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Protein Overview: prp12

General Information:
Name(s) found: prp12 / SPAPJ698.03c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • U2 snRNP-associated protein Sap130 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1206 amino acids

    Gene Ontology:
    Cellular Component: spliceosomal complex [RCALink to PubMed article]
    U2 snRNP [ISSLink to PubMed article]
    Biological Process: spliceosome assembly [ISSLink to PubMed article]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: U2 snRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTFPSLFLY SLTIQNSNYV QSSCAASLSG KKAQEIVIAT ESRLLIYKVD ATDGRMNCIL  60
   61 NQNCFGIIRN VAPLRLTGFK RDYLVVTSDS GRITILEYNV EKNKLVPIYQ ETFGKSGIRR 120
  121 VVPGEYLAID AKGRAAMIAS VEKNKLVYVL NRDSEANLTI SSPLEAHKAN NICFHLIGLD 180
  181 TGYANPIFAA LEVDYSEIDH DSTREAFTSS EKVLSYYELD LGLNHVVKRW SKVVDRNSYM 240
  241 LIPVPGGNDG PSGTLVISNG WISYRHLQKA FHQIPILRRQ AASANAISTP WNQVNSNSAN 300
  301 DGPLIVSAVL HKMKGSFFYL LQTGDGDLLK LTIEHDGQGN VVELRLKYFD TVPLAVQLNI 360
  361 LKTGFLFVAT EFGNHQLYQF ENLGIDDDEL EITSLDFQAQ DNEVGTKNVH FGVRGLQNLS 420
  421 LVEEIPSLYS LTDTLLMKAP SSGEANQLYT VCGRGSNSSL RQLRRGLETT EIVASELPGA 480
  481 PIAIWTLKLN QTDVYDSYII LSFTNGTLVL SIGETVEEIS DSGFLSSVST LNARQMGRDS 540
  541 LVQIHPKGIR YIRANKQTSE WKLPQDVYVV QSAINDMQIV VALSNGELVY FEMSDDVEGG 600
  601 QLNEYQERKT LTANVTSLAL GPVQEGSRRS NFMCLACDDA TVRVLSLDLY TTLENLSVQA 660
  661 LSSPANSLCI IPMNVNGVST LYLHIGLMNG VYLRTVIDVT SGQLLDTRTR FLGPRAVKIY 720
  721 PITMKNQNTV LAVSSRTFLA YSYQQNLQLS PIAYSAIDHA SSFASEQCPE GIVAIQKNTL 780
  781 KIFTVDSLQD DLKSDIYPLI CTPRKIVKHP NFPVLYILQS ERNFDSFKYA QENGDVGSSY 840
  841 TKEKQNEHTS KSWVSFISVF DMISKKIIHE SPLGDNEAAF SMTAAFFKNR DEFFLVAGSA 900
  901 TNMDLECRTC SHGNFRVYRF HDEGKKLELI SHTEIDGIPM ALTPFQGRML AGVGRFLRIY 960
  961 DLGNKKMLRK GELSAVPLFI THITVQASRI VVADSQYSVR FVVYKPEDNH LLTFADDTIH1020
 1021 RWTTTNVLVD YDTLAGGDKF GNIWLLRCPE HVSKLADEEN SESKLIHEKP FLNSTPHKLD1080
 1081 LMAHFFTNDI PTSLQKVQLV EGAREVLLWT GLLGTVGVFT PFINQEDVRF FQQLEFLLRK1140
 1141 ECPPLAGRDH LAYRSYYAPV KCVIDGDLCE MYYSLPHPVQ EMIANELDRT IAEVSKKIED1200
 1201 FRVRSF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1206] PSI-BLAST 1000.0 Crystal Structure of DDB1 In Complex with Simian Virus 5 V Protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle