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Protein Overview: SNF12_ARATH

General Information:
Name(s) found: SNF12_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 534 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: root development [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNNNNPQK PQGSAPLPFG NPGMASASVP GNQGFAQSHM AANFQAQFQF SQAQALAHAQ  60
   61 AQSKVQAQLQ AQLQAQGMTM NQAQGSPGIG GLGPSSPSLT TPGSLNMKRF QQKPPMRPPG 120
  121 APASNNTISP MRTMELTPAA RKKKQKLPEK SLQERVAAIL PESALYTQLL EFESRVDAAL 180
  181 TRKKVDIQEA LKNPPCIQKT LRIYVFNSFA NQNNTIPGNP NADPPTWTLK IIGRILEDGV 240
  241 DPDQPGFVQK ANPLHPKFSS FFKRVTVSLD QRLYPENPLI IWENARSPAP QEGFEIKRKG 300
  301 NQEFAASIRL EMNYVPEKFK LSTALMDVLG IEVETRPRII AAIWHYVKAR KLQNPNDPSF 360
  361 FNCDAALQKV FGEEKLKFTM VSQKISHHLS PPPPIHLEHK IKLSGNNPAV SACYDVLVDV 420
  421 PFPIQRDLNN LLANAEKNKE IEACDEAICA AIRKIHEHRR RRAFFLGFSQ SPVEFINALI 480
  481 ESQSKDLKVV AGEASRNAER ERRSDFFNQP WVEDAVIRYL NRRPAAGNDG PGSW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] PSI-BLAST 12.0 No description for 1y0fB was found.
    2 View Details [179..256] deduced N/A No confident structure predictions are available.
    3 View Details [257..423] PSI-BLAST 25.154902 Solution structure of the SWIB/MDM2 domain of the hypothetical protein At5g14170 from Arabidopsis thaliana
    4 View Details [424..534] MSA 1.060963 View MSA. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle