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Protein Overview: SOX_ARATH

General Information:
Name(s) found: SOX_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|46251338|gb|AAS84616.1| peroxisomal sarcosine/pipecolate oxidase [Arabidopsis thaliana] [NCBI NR]
  • gi|4572673|gb|AAD23888.1| putative sarcosine oxidase [Arabidopsis thaliana] [NCBI NR]
  • pir||D84638 probable sarcosine oxidase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21436151|gb|AAM51322.1| putative sarcosine oxidase [Arabidopsis thaliana] [NCBI NR]
  • gi|20139956|sp|Q9SJA7.1|SOX_ARATH RecName: Full=Probable sarcosine oxidase [NCBI NR]
  • gi|17529040|gb|AAL38730.1| putative sarcosine oxidase [Arabidopsis thaliana] [NCBI NR]
  • gi|15224169|ref|NP_180034.1| sarcosine oxidase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110742357|dbj|BAE99101.1| putative sarcosine oxidase [Arabidopsis thaliana] [NCBI NR]
  • Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1 [Swiss-Prot]
  • (Q9SJA7) Potential sarcosine oxidase (EC 1.5.3.1) [athaliana3702.FASTAC.txt]
  • putative sarcosine oxidase [Arabidopsis thaliana]gi|17529040|gb|AAL38730.1| putative sarcosine oxidase [Arabidopsis thaliana]gi|4572673|gb|AAD23888.1| putative sarcosine oxidase [Arabidopsis thaliana]gi|46251338|gb|AAS84616.1| peroxisomal sarcosine/pip [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Putative sarcosine oxidase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | sarcosine oxidase family protein | chr2:10452007-10453257 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative sarcosine oxidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • sarcosine oxidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable sarcosine oxidase [nr-271106-contam.fasta]
  • peroxisomal sarcosine/pipecolate oxidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | FAD-dependent oxidoreductase family protein | chr2:10444928-10446178 REVERSE LENGTH=416 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: tetrahydrofolate metabolic process [IEA]
    Molecular Function: sarcosine oxidase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYSDDGRFD VIVVGAGVMG SSAAYQLAKR GQKTLLLEQF DFLHHRGSSH GESRTIRATY  60
   61 PEDYYYSMVS ESTRLWAAAQ SEIGYKVHFP TQQFDMGPAD QQSLLSVVAT CQKHGLAHRV 120
  121 MDSHAVSEHF SGRISIPENW IGVSTELGGI IKPTKAVSMF QTLAIGHGAI LRDNTKVANI 180
  181 KRDGESGEGV IVCTVKGDKF YGKKCIVTAG AWISKLVKTV AGIDFPVEPL ETTVCYWRIK 240
  241 EGHEEKFTID GEFPTFASYG APYVYGTPSL EYPGLIKVAV HGGYWCDPDK RPWGPGVKLE 300
  301 ELKEWIKERF GGMVDSEGPV ATQLCMYSMT PDEDFVIDFL GGEFGRDVVV GGGFSGHGFK 360
  361 MAPAVGRILA DMAMEVEAGG GGVEMKQFSL RRFEDNPKGN AKEYPDQVIL DVPLKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..416] PSI-BLAST 52.09691 Sarcosine oxidase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.61125987248836 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.07245967881566 bayes_pls_golite062009
  • catalytic activity
    		•  1.03127962968326 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.943208146517927 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  0.681230241795345 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors
    		•  0.397770205910041 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle