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Protein Overview: SBP1

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
View Run MLP2 #19 Asynchronous Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)
View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #19b Asynchronous Prep1-new search criteria Keck JM, et al. (2011)
View Run MLP2 #19a Asynchronous Prep1-new search criteria Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SBP1 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..150] PSI-BLAST 25.0 Poly(A)-binding protein
2 View Details [151..294] PSI-BLAST 25.0 Poly(A)-binding protein

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • mRNA binding
  • 4.52007814408702 bayes_pls_golite062009
  • nucleic acid binding
  • 4.51665560478175 bayes_pls_golite062009
  • RNA binding
  • 4.50438526063124 bayes_pls_golite062009
  • binding
  • 3.64400841800969 bayes_pls_golite062009
  • structural molecule activity
  • 2.78501986457503 bayes_pls_golite062009
  • transcription regulator activity
  • 1.7776932219095 bayes_pls_golite062009
  • DNA binding
  • 1.65208390030564 bayes_pls_golite062009
  • 1.49431666307335 bayes_pls_golite062009
  • mRNA 5'-UTR binding
  • 1.30855696645617 bayes_pls_golite062009
  • protein binding
  • 1.12215421354121 bayes_pls_golite062009
  • transcription repressor activity
  • 0.998305828880243 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.950575788044751 bayes_pls_golite062009
  • single-stranded RNA binding
  • 0.90573796517364 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.87797657439186 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.824614388276642 bayes_pls_golite062009
  • transcription factor activity
  • 0.795084003256395 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
  • 0.461000905454505 bayes_pls_golite062009
  • hydrolase activity
  • 0.389390547875764 bayes_pls_golite062009
  • translation regulator activity
  • 0.38120065819101 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.32812362201346 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.304235325881492 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
  • 0.128616879457381 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle