YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|5103839, gi|2...

General Information:
Name(s) found: gi|5103839 [NCBI NR]
gi|26983862 [NCBI NR]
gi|15218160 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|5103839|gb|AAD39669.1|AC007591_34 Is a member of the PF|01177 Aspartate-glutamate racemase family. EST gb|T43554 comes from this gene. [Arabidopsis thaliana] [NCBI NR]
  • gi|26983862|gb|AAN86183.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15218160|ref|NP_172993.1| aspartate-glutamate racemase family [Arabidopsis thaliana] [NCBI NR]
  • (Q9XI28) F9L1.36 protein (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|5103839|gb|AAD39669.1| Is a member of the PF|01177 Aspartate-glutamate racemase family. EST gb|T43554 comes from this gene. [Arabidopsis thaliana]gi|15218160|ref|NP_172993.1| aspartate-glutamate racemase family [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartate-glutamate racemase family [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartate-glutamate racemase family | chr1:5299572-5300676 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Is a member of the PF|01177 Aspartate-glutamate racemase family. EST gb|T43554 comes from this gene. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • racemase and epimerase, acting on amino acids and derivatives [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartate-glutamate racemase-like protein OS=Arabidopsis thaliana GN=F9L1.36 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 330 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: metabolic process [IEA][ISS]
    cellular amino acid metabolic process [IEA]
    Molecular Function: racemase and epimerase activity, acting on amino acids and derivatives [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLQIFNNPS HGLAHLCYSS RVSCRVRLSR VLAMPPSSVL LHMDESNDLP KPKKGFCLSE  60
   61 DSRNSLNSLP ADSLLRQANT VGIIGGVSTD STLKFVKKLV DWSSNDGKSS LPFVLCSDPA 120
  121 LNKELLLYEE NSYPSLYHRE ESTPVDPKLI VENLRNKRRY LERCGAKLIL MPCHIAHIWY 180
  181 EEVCEGSLVP LLHMGECIAK ELQEAKMKPL EAGNPLRVGV MATSATLSAG FYQEKLQSNG 240
  241 FEAVLPDKAT MEHTVIPSIE AMKRKDMEGA RNLLRIALQV LLVQAVNVVM LGSDEMRDLL 300
  301 PGDDPLLKKC VDPMDALARS AIKWAENRCS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..330] PSI-BLAST 54.0 Aspartate racemase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.33753631018007 bayes_pls_golite062009
  • isomerase activity
    		•  0.58494479979202 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.55904530107057 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  0.554911941249189 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  0.04031032031265 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle