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Protein Overview: CAF1B_ARATH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..286] PSI-BLAST 104.0 No description for 2d5rA was found.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ribonuclease activity
  • 5.30591758406946 bayes_pls_golite062009
  • exoribonuclease activity
  • 3.71639182685131 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 3.59362615133405 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 3.1992647486402 bayes_pls_golite062009
  • nuclease activity
  • 3.11657409772275 bayes_pls_golite062009
  • ribonuclease H activity
  • 2.91966688044755 bayes_pls_golite062009
  • hydrolase activity
  • 2.78602644579272 bayes_pls_golite062009
  • 2.73492915653996 bayes_pls_golite062009
  • endonuclease activity
  • 2.63074055051349 bayes_pls_golite062009
  • endoribonuclease activity
  • 2.59247838057313 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 2.57498413015114 bayes_pls_golite062009
  • transcription regulator activity
  • 2.20855917457806 bayes_pls_golite062009
  • nucleic acid binding
  • 2.14285769817394 bayes_pls_golite062009
  • exonuclease activity
  • 1.87925169250843 bayes_pls_golite062009
  • DNA binding
  • 1.86594005896134 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 1.44123900197846 bayes_pls_golite062009
  • RNA binding
  • 1.43996903907704 bayes_pls_golite062009
  • transcription activator activity
  • 1.43417601839369 bayes_pls_golite062009
  • binding
  • 1.35497934205068 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 1.32513822925426 bayes_pls_golite062009
  • catalytic activity
  • 1.25233849524628 bayes_pls_golite062009
  • transcription factor activity
  • 1.17659544650821 bayes_pls_golite062009
  • protein binding
  • 1.08578027658199 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.71760273606768 bayes_pls_golite062009
  • endoribonuclease activity, producing 5'-phosphomonoesters
  • 0.708753843279937 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 0.615788727884275 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 0.598360955770972 bayes_pls_golite062009
  • deoxyribonuclease activity
  • 0.24906263529692 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
  • 0.09423425042945 bayes_pls_golite062009
  • DNA polymerase activity
  • 0.0189279348688405 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle