Effect of amino acid substitutions in the rad50 ATP binding domain on DNA double strand break repair in yeast

J Biol Chem. 2005 Jan 28;280(4):2620-7. doi: 10.1074/jbc.M410192200. Epub 2004 Nov 16.

Abstract

The Saccharomyces cerevisiae Rad50-Mre11-Xrs2 complex plays a central role in the cellular response to DNA double strand breaks. Rad50 has a globular ATPase head domain with a long coiled-coil tail. DNA binding by Rad50 is ATP-dependent and the Rad50-Mre11-Xrs2 complex possesses DNA unwinding and endonuclease activities that are regulated by ATP. Here we have examined the role of the Rad50 Walker type A ATP binding motif in DNA double strand break repair by a combination of genetic and biochemical approaches. Replacement of the conserved lysine residue within the Walker A motif with alanine, glutamate, or arginine results in the same DNA damage sensitivity and homologous recombination defect as the rad50 deletion mutation. The Walker A mutations also cause a deficiency in non-homologous end-joining. As expected, complexes containing the rad50 Walker A mutant proteins are defective in ATPase, ATP-dependent DNA unwinding, and ATP-stimulated endonuclease activities. Although the DNA end-bridging activity of the Rad50-Mre11-Xrs2 complex is ATP-independent, the end-bridging activity of complexes containing the rad50 Walker A mutant proteins is salt-sensitive. These results provide a molecular explanation for the observed in vivo defects of the rad50 Walker mutant strains and reveal a novel ATP-independent function for Rad50 in DNA end-bridging.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Triphosphatases / chemistry
  • Adenosine Triphosphate / chemistry
  • Alanine / chemistry
  • Amino Acid Motifs
  • Arginine / chemistry
  • DNA / chemistry
  • DNA Damage*
  • DNA Repair*
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / physiology*
  • Dose-Response Relationship, Radiation
  • Endonucleases / metabolism
  • Gamma Rays
  • Genetic Complementation Test
  • Glutamic Acid / chemistry
  • Lysine / chemistry
  • Mutation*
  • Plasmids / metabolism
  • Protein Binding
  • Protein Structure, Tertiary
  • Recombination, Genetic
  • Saccharomyces cerevisiae / physiology*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Saccharomyces cerevisiae Proteins / physiology*
  • Time Factors

Substances

  • DNA-Binding Proteins
  • RAD50 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Glutamic Acid
  • Adenosine Triphosphate
  • DNA
  • Arginine
  • Endonucleases
  • Adenosine Triphosphatases
  • Lysine
  • Alanine