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Protein Overview: snf5

General Information:
Name(s) found: snf5 / SPAC2F7.08c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • chromatin remodeling complex subunit Snf5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 632 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [IDALink to PubMed article]
    nuclear chromatin [IC]
    cytoplasm [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: chromatin remodeling [ISSLink to PubMed article]
    positive regulation of cell-substrate adhesion [IMPLink to PubMed article]
    positive regulation of gene-specific transcription from RNA polymerase II promoter [IEPLink to PubMed article]
    negative regulation of gene-specific transcription from RNA polymerase II promoter [IEPLink to PubMed article]
    regulation of transcription from RNA polymerase II promoter [ISSLink to PubMed article]
    Molecular Function: general RNA polymerase II transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKDIGSAVA ELQVCSTHYA MTIVSCGFHS PQSLMNADLQ HCLLADQNYL LNNSNKNKGS  60
   61 IIEENTRKPF QSARNLQTSL KTHPESAITR YGLGYAGFGN GWTALKPKIL FPSQKRRVKG 120
  121 RFTFPFSRRS NLAQSKLPVD LVPIRLEIDA DRYKLRDSFT WNLYDKCISL DQFAEQICID 180
  181 YDIPLHNVHI VQNISKSIQA QINDYEPRKA QSNLSFVSDV SSSTSETVYA HEPSDSLAKA 240
  241 SKQQIPTVQN DLRILIKLDI TIGRLNLIDQ FEWNLFAPES SAEEFATVMC LDLGLSGEFC 300
  301 TAVAHSIREQ CQMYIKYLSL IGYLFDGSEI EDEEVRSYIL PPLKNTLRFS DMESSSFAPM 360
  361 IYELNDAEME RQDRGYDREA RRMRRRQGRA KHGIMLPDLR DIPKIHRSLF PSSSVPSDDD 420
  421 FMHALSLSTN SDGETLNEIN TNNPEREHLI VRLKVDSQKL KIIVEQSQTL TLNNFQQRKL 480
  481 TPLPNSMSFD SLNEFESERN TPSTYGQNIS PLPQFSSPSL SSDAFLTNSN SSESALVHMQ 540
  541 KLNLPDFTPS WVKRCVIETF AKFPNDRFNV IVKPALNPAE RMTVRICCHD CINEYFTAGP 600
  601 GFTFGNFHIH LLSSSHQQKK EVRMNTVLDR NT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..234] deduced N/A No confident structure predictions are available.
    2 View Details [235..392] deduced N/A No confident structure predictions are available.
    3 View Details [393..632] MSA 40.185997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle