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Protein Overview: YAR009C

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run YNL313C No Comments Hazbun TR, et al. (2003)
View Run YMR185W No Comments Hazbun TR, et al. (2003)
View Run MIA40 No Comments Hazbun TR, et al. (2003)
View Run LST8 No Comments Reinke A, et al. (2004)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RPA135 his-HA tag on RPA135 Schneider, DA, et al. (2006)
View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
View Run RPA135 No Comments Schneider, DA, et al. (2006)
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run MLP2 #04 Alpha Factor Prep2 Keck JM, et al. (2011)
View Run MLP2 #06 Alpha Factor Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data YAR009C Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..342] PSI-BLAST 35.69897 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
2 View Details [343..519] FFAS03 1.5 DNA-binding domain of retroviral integrase; Retroviral integrase, catalytic domain
3 View Details [520..590] deduced N/A No confident structure predictions are available.
4 View Details [591..1196] FFAS03 1.59 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • nuclease activity
  • 1.94987701094917 bayes_pls_golite062009
  • ribonuclease activity
  • 0.969438660919194 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 0.787213833707638 bayes_pls_golite062009
  • exonuclease activity
  • 0.738049151007118 bayes_pls_golite062009
  • catalytic activity
  • 0.709734459150736 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 0.332143782945747 bayes_pls_golite062009
  • hydrolase activity
  • 0.301910249637397 bayes_pls_golite062009
  • binding
  • 0.205040227344888 bayes_pls_golite062009
    2
    Term Confidence Notes
  • nuclease activity
  • 1.46638847734081 bayes_pls_golite062009
  • catalytic activity
  • 0.626203923982956 bayes_pls_golite062009
  • ribonuclease activity
  • 0.519152306822884 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 0.433654553131226 bayes_pls_golite062009
  • exonuclease activity
  • 0.292985426209423 bayes_pls_golite062009
  • binding
  • 0.27027344947123 bayes_pls_golite062009
  • hydrolase activity
  • 0.104087157972011 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • nucleotidyltransferase activity
  • 1.61389461562101 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.895925817051023 bayes_pls_golite062009
  • DNA polymerase activity
  • 0.71944542861368 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
  • 0.710149896697621 bayes_pls_golite062009
  • binding
  • 0.698775322116598 bayes_pls_golite062009
  • ribonuclease activity
  • 0.519152306822884 bayes_pls_golite062009
  • catalytic activity
  • 0.443190761359386 bayes_pls_golite062009
  • transferase activity
  • 0.343279650271418 bayes_pls_golite062009
  • nucleic acid binding
  • 0.0241260721327641 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle