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Protein Overview: SKI3

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SKI3 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..179] MSA 10.193996 View MSA. No confident structure predictions are available.
2 View Details [180..386] MSA 1.565997 View MSA. No confident structure predictions are available.
3 View Details [387..732] PSI-BLAST 20.0 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
4 View Details [733..849] PSI-BLAST 18.0 Designed protein cTPR3
5 View Details [850..935] deduced N/A No confident structure predictions are available.
6 View Details [936..1149] PSI-BLAST 4.69897 Protein farnesyltransferase alpha-subunit
7 View Details [1150..1221] PSI-BLAST 7.39794 Hop
8 View Details [1222..1432] MSA 9.537997 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • binding
  • 1.415772038524 bayes_pls_golite062009
  • protein binding
  • 0.816793912043238 bayes_pls_golite062009
  • RNA binding
  • 0.663379880504337 bayes_pls_golite062009
  • nucleic acid binding
  • 0.272790651314508 bayes_pls_golite062009
  • hydrolase activity
  • 0.271487362607254 bayes_pls_golite062009
  • transcription regulator activity
  • 0.22530421898958 bayes_pls_golite062009
  • DNA binding
  • 9.99975086740101E-4 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
  • 1.48701537593139 bayes_pls_golite062009
  • protein binding
  • 0.931467806305272 bayes_pls_golite062009
  • RNA binding
  • 0.675746721046834 bayes_pls_golite062009
  • hydrolase activity
  • 0.252678932946087 bayes_pls_golite062009
  • nucleic acid binding
  • 0.25258244124997 bayes_pls_golite062009
  • transcription regulator activity
  • 0.221255948377457 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle