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Protein Overview: swi10

General Information:
Name(s) found: swi10 / SPBC4F6.15c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • DNA repair endonuclease [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 252 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleotide-excision repair complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nucleotide-excision repair, DNA incision, 5'-to lesion [IGILink to PubMed article]
    gene conversion at mating-type locus [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEA]
    protein heterodimerization activity [IPILink to PubMed article]
    polyubiquitin binding [IDALink to PubMed article]
    damaged DNA binding [IEA]
    single-stranded DNA specific endodeoxyribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIDDEEFE QLAVSALEEV EKKAGFAQQP TPQKVSRVTA HSILVNPRQK GNPLLPHVRN  60
   61 VPWEYTDIVP DFVMGTGICS LFLSLKYHHL HPEYIYSRIS KLGKSYNLRI LLILVDVENH 120
  121 QASIQELVKT SIVNQYTLIL AWSSEEAARY LETYKAYENM SPALIMEKPS TDYLSQVQSF 180
  181 LTSIRGINKS DSLSLLSKFG SLERALVASR DELEQLEGWG PTKVNRFLEA VQQPFMSHST 240
  241 IKRPEAINLK QT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..161] PSI-BLAST 29.69897 Crystal Structure of the Central Domain of Human ERCC1
    2 View Details [162..252] PSI-BLAST 17.69897 Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle