 K.FVQGLLQNAAANAEAK.G bethtii2c_2-06.1238.1238.2 4.0773 0.4347 1497.56 1497.737 7239.6 1 1815.0 83.3 1 K.LYVSHIQVNQAPK.Q KERATIN02 4 4 13.7% 622 61987 5.2 U no description * bethtii2c_2-02.0412.0412.2 2.7123 0.3567 1232.65 1233.283 4711.9 1 758.0 66.7 1 T.SGGGGGGGLGSGGSIR.S * bethtii2c_2-02.0960.0960.2 3.2196 0.4805 2023.06 2024.07 9747.7 1 588.0 37.0 1 Y.SYGGGSGGGFSASSLGGGFGGGSR.G * bethtii2c_2-06.1816.1816.3 7.3973 0.551 3267.2 3266.413 9809.2 1 2208.4 34.8 1 K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E * bethtii2c_2-06.1722.1722.2 3.121 0.2533 1840.89 1839.056 7928.2 1 928.4 60.0 1 R.HGVQELEIELQSQLSK.K KERATIN03 5 5 13.3% 593 59519 5.2 U no description * bethtii2c_2-02.1080.1080.2 2.6129 0.2656 1708.02 1708.784 9191.1 1 603.8 44.4 1 K.GSLGGGFSSGGFSGGSFSR.G * bethtii2c_2-06.1922.1922.3 5.3077 0.3509 2368.07 2368.652 10229.9 1 2437.0 43.8 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii2c_2-05.2406.2406.2 2.6017 0.334 1797.86 1798.09 8681.9 1 949.9 60.0 1 R.NVQALEIELQSQLALK.Q * bethtii2c_2-05.2886.2886.2 4.3194 0.506 2746.35 2748.075 8414.7 1 1108.2 47.7 1 R.YCVQLSQIQAQISALEEQLQQIR.A * bethtii2c_2-05.2873.2873.3 3.7645 0.4079 2747.6 2748.075 4536.0 1 894.2 38.6 1 R.YCVQLSQIQAQISALEEQLQQIR.A ORFP:YBR189W 2 2 11.8% 195 22299 10.1 U RPS9B SGDID:S0000393, Chr II from 604466-604472,604886-605466 ORFP:YPL081W 2 2 11.7% 197 22443 10.0 U RPS9A SGDID:S0006002, Chr XVI from 404945-404951,405453-406039 bethtii2c_2-06.1384.1384.1 2.1247 0.2606 1062.27 1063.326 3899.5 3 425.0 68.8 1 K.KLDYVLALK.V bethtii2c_2-06.1404.1404.2 2.8689 0.2923 1473.04 1473.631 4846.1 1 616.0 61.5 1 K.HIDFAPTSPFGGAR.P ORFP:YBR118W 3 3 11.6% 458 50033 9.0 U TEF2 SGDID:S0000322, Chr II from 477629-479005 ORFP:YPR080W 3 3 11.6% 458 50033 9.0 U TEF1 SGDID:S0006284, Chr XVI from 700590-701966 bethtii2c_2-06.1765.1765.2 2.8429 0.2912 1996.55 1998.241 10313.2 4 413.8 35.3 1 K.TLLEAIDAIEQPSRPTDK.P bethtii2c_2-02.0728.0728.2 3.3131 0.3199 1026.08 1026.224 5208.3 1 1004.3 85.0 1 K.IGGIGTVPVGR.V bethtii2c_2-06.1597.1597.2 4.8809 0.4164 2431.2 2431.893 6334.5 1 1000.9 52.2 1 R.VETGVIKPGMVVTFAPAGVTTEVK.S ORFP:YOR096W 2 2 11.6% 190 21622 9.8 U RPS7A SGDID:S0005622, Chr XV from 505793-505936,506338-506766 bethtii2c_2-06.1369.1369.2 2.8766 0.2983 985.07 985.174 3024.8 1 616.4 92.9 1 R.HVIFLAER.R * bethtii2c_2-01.3788.3788.2 3.4484 0.3917 1572.14 1573.87 4763.3 1 656.2 65.4 1 K.ILEDLVFPTEIVGK.R ORFP:YAL005C 5 5 11.4% 642 69768 5.1 U SSA1 SGDID:S0000004, Chr I from 139501-141429, reverse complement * bethtii2c_2-02.0721.0721.2 2.9286 0.2656 1609.02 1608.766 8976.4 1 670.3 50.0 1 K.NQAAMNPSNTVFDAK.R bethtii2c_2-06.1373.1373.2 4.0839 0.5184 1728.26 1730.014 4181.1 1 890.5 75.0 1 K.LIDVDGKPQIQVEFK.G bethtii2c_2-06.1385.1385.2 4.7822 0.5217 1789.37 1789.082 5345.4 1 1203.4 71.9 1 R.IINEPTAAAIAYGLDKK.G bethtii2c_2-06.1649.1649.2 2.7622 0.2668 1526.84 1527.686 7014.5 1 519.8 63.6 1 R.ARFEELCADLFR.S bethtii2c_2-04.0901.0901.2 2.7015 0.1062 1459.4 1460.627 7437.5 1 911.5 61.5 1 K.SQVDEIVLVGGSTR.I ORFP:YLL024C 5 5 11.4% 639 69470 5.1 U SSA2 SGDID:S0003947, Chr XII from 95565-97484, reverse complement * bethtii2c_2-02.0813.0813.2 4.3759 0.4694 1593.23 1592.767 5887.1 1 1225.1 75.0 1 K.NQAAMNPANTVFDAK.R bethtii2c_2-06.1373.1373.2 4.0839 0.5184 1728.26 1730.014 4181.1 1 890.5 75.0 1 K.LIDVDGKPQIQVEFK.G bethtii2c_2-06.1385.1385.2 4.7822 0.5217 1789.37 1789.082 5345.4 1 1203.4 71.9 1 R.IINEPTAAAIAYGLDKK.G bethtii2c_2-06.1649.1649.2 2.7622 0.2668 1526.84 1527.686 7014.5 1 519.8 63.6 1 R.ARFEELCADLFR.S bethtii2c_2-04.0901.0901.2 2.7015 0.1062 1459.4 1460.627 7437.5 1 911.5 61.5 1 K.SQVDEIVLVGGSTR.I ORFP:YNL178W 2 2 9.2% 240 26503 9.4 U RPS3 SGDID:S0005122, Chr XIV from 302677-303399 * bethtii2c_2-06.1864.1864.2 4.2845 0.4981 2420.93 2422.659 9157.3 1 1017.1 47.6 1 K.FADGFLIHSGQPVNDFIDTATR.H * bethtii2c_2-06.1878.1878.3 3.7054 0.3316 2422.31 2422.659 8213.1 1 746.5 29.8 1 K.FADGFLIHSGQPVNDFIDTATR.H ORFP:YGR178C 2 5 5.4% 722 78782 6.9 U PBP1 SGDID:S0003410, Chr VII from 851042-853210, reverse complement * bethtii2c_2-06.1905.1905.2 3.8504 0.4498 2080.32 2081.371 7707.5 1 846.1 55.6 1 K.TLGETLLIHGEDVAELELK.N * bethtii2c_2-04.1641.1641.2 3.6432 0.4985 2181.09 2182.303 5816.9 1 1132.8 57.9 4 R.GIIIDDSGLDEEDLYSGVDR.R GR78_LYCES 2 2 3.9% 666 73235 5.2 U owl|P49118| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN... * bethtii2c_2-06.1385.1385.3 3.9596 0.2849 2683.49 2683.167 5345.4 1 850.7 33.0 1 G.VIAGLNVARIINEPTAAAIAYGLDKK.G bethtii2c_2-06.1385.1385.2 4.7822 0.5217 1789.37 1789.082 5345.4 1 1203.4 71.9 1 R.IINEPTAAAIAYGLDKK.G ORFP:YGL028C 2 3 3.1% 542 56447 4.5 U SCW11 SGDID:S0002996, Chr VII from 441277-442905, reverse complement * bethtii2c_2-01.3498.3498.1 1.8667 0.1245 1164.14 1165.24 4137.3 160 107.6 40.0 1 G.VDSIDDSVTTL.I *2 bethtii2c_2-01.0055.0055.1 2.0953 0.1082 745.98 746.805 2980.1 6 259.9 80.0 2 N.NPDLCK.K ORFP:YGL008C 2 2 2.7% 918 99619 5.1 U PMA1 SGDID:S0002976, Chr VII from 479906-482662, reverse complement ORFP:YPL036W 2 2 2.6% 947 102172 5.0 U PMA2 SGDID:S0005957, Chr XVI from 482839-485682 bethtii2c_2-06.1536.1536.2 3.5572 0.4161 1414.63 1415.632 5161.4 1 928.0 77.3 1 K.VLEFHPFDPVSK.K bethtii2c_2-02.0881.0881.2 3.3089 0.296 1450.67 1449.607 4762.1 1 522.8 70.8 1 R.QLGLGTNIYNAER.L ORFP:YDL155W 2 2 2.6% 427 49476 5.3 U CLB3 SGDID:S0002314, Chr IV from 176774-178057 * bethtii2c_2-06.1224.1224.1 1.9299 0.1223 1319.17 1321.473 2109.6 1 108.2 60.0 1 A.ERTILNGLEFE.L * bethtii2c_2-06.1221.1221.2 2.7322 0.1865 1319.98 1321.473 5593.4 7 472.0 65.0 1 A.ERTILNGLEFE.L Proteins Peptide IDs Copies Unfiltered 4752 8584 16340 Redundant 25 80 400 Nonredundant 19 74 393 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0