Determinants of Rbp1p localization in specific cytoplasmic mRNA-processing foci, P-bodies

J Biol Chem. 2006 Sep 29;281(39):29379-90. doi: 10.1074/jbc.M601573200. Epub 2006 Aug 2.

Abstract

Rbp1p, a yeast RNA-binding protein, decreases the level of mitochondrial porin mRNA by enhancing its degradation, but the intracellular location of the Rbp1p-mediated degradation complex remains unknown. We show here that Rbp1p in xrn1Delta mutant yeast localizes in specific cytoplasmic foci that are known as P-bodies. The N-terminal and RNA recognition motif (RRM) 1 domains of Rbp1p are necessary but not sufficient for its localization in P bodies. Rbp1p forms oligomers through its C-terminal domain in vivo; N-terminal-delete, or RRM1-mutated Rbp1p can be more efficiently recruited to P-bodies in an xrn1Delta strain, expressing a full-length Rbp1p. Although POR1 mRNA is localized to P bodies in an xrn1Delta strain, this localization does not depend on Rbp1p. Decapping activator Dhh1p directly interacts with Rbp1p. However, the recruitment of Rbp1p to P-bodies does not require Dhh1p or Ccr4p. In wild-type cells, Rbp1p can localize to P-bodies under glucose deprivation or treatment with KCl. In addition, Rbp1p-mediated porin mRNA decay is elicited by Xrn1p, a 5 ' to 3 ' exonuclease. These results provide new insight into the mechanism of Rbp1p function.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytoplasm / metabolism*
  • DEAD-box RNA Helicases / metabolism
  • Gene Deletion
  • Genotype
  • Models, Genetic
  • Mutation
  • Plasmids / metabolism
  • Porins / metabolism
  • Protein Binding
  • Protein Structure, Tertiary
  • RNA / chemistry
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / chemistry*
  • RNA-Binding Proteins / physiology
  • Receptors, CCR4
  • Receptors, Chemokine / metabolism
  • Saccharomyces cerevisiae Proteins / chemistry*
  • Saccharomyces cerevisiae Proteins / metabolism
  • Saccharomyces cerevisiae Proteins / physiology

Substances

  • NGR1 protein, S cerevisiae
  • Porins
  • RNA, Messenger
  • RNA-Binding Proteins
  • Receptors, CCR4
  • Receptors, Chemokine
  • Saccharomyces cerevisiae Proteins
  • RNA
  • DHH1 protein, S cerevisiae
  • DEAD-box RNA Helicases