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Protein Overview: SHM2

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run VAM3 sample: hx1 Hao Xu, et al. (2010)
View Run VAM3 sample: hx2 Hao Xu, et al. (2010)
View Run VAM3 sample: hx3 Hao Xu, et al. (2010)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX13 - trans-SNARE complex forms but fusion is blocked. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SHM2 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..46]
[320..469]
PSI-BLAST 1689.0 Serine hydroxymethyltransferase
2 View Details [47..319] PSI-BLAST 1689.0 Serine hydroxymethyltransferase

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
  • 3.359406422625 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
  • 3.2128372762799 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
  • 3.2128372762799 bayes_pls_golite062009
  • transferase activity
  • 2.59075614411581 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
  • 2.47911083054773 bayes_pls_golite062009
  • catalytic activity
  • 2.29878871754893 bayes_pls_golite062009
  • O-phospho-L-serine:2-oxoglutarate aminotransferase activity
  • 2.1692959843619 bayes_pls_golite062009
  • transcription regulator activity
  • 1.67701710033155 bayes_pls_golite062009
  • DNA binding
  • 1.4774443071095 bayes_pls_golite062009
  • nucleic acid binding
  • 1.39741122443159 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
  • 1.28316822767388 bayes_pls_golite062009
  • transaminase activity
  • 1.24990480711889 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
  • 1.19150094103499 bayes_pls_golite062009
  • transcription factor activity
  • 1.15775909410582 bayes_pls_golite062009
  • N-succinyltransferase activity
  • 1.14675852378654 bayes_pls_golite062009
  • binding
  • 1.09053123792737 bayes_pls_golite062009
  • structural molecule activity
  • 0.754675308623467 bayes_pls_golite062009
  • methyltransferase activity
  • 0.681623261233707 bayes_pls_golite062009
  • vitamin binding
  • 0.66463470119531 bayes_pls_golite062009
  • protein binding
  • 0.613130945854863 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
  • 0.60304280865376 bayes_pls_golite062009
  • L-allo-threonine aldolase activity
  • 0.500744432308415 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
  • 0.271623203801431 bayes_pls_golite062009
  • pyridoxal phosphate binding
  • 0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
  • 0.16957228630576 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.89

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle