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Protein Overview: LDL2_ARATH

General Information:
Name(s) found: LDL2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9294014|dbj|BAB01917.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|75273358|sp|Q9LID0.1|LDL2_ARATH RecName: Full=Lysine-specific histone demethylase 1 homolog 2; AltName: Full=Flavin-containing amine oxidase domain-containing protein 2; AltName: Full=Protein LSD1-LIKE 2 [NCBI NR]
  • gi|15231329|ref|NP_187981.1| LDL2 (LSD1-LIKE2); amine oxidase/ electron carrier/ oxidoreductase [Arabidopsis thaliana] [NCBI NR]
  • Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1 [Swiss-Prot]
  • (Q9LID0) Similarity to amine oxidase [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15231329|ref|NP_187981.1| amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Amine oxidase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LDL2 | LDL2 (LSD1-LIKE2); amine oxidase | chr3:4479200-4481516 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • amine oxidase/ oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LDL2 (LSD1-LIKE2); amine oxidase/ electron carrier/ oxidoreductase [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509 REVERSE LENGTH=746 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 746 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: histone H3-K4 methylation [IMP]
    Molecular Function: oxidoreductase activity [IEA]
    amine oxidase activity [ISS]
    electron carrier activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI  60
   61 ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV ARWRGNVGIW LLKDQIRETV 120
  121 SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEGTEG SVIVVGAGLA GLAAARQLLS 180
  181 FGFKVLVLEG RSRPGGRVYT QKMGGKDRFA AVELGGSVIT GLHANPLGVL ARQLSIPLHK 240
  241 VRDNCPLYNS EGVLVDKVAD SNVEFGFNKL LDKVTEVREM MEGAAKKISL GEVLETLRVL 300
  301 YGVAKDSEER KLFDWHLANL EYANAGCLSN LSAAYWDQDD PYEMGGDHCF LAGGNWRLIN 360
  361 ALAEGLPIIY GKSVDTIKYG DGGVEVISGS QIFQADMILC TVPLGVLKKR SIKFEPELPR 420
  421 RKQAAIDRLG FGLLNKVAML FPSVFWGDEL DTFGCLNESS INRGEFFLFY AYHTVSGGPA 480
  481 LVALVAGEAA QRFECTEPSV LLHRVLKKLR GIYGPKGVVV PDPIQTVCTR WGSDPLSYGS 540
  541 YSHVRVGSSG VDYDILAESV SNRLFFAGEA TTRQHPATMH GAYLSGLREA SKILHVANYL 600
  601 RSNLKKPVQR YSGVNINVLE DMFKRPDIAI GKLSFVFNPL TDDPKSFGLV RVCFDNFEED 660
  661 PTNRLQLYTI LSREQANKIK ELDENSNESK LSCLMNTLGL KLMGANSVLD TGGALISVIA 720
  721 NARRGRSRSH VVAGQCNLPL NPLHFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..157] PSI-BLAST 27.30103 Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
    2 View Details [158..544] PSI-BLAST 15.69897 udp-galactopyranose mutase from Klebsiella pneumoniae oxidised FAD
    3 View Details [545..614] PSI-BLAST 46.0 No description for 2v1dA was found.
    4 View Details [615..746] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.44

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle