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Protein Overview: GCSP1_ARATH

General Information:
Name(s) found: GCSP1_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T05309 probable glycine dehydrogenase (decarboxylating) (EC 1.4.4.2) F26P21.130 - Arabidopsis thaliana [NCBI NR]
  • gi|7270248|emb|CAB80018.1| P-Protein-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|46576630|sp|Q94B78.2|GCSP2_ARATH RecName: Full=Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial; AltName: Full=Glycine decarboxylase 2; AltName: Full=Glycine cleavage system P-protein 2; Flags: Precursor [NCBI NR]
  • gi|3688182|emb|CAA21210.1| P-Protein-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20259565|gb|AAM14125.1| putative P-protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17380894|gb|AAL36259.1| putative P-Protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234036|ref|NP_195027.1| AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding [NCBI NR]
  • Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2 [Swiss-Prot]
  • Glycine dehydrogenase (decarboxylating) 1, mitochondrial OS=Arabidopsis thaliana GN=GLDP1 PE=1 SV=2 [Swiss-Prot]
  • (Q94B78) Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) [Swiss-Prot]
  • (O82642) P-protein - like protein (Putative glycine cleavage system P-protein) [athaliana3702.FASTAC.txt]
  • putative P-protein [Arabidopsis thaliana]gi|17380894|gb|AAL36259.1| putative P-Protein [Arabidopsis thaliana]gi|7270248|emb|CAB80018.1| P-Protein-like protein [Arabidopsis thaliana]gi|3688182|emb|CAA21210.1| P-Protein-like protein [Arabidopsis thaliana [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATGLDP1 | ATGLDP1 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 1); glycine dehydrogenase (decarboxylating) | chr4:15926855-15931153 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative P-protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glycine dehydrogenase (decarboxylating) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • P-Protein-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative P-Protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) [nr-271106-contam.fasta]
  • | Symbols: AtGLDP1, GLDP1 | glycine decarboxylase P-protein 1 | chr4:15926852-15931150 REVERSE LENGTH=1037 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GLDP1 PE=1 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1037 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    apoplast [IDA]
    chloroplast envelope [IDA]
    glycine cleavage complex [ISS]
    Biological Process: glycine decarboxylation via glycine cleavage system [ISS]
    response to cadmium ion [IDA]
    glycine catabolic process [IMP]
    Molecular Function: protein binding [IPI]
    glycine dehydrogenase (decarboxylating) activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERARRLAYR GIVKRLVNDT KRHRNAETPH LVPHAPARYV SSLSPFISTP RSVNHTAAFG  60
   61 RHQQTRSISV DAVKPSDTFP RRHNSATPDE QTHMAKFCGF DHIDSLIDAT VPKSIRLDSM 120
  121 KFSKFDAGLT ESQMIQHMVD LASKNKVFKS FIGMGYYNTH VPTVILRNIM ENPAWYTQYT 180
  181 PYQAEISQGR LESLLNFQTV ITDLTGLPMS NASLLDEGTA AAEAMAMCNN ILKGKKKTFV 240
  241 IASNCHPQTI DVCKTRADGF DLKVVTSDLK DIDYSSGDVC GVLVQYPGTE GEVLDYAEFV 300
  301 KNAHANGVKV VMATDLLALT VLKPPGEFGA DIVVGSAQRF GVPMGYGGPH AAFLATSQEY 360
  361 KRMMPGRIIG ISVDSSGKQA LRMAMQTREQ HIRRDKATSN ICTAQALLAN MAAMYAVYHG 420
  421 PAGLKSIAQR VHGLAGIFSL GLNKLGVAEV QELPFFDTVK IKCSDAHAIA DAASKSEINL 480
  481 RVVDSTTITA SFDETTTLDD VDKLFKVFAS GKPVPFTAES LAPEVQNSIP SSLTRESPYL 540
  541 THPIFNMYHT EHELLRYIHK LQSKDLSLCH SMIPLGSCTM KLNATTEMMP VTWPSFTDIH 600
  601 PFAPVEQAQG YQEMFENLGD LLCTITGFDS FSLQPNAGAA GEYAGLMVIR AYHMSRGDHH 660
  661 RNVCIIPVSA HGTNPASAAM CGMKIITVGT DAKGNINIEE VRKAAEANKD NLAALMVTYP 720
  721 STHGVYEEGI DEICNIIHEN GGQVYMDGAN MNAQVGLTSP GFIGADVCHL NLHKTFCIPH 780
  781 GGGGPGMGPI GVKNHLAPFL PSHPVIPTGG IPQPEKTAPL GAISAAPWGS ALILPISYTY 840
  841 IAMMGSGGLT DASKIAILNA NYMAKRLEKH YPVLFRGVNG TVAHEFIIDL RGFKNTAGIE 900
  901 PEDVAKRLMD YGFHGPTMSW PVPGTLMIEP TESESKAELD RFCDALISIR EEIAQIEKGN 960
  961 ADVQNNVLKG APHPPSLLMA DTWKKPYSRE YAAFPAPWLR SSKFWPTTGR VDNVYGDRKL1020
 1021 VCTLLPEEEQ VAAAVSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] deduced N/A No confident structure predictions are available.
    2 View Details [83..496] PSI-BLAST 73.0 Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
    3 View Details [497..1037] PSI-BLAST 87.30103 Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle