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Protein Overview: CE28285

General Information:
Name(s) found: CE28285 [WormBase]
Description(s) found:
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  • WBGene00008094 status:Partially_confirmed TR:Q93376 protein_id:CAB01868.2 [WormBase]
  • gi|17551024|ref|NP_510427.1| hypothetical protein C44H4.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|14787714|emb|CAB01868.2| C. elegans protein C44H4.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28285 WBGene00008094 status:Partially_confirmed TR:Q93376 protein_id:CAB01868.2 [wormpep150.fasta]
  • 28285 WBGene00008094 status:Partially_confirmed TR:Q93376 protein_id:CAB01868.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein of eukaryotic origin (XP188) [Caenorhabditis elegans]gi|14787714|emb|CAB01868.2| Hypothetical protein C44H4.4 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q93376 protein_id:CAB01868.2 [wormpep115.fasta.reversed]
  • CE28285 status:Partially_confirmed TR:Q93376 protein_id:CAB01868.2 [wormpep80.hongbin]
  • CE28285 WBGene00008094 status:Partially_confirmed UniProt:Q93376_CAEEL protein_id:CAB01868.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • C. elegans protein C44H4.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • CE28285 WBGene00008094 status:Partially_confirmed UniProt:Q93376_CAEEL protein_id:CAB01868.2| [wormORF-contam.fasta]
  • Hypothetical protein C44H4.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C44H4.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 745 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIKNQLV KHLSKFTKNL KPEQISLDVL KGNSKLQFIE INEDVLTEIL ELPSWLKIKR  60
   61 AFCTGVAVNV PWTKLKTCPI QIFIDEINVD VELTNEHKKQ AKSNPLGNLG DSSSYGFMNK 120
  121 IIENMSLYIS SVEINFDSDV FGGSFMLQRL SVESRSPGWA QVKDLRQTRI TCSETNRTLM 180
  181 FKQLSWHLLR IEASAKTSKN EQRSKINAPL RLITSGGKIR IALKKNVNDG SVIHARIQTI 240
  241 LDDILWVATL PQLRSAISFA SYIAKLVKES QKNDVITTSS GNDNPFMKAA GNSATADAST 300
  301 ISSAYNIFYF DQTSYHLHVK KIDLHLCDDA HTASDYPPDW DIESGAMQVT LYQVLIDVYP 360
  361 KAHAQSDRST WMRYSNTNPI AAWFRNHLSE QFLTLLGNAE GQTTRTRLER CWPQLIGFFV 420
  421 VLRVHDLTIQ CVSDMNTKKD ALTNLFESER HLHSLPSDQQ IVHVEFGAFY HPHSDKLPVP 480
  481 NSAVYFQLGP FTISFDERTM RWCCYVAHAL SSAIEDGNLI PENELDIQPP TIKVNLVMPR 540
  541 LVLNLPGPFT DFNFPRRLVT SMSTLSISSS QIDFKENSRF RILSESTDEH SDVKNQLING 600
  601 LNKFHICTSP VWIEIDHGPQ TKGFPFLHDV SFNGILAIDK DKVNVLVEPA EDVAVVVDHY 660
  661 QFLQLTRLGD KFTKFLDQLT LDMKHYNTNK PKSDVTVDFL ASIARIRLYI VLTMGEIASP 720
  721 YDSAAMSNFN HSFMDRLSGM LLFFY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] MSA 16.147994 View MSA. No confident structure predictions are available.
    2 View Details [111..275] MSA 4.143994 View MSA. No confident structure predictions are available.
    3 View Details [276..344] deduced N/A No confident structure predictions are available.
    4 View Details [345..519] MSA 1.026963 View MSA. No confident structure predictions are available.
    5 View Details [520..624] deduced N/A No confident structure predictions are available.
    6 View Details [625..745] MSA 1.011971 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle