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Protein Overview: LBD29_ARATH

General Information:
Name(s) found: LBD29_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|94442495|gb|ABF19035.1| At3g58190 [Arabidopsis thaliana] [NCBI NR]
  • gi|6735331|emb|CAB68157.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|29428017|sp|Q9M2J7.1|LBD29_ARATH RecName: Full=LOB domain-containing protein 29; AltName: Full=ASYMMETRIC LEAVES 2-like protein 16; Short=AS2-like protein 16 [NCBI NR]
  • gi|219807108|dbj|BAH10560.1| ASYMMETRIC LEAVES2-like 16 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17227168|gb|AAL38038.1|AF447893_1 LOB DOMAIN 29 [Arabidopsis thaliana] [NCBI NR]
  • gi|15230971|ref|NP_191378.1| LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) [Arabidopsis thaliana] [NCBI NR]
  • gi|11357895|pir||T45979 hypothetical protein F9D24.100 - Arabidopsis thaliana [NCBI NR]
  • LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1 [Swiss-Prot]
  • (Q9M2J7) LOB domain protein 29 [Swiss-Prot]
  • LOB DOMAIN 29 [Arabidopsis thaliana]gi|6735331|emb|CAB68157.1| putative protein [Arabidopsis thaliana]gi|29428017|sp|Q9M2J7|LB29_ARATH LOB domain protein 29gi|11357895|pir||T45979 hypothetical protein F9D24.100 - Arabidopsis thalianagi|15230971|ref|NP [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 LOB domain protein 29 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LBD29, ASL16 | ASL16/LBD29 (LOB DOMAIN-CONTAINING PROTEIN 29) | chr3:21559693-21560465 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • LOB domain-containing protein 29 [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g58190 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • LOB DOMAIN 29 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LBD29, ASL16 | lateral organ boundaries-domain 29 | chr3:21548716-21549488 REVERSE LENGTH=218 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 218 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: lateral root formation [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSSSSSGS PCGACKFLRR KCAKGCVFAP YFCHEQGASH FAAIHKVFGA SNASKLLSHL  60
   61 PISDRCEAAI TISYEAQARL QDPIYGCVSH IFALQQQVVN LQAELEILKQ QAAQSMIFAD 120
  121 SPTSENPNSY YGDTTKAPYH HDHQNIYHHH DQTHLVYQTG SSGTVQHGDA TESSYHNETS 180
  181 SGMGEFSIYS DLEQHLNTFN QDHLKELQSA NFGYISFS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] Pfam 66.920819 No description for PF03195.5 was found. No confident structure predictions are available.
    2 View Details [122..218] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle