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Protein Overview: SSY1_ARATH

General Information:
Name(s) found: SSY1_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
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  • Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 652 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    Biological Process: amylopectin biosynthetic process [IDA]
    Molecular Function: transferase activity, transferring glycosyl groups [ISS]
    starch synthase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES  60
   61 DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH HEEKKEAIDQ IVMADFGVPG 120
  121 NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV 180
  181 ISPRYLNGTA ADKNYARAKD LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG 240
  241 NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA 300
  301 KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG 360
  361 EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL SSRKSVINGI TNGINVDEWN 420
  421 PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG 480
  481 PDLMVDDIQF VMLGSGDPKY ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS 540
  541 RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS 600
  601 ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] deduced N/A No confident structure predictions are available.
    2 View Details [142..652] PSI-BLAST 77.30103 Crystal structure of the glycogen synthase from A. tumefaciens in complex with ADP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • glycogen phosphorylase activity
    		•  3.34851380039572 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  3.04530122157712 bayes_pls_golite062009
  • catalytic activity
    		•  3.02192459767177 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.94500176353224 bayes_pls_golite062009
  • phosphorylase activity
    		•  2.90311878311075 bayes_pls_golite062009
  • glycogen (starch) synthase activity
    		•  2.05207088363955 bayes_pls_golite062009
  • glucosyltransferase activity
    		•  1.8062586862583 bayes_pls_golite062009
  • transferase activity
    		•  1.67770954408305 bayes_pls_golite062009
  • UDP-N-acetylglucosamine 2-epimerase activity
    		•  1.63103907245982 bayes_pls_golite062009
  • lipopolysaccharide heptosyltransferase activity
    		•  1.555502709955 bayes_pls_golite062009
  • UDP-glucosyltransferase activity
    		•  1.4199532885636 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  1.30934991061674 bayes_pls_golite062009
  • starch synthase activity
    		•  1.073959209177 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.27693350081385 bayes_pls_golite062009
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•  0.22009679964126 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle