Protein Overview: cox13

General Information:
Name(s) found:	cox13 / SPCC1739.09c [Sanger Pombe]
Description(s) found: SHOW ONLY BEST	pir\|\|T41117 probable Cytochrome C oxidase subunit via - fission yeast (Schizosaccharomyces pombe) [NCBI NR] gi\|5921904\|sp\|O74471.1\|COX13_SCHPO RecName: Full=Cytochrome c oxidase subunit 6A, mitochondrial; AltName: Full=Cytochrome c oxidase polypeptide VIa; Flags: Precursor [NCBI NR] gi\|3581885\|emb\|CAA20783.1\| cytochrome c oxidase subunit VIa (predicted) [Schizosaccharomyces pombe] [NCBI NR] gi\|19075917\|ref\|NP_588417.1\| cytochrome c oxidase subunit VIa [Schizosaccharomyces pombe 972h-] [NCBI NR] cytochrome c oxidase subunit VIa [Sanger Pombe] (O74471) Cytochrome c oxidase polypeptide VIa, mitochondrial precursor (EC 1.9.3.1) [Swiss-Prot] Cytochrome c oxidase subunit 6A, mitochondrial OS=Schizosaccharomyces pombe GN=cox13 PE=2 SV=1 [Swiss-Prot] PUTATIVE CYTOCHROME C OXIDASE SUBUNIT VIA; SIMILAR TO S. CEREVISIAE COX13: O74471; [pompepVF.fasta] PUTATIVE CYTOCHROME C OXIDASE SUBUNIT VIA: O74471; [pompepV13] Cytochrome c oxidase polypeptide VIa, mitochondrial precursor (EC 1.9.3.1) [pompep4896] \|cox13\|\|putative cytochrome c oxidase subunit VIa [pompepnew.fasta] \|cox13\|\|cytochrome c oxidase (subunit VIa) (predicted)\|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [pombe041504.fasta] putative Cytochrome C oxidase subunit via [Schizosaccharomyces pombe]gi\|3581885\|emb\|CAA20783.1\| SPCC1739.09c [Schizosaccharomyces pombe]gi\|5921904\|sp\|O74471\|COXE_SCHPO Cytochrome c oxidase polypeptide VIa, mitochondrial precursorgi\|7492508\|pir\|\|T41117 [nrdb_11152004_Chlamydomonas] \|cox13\|\|cytochrome c oxidase subunit VIa\|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [pompep2242005.fasta] \|cox13\|\|cytochrome c oxidase subunit VIa \|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta] SPCC1739.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta] hypothetical protein SPCC1739.09c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] Cytochrome c oxidase polypeptide VIa, mitochondrial precursor [nr-271106-contam.fasta] Cytochrome c oxidase subunit 6A, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox13 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
Organism:	Schizosaccharomyces pombe
Length:	130 amino acids
Gene Ontology:
Cellular Component:	mitochondrion [IDA] mitochondrial respiratory chain complex IV [ISS]
Biological Process:	transmembrane transport [IC] regulation of catalytic activity [IC] aerobic respiration [ISS]
Molecular Function:	cytochrome-c oxidase activity [ISS] enzyme regulator activity [ISS]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSMMNRNIGF LSRTLKTSVP KRAGLLSFRA YSNEAKVNWL EEVQAEEEHA KRSSEFWKKV 60 61 TYYIGGPALI LASANAYYIY CKHQEHAKHV EDTDPGYSFE NLRFKKYPWG DGSKTLFWND 120 121 KVNHLKKDDE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..130]	PSI-BLAST	26.39794	Mitochondrial cytochrome c oxidase subunit VIa

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
cytochrome-c oxidase activity	8.55593054200713	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	8.55593054200713	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	8.55593054200713	bayes_pls_golite062009
heme-copper terminal oxidase activity	8.33310447684473	bayes_pls_golite062009
oxidoreductase activity	4.93709142475202	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	3.42266067775966	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	3.27737232830687	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.64965096433631	bayes_pls_golite062009
cation transmembrane transporter activity	2.41719119401631	bayes_pls_golite062009
ion transmembrane transporter activity	2.22093703573522	bayes_pls_golite062009
catalytic activity	0.448769452796145	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.59

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle