YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: TRPA2_ARATH

General Information:
Name(s) found: TRPA2_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
SHOW ALL
  • Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 312 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: callose deposition in cell wall during defense response [IMP]
    tryptophan biosynthetic process [TAS]
    defense response to bacterium [IMP]
    Molecular Function: tryptophan synthase activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAFKSGVF FLQSPKSQIG FRHSSPPDSS LSFKRFTPMA SLSTSSPTLG LADTFTQLKK  60
   61 QGKVAFIPYI TAGDPDLSTT AEALKVLDAC GSDIIELGVP YSDPLADGPV IQAAATRSLE 120
  121 RGTNLDSILE MLDKVVPQIS CPISLFTYYN PILKRGLGKF MSSIRAVGVQ GLVVPDVPLE 180
  181 ETEMLRKEAL NNDIELVLLT TPTTPTERMK LIVDASEGFI YLVSSIGVTG ARSSVSGKVQ 240
  241 SLLKDIKEAT DKPVAVGFGI SKPEHVKQIA GWGADGVIVG SAMVKLLGDA KSPTEGLKEL 300
  301 EKLTKSLKSA LL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..312] PSI-BLAST 60.69897 Crystal structure of Tryptophan synthase alpha chain homolog BX1: a member of the chemical plant defense system

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.15663465352598 bayes_pls_golite062009
  • indole-3-glycerol-phosphate synthase activity
    		•  3.12120866545322 bayes_pls_golite062009
  • catalytic activity
    		•  2.81275055404078 bayes_pls_golite062009
  • phosphoribosylanthranilate isomerase activity
    		•  2.655130814615 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  2.44001937916931 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.80978905789979 bayes_pls_golite062009
  • lyase activity
    		•  0.9228652996943 bayes_pls_golite062009
  • imidazoleglycerol-phosphate synthase activity
    		•  0.82314869965119 bayes_pls_golite062009
  • 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity
    		•  0.302746738903759 bayes_pls_golite062009
  • isomerase activity
    		•  0.14149405165663 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.77

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle