YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: cip1

General Information:
Name(s) found: cip1 / SPBC16A3.18 [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T39534 hypothetical protein SPBC16A3.18 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74675988|sp|O42923.1|CIP1_SCHPO RecName: Full=RNA-binding post-transcriptional regulator cip1; AltName: Full=Csx1-interacting protein 1 [NCBI NR]
  • gi|2842517|emb|CAA16869.1| RNA-binding protein Cip1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19113563|ref|NP_596771.1| RNA-binding protein Cip1 [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein Cip1 [Sanger Pombe]
  • RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe GN=cip1 PE=1 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; CONTAINS RRM RNA RECOGNITION MOTIF: O42923; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN WITH RRM RNA RECOGNITION MOTIF: O42923; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPBC16A3.18 protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2842517|emb|CAA16869.1| SPBC16A3.18 [Schizosaccharomyces pombe]gi|7491397|pir||T39534 hypothetical protein SPBC16A3.18 - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (O42923) Hypothetical protein [pompep4896_normal_reversed]
  • |cip1||RNA-binding protein Cip1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC16A3.18 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC16A3.18 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • RNA-binding post-transcriptional regulator cip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cip1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 490 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: regulation of mRNA stability involved in response to stress [IMPLink to PubMed article]
    cellular response to oxidative stress [IGILink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNEIFPWKI RVDESRGLAG NSGTKKSNHE ALSRLQSPLN SPKLQPIGSP QASRKTSGSG  60
   61 SSAPLYPKWS GALSLASSRA ASPAPSDSFP TFGYSQLGGL ENSSKGSALF NSANSIGTPY 120
  121 LSSRNSNSAN EASAMAFHNV SPPSGAESSS ESKSFSASGK GNKADTSAEP SLDAFNSTQI 180
  181 KAGSTANSNS TPVEPGEDTI PTAIVVKNIP FSLEKDTLLD HFKQLGIPRP YAFNYHYDNG 240
  241 IFRGLAFANF YRPEEAQVVV QTLNGYEING RRLRVEWKRQ LPAAEREKVE KAKKRQAEER 300
  301 RRKQQYKMFE VSFTDQGLNL NDTGTLETYS RLLLFAHQCI PSREITFETT SKDGNLLNAI 360
  361 RIFCLYFDLD YYARPNGEVL KLVVTHPNKK NTSVSQSQPA SPNLRFNMPA PLATRFLQEH 420
  421 SLNGTKSAPI TPPPSFAVPL TNQLRSIDDK IYGNESPLQK ASTLSSPFNS KNDNDASTSA 480
  481 SKQSFGVSHF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..287] PSI-BLAST 37.69897 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [288..391] PSI-BLAST 6.69897 No description for 2go9A was found.
    3 View Details [392..490] MSA 3.486996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle