Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis

Nucleic Acids Res. 2000 Jun 15;28(12):2315-23. doi: 10.1093/nar/28.12.2315.

Abstract

Ribosome biogenesis requires, in addition to rRNA molecules and ribosomal proteins, a multitude of trans-acting factors. Recently it has become clear that in the yeast Saccharomyces cerevisiae many RNA helicases of the DEAD-box and related families are involved in ribosome biogenesis. Here we show that the previously uncharacterised open reading frame YDL031w (renamed DBP10 for DEAD-box protein 10) encodes an essential putative RNA helicase that is required for accurate ribosome biogenesis. Genetic depletion of Dbp10p results in a deficit in 60S ribosomal subunits and an accumulation of half-mer polysomes. Furthermore, pulse-chase analyses of pre-rRNA processing reveal a strong delay in the maturation of 27SB pre-rRNA intermediates into 25S rRNA and 7S pre-rRNA. Northern blot analyses indicate that this delay leads to higher steady-state levels of 27SB species and reduced steady-state levels of 7S pre-rRNA and 25S/5.8S mature rRNAs, thus explaining the final deficit in 60S subunit and the formation of half-mer polysomes. Consistent with a direct role in ribosome biogenesis, Dbp10p was found to be located predominantly in the nucleolus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Base Sequence
  • Cell Nucleolus / physiology
  • DEAD-box RNA Helicases
  • Gene Deletion
  • Molecular Sequence Data
  • Oligodeoxyribonucleotides
  • Open Reading Frames
  • Phenotype
  • RNA Helicases / genetics*
  • RNA Helicases / metabolism
  • RNA, Ribosomal / genetics
  • RNA, Ribosomal, 5.8S
  • Ribosomes / genetics
  • Ribosomes / physiology*
  • Saccharomyces cerevisiae / enzymology*
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae Proteins*

Substances

  • Oligodeoxyribonucleotides
  • RNA, Ribosomal
  • RNA, Ribosomal, 5.8S
  • Saccharomyces cerevisiae Proteins
  • RNA, ribosomal, 25S
  • DBP10 protein, S cerevisiae
  • DEAD-box RNA Helicases
  • RNA Helicases