The stretch of C-terminal acidic amino acids of translational release factor eRF1 is a primary binding site for eRF3 of fission yeast

RNA. 1998 Aug;4(8):958-72. doi: 10.1017/s1355838298971874.

Abstract

Translation termination in eukaryotes requires a codon-specific (class-I) release factor, eRF1, and a GTP/GDP-dependent (class-II) release factor, eRF3. The model of "molecular mimicry between release factors and tRNA" predicts that eRF1 mimics tRNA to read the stop codon and that eRF3 mimics elongation factor EF-Tu to bring eRF1 to the A site of the ribosome for termination of protein synthesis. In this study, we set up three systems, in vitro affinity binding, a yeast two-hybrid system, and in vitro competition assay, to determine the eRF3-binding site of eRF1 using the fission yeast Schizosaccharomyces pombe proteins and creating systematic deletions in eRF1. The in vitro affinity binding experiments demonstrated that the predicted tRNA-mimicry truncation of eRF1 (Sup45) forms a stable complex with eRF3 (Sup35). All three test systems revealed that the most critical binding site is located at the C-terminal region of eRF1, which is conserved among eukaryotic eRF1s and rich in acidic amino acids. To our surprise, however, the C-terminal deletion eRF1 seems to be sufficient for cell viability in spite of the severe defect in eRF3 binding when expressed in a temperature-sensitive sup45 mutant of the budding yeast, Saccharomyces cerevisiae. These results cannot be accounted for by the simple "eRF3-EF-Tu mimicry" model, but may provide new insight into the eRF3 function for translation termination in eukaryotes.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Binding Sites
  • Binding, Competitive
  • Cloning, Molecular
  • DNA Mutational Analysis
  • Genes, Fungal
  • Genetic Complementation Test
  • Models, Molecular
  • Molecular Mimicry
  • Molecular Sequence Data
  • Peptide Chain Termination, Translational*
  • Peptide Elongation Factor Tu / metabolism
  • Peptide Fragments / metabolism
  • Peptide Termination Factors / genetics
  • Peptide Termination Factors / metabolism*
  • Protein Binding
  • RNA, Transfer / metabolism
  • Schizosaccharomyces / genetics*
  • Schizosaccharomyces / growth & development
  • Sequence Analysis, DNA
  • Sequence Deletion
  • Sequence Homology, Amino Acid

Substances

  • Peptide Fragments
  • Peptide Termination Factors
  • peptide-chain-release factor 3
  • RNA, Transfer
  • Peptide Elongation Factor Tu

Associated data

  • GENBANK/D79214