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Protein Overview: SED5

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..45] ORFEUS 11.05 Crystal structure of Sly1p in complex with an N-terminal peptide of Sed5p
2 View Details [46..203]
[257..340]
PSI-BLAST 39.0 Syntaxin 1A N-terminal domain
3 View Details [204..256] PSI-BLAST 39.0 Syntaxin 1A N-terminal domain

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2
Term Confidence Notes
  • phosphatidic acid binding
  • 6.29287857316152 bayes_pls_golite062009
  • SNAP receptor activity
  • 3.50393203740159 bayes_pls_golite062009
  • binding
  • 2.61337814857056 bayes_pls_golite062009
  • protein transporter activity
  • 2.305772311362 bayes_pls_golite062009
  • protein binding
  • 1.82422117934251 bayes_pls_golite062009
  • myosin head/neck binding
  • 1.76421579737303 bayes_pls_golite062009
  • transporter activity
  • 1.74189664015129 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 1.49085442233849 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.13101548288086 bayes_pls_golite062009
  • arachidonic acid binding
  • 1.11271369839161 bayes_pls_golite062009
  • SNARE binding
  • 0.71459772253941 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 0.370484918396857 bayes_pls_golite062009
  • channel activity
  • 0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
  • 0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
  • 0.0435980899803177 bayes_pls_golite062009
  • calcium channel inhibitor activity
  • 0.0422996980911705 bayes_pls_golite062009
  • phospholipid binding
  • 0.0172309833091902 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 0.00476738027966683 bayes_pls_golite062009
    3 No functions predicted.




    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle