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Protein Overview: PUF2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run VAM3 Sample: HX13 - trans-SNARE complex forms but fusion is blocked. Hao Xu, et al. (2010)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #29 Asynchronous Prep5-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run None Entered #17 Mitotic Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data PUF2 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..279] MSA 15.438997 View MSA. No confident structure predictions are available.
2 View Details [280..454] Pfam 3.040959 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) No confident structure predictions are available.
3 View Details [455..511] deduced N/A No confident structure predictions are available.
4 View Details [512..650] PSI-BLAST 200.0103 Pumilio 1
5 View Details [651..751] PSI-BLAST 200.0103 Pumilio 1
6 View Details [752..899] PSI-BLAST 200.0103 Pumilio 1
7 View Details [900..1075] deduced N/A No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4
Term Confidence Notes
  • RNA binding
  • 4.2310970544603 bayes_pls_golite062009
  • mRNA binding
  • 3.1237691117539 bayes_pls_golite062009
  • nucleic acid binding
  • 2.87272982027282 bayes_pls_golite062009
  • binding
  • 2.24760917108348 bayes_pls_golite062009
  • 1.12277203340218 bayes_pls_golite062009
  • single-stranded RNA binding
  • 1.08300488237934 bayes_pls_golite062009
  • protein binding
  • 0.361619805766015 bayes_pls_golite062009
  • hydrolase activity
  • 0.181856784298799 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.137774615811754 bayes_pls_golite062009
  • transcription regulator activity
  • 0.0600612010525731 bayes_pls_golite062009
  • DNA binding
  • 0.0239003246213715 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.00441912341140061 bayes_pls_golite062009
    5 No functions predicted.
    6
    Term Confidence Notes
  • RNA binding
  • 2.11573661150436 bayes_pls_golite062009
  • binding
  • 1.83406697369076 bayes_pls_golite062009
  • protein binding
  • 1.04044934052933 bayes_pls_golite062009
  • nucleic acid binding
  • 0.967597910409065 bayes_pls_golite062009
  • mRNA binding
  • 0.73831124805124 bayes_pls_golite062009
  • hydrolase activity
  • 0.0579816100130538 bayes_pls_golite062009
  • transcription regulator activity
  • 0.022274123463527 bayes_pls_golite062009
    7 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle