The essential ATP-binding cassette protein RLI1 functions in translation by promoting preinitiation complex assembly

J Biol Chem. 2004 Oct 1;279(40):42157-68. doi: 10.1074/jbc.M404502200. Epub 2004 Jul 23.

Abstract

RLI1 is an essential yeast protein closely related in sequence to two soluble members of the ATP-binding cassette family of proteins that interact with ribosomes and function in translation elongation (YEF3) or translational control (GCN20). We show that affinity-tagged RLI1 co-purifies with eukaryotic translation initiation factor 3 (eIF3), eIF5, and eIF2, but not with other translation initiation factors or with translation elongation or termination factors. RLI1 is associated with 40 S ribosomal subunits in vivo, but it can interact with eIF3 and -5 independently of ribosomes. Depletion of RLI1 in vivo leads to cessation of growth, a lower polysome content, and decreased average polysome size. There was also a marked reduction in 40 S-bound eIF2 and eIF1, consistent with an important role for RLI1 in assembly of 43 S preinitiation complexes in vivo. Mutations of conserved residues in RLI1 expected to function in ATP hydrolysis were lethal. A mutation in the second ATP-binding cassette domain of RLI1 had a dominant negative phenotype, decreasing the rate of translation initiation in vivo, and the mutant protein inhibited translation of a luciferase mRNA reporter in wild-type cell extracts. These findings are consistent with a direct role for the ATP-binding cassettes of RLI1 in translation initiation. RLI1-depleted cells exhibit a deficit in free 60 S ribosomal subunits, and RLI1-green fluorescent protein was found in both the nucleus and cytoplasm of living cells. Thus, RLI1 may have dual functions in translation initiation and ribosome biogenesis.

MeSH terms

  • ATP-Binding Cassette Transporters / physiology*
  • Cell Cycle Proteins / metabolism
  • Eukaryotic Initiation Factor-3 / metabolism
  • Eukaryotic Initiation Factors / metabolism*
  • Fungal Proteins / physiology*
  • Macromolecular Substances
  • Protein Binding
  • Protein Biosynthesis*
  • Ribosomes
  • Saccharomyces cerevisiae Proteins / metabolism
  • Saccharomyces cerevisiae Proteins / physiology*

Substances

  • ATP-Binding Cassette Transporters
  • Cell Cycle Proteins
  • Eukaryotic Initiation Factor-3
  • Eukaryotic Initiation Factors
  • Fungal Proteins
  • Macromolecular Substances
  • RLI1 protein, S cerevisiae
  • RPG1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins