Dbp9p, a putative ATP-dependent RNA helicase involved in 60S-ribosomal-subunit biogenesis, functionally interacts with Dbp6p

RNA. 2001 Sep;7(9):1317-34. doi: 10.1017/s1355838201010640.

Abstract

Ribosome synthesis is a highly complex process and constitutes a major cellular activity. The biogenesis of this ribonucleoprotein assembly requires a multitude of protein trans-acting factors including several putative ATP-dependent RNA helicases of the DEAD-box and related protein families. Here we show that the previously uncharacterized Saccharomyces cerevisiae open reading frame YLR276C, hereafter named DBP9 (DEAD-box protein 9), encodes an essential nucleolar protein involved in 60S-ribosomal-subunit biogenesis. Genetic depletion of Dbp9p results in a deficit in 60S ribosomal subunits and the appearance of half-mer polysomes. This terminal phenotype is likely due to the instability of early pre-ribosomal particles, as evidenced by the low steady-state levels and the decreased synthesis of the 27S precursors to mature 25S and 5.8S rRNAs. In agreement with a role of Dbp9p in 60S subunit synthesis, we find that increased Dbp9p dosage efficiently suppresses certain dbp6 alleles and that dbp6/dbp9 double mutants show synthetic lethality. Furthermore, Dbp6p and Dbp9p weakly interact in a yeast two-hybrid assay. Altogether, our findings indicate an intimate functional interaction between Dbp6p and Dbp9p during the process of 60S-ribosomal-subunit assembly.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate / metabolism*
  • Cell Nucleolus / metabolism
  • DEAD-box RNA Helicases
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Nuclear Proteins / physiology*
  • Polyribosomes
  • Proto-Oncogene Proteins*
  • RNA Helicases / genetics
  • RNA Helicases / metabolism
  • RNA Helicases / physiology*
  • RNA Nucleotidyltransferases*
  • RNA, Ribosomal / biosynthesis
  • RNA, Ribosomal, 5.8S / biosynthesis
  • Ribosomes / metabolism*
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae / physiology
  • Saccharomyces cerevisiae Proteins*
  • Two-Hybrid System Techniques

Substances

  • DBP9 protein, S cerevisiae
  • Nuclear Proteins
  • Proto-Oncogene Proteins
  • RNA, Ribosomal
  • RNA, Ribosomal, 5.8S
  • Saccharomyces cerevisiae Proteins
  • RNA, ribosomal, 25S
  • Adenosine Triphosphate
  • RNA Nucleotidyltransferases
  • DBP6 protein, S cerevisiae
  • DEAD-box RNA Helicases
  • RNA Helicases