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Protein Overview: gi|24762405, gi|...

General Information:
Name(s) found: gi|7291647 [NCBI NR]
gi|24762405 [NCBI NR]
Description(s) found:
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  • gi|7291647|gb|AAF47069.1| CG5549 [Drosophila melanogaster] [NCBI NR]
  • gi|24762405|ref|NP_611836.1| CG5549 [Drosophila melanogaster] [NCBI NR]
  • >CG5549-PA translation from_gene[CG5549 CG5549 FBgn0034911] seq_release:3 mol_weight=123827 cds_boundaries:(2R:18,873,564..18,880,905[+]) aa_length:1201 transcript_info:[CG5549-RA seq_release:3] gene_info:[gene symbol:CG5549 FBgn0034911 gene_boundaries [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9W1J0) CG5549 protein [DrosMelano7227.FASTAC.txt]
  • (AE003462) CG5549 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG5549-PA [Drosophila melanogaster]gi|24762405|ref|NP_611836.1| CG5549-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • CG5549-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
    • Organism: Drosophila melanogaster
    Length: 1201 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [IEA]
    Biological Process: neurotransmitter transport [ISS]
    Molecular Function: neurotransmitter transporter activity [ISS]
    neurotransmitter:sodium symporter activity [IEA]
    glycine:sodium symporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQSSKSGSA GVGGVGGGGG VVCPSTAISG CASGTALIQL DATGPGAGGA GESEHERGTW  60
   61 TGRFDFLLSL LGYSVGLGNV WRFPYLCYNN GGGAFLIPFT IMLVIAGLPL MFMELSFGQY 120
  121 AALGPVAVYR RFCPLFRGLG TGMILVSAIV MLYYNLIIAW TIFYMFASFA PVLPWQNCEP 180
  181 AWSTKYCFSY AQADQCEATN GTYYLRTCHN ATSAAENNIT TLALGALKRP PAEEYFNNFV 240
  241 LGLSKGIEET GSIKLSLAAC LFLAWTIVFL CLCKGVQSSG KVVYFTALFP YVVLVILFVR 300
  301 GVTLPGASTG ILFYLTPDWK QLANAQVWGD AAVQIFFALS PAWGGLITLS SYNKFSNNCY 360
  361 NCGTFELSTK SNSRDSLIVA FCNIATSFFA GLVIFSIIGF LAHELNVDVE KVVDQGAGLA 420
  421 FIVYPEVVTR LPVSPVWAVL FFVMLLTLGL DSQFALMETV TTAILDRFPN LRQYKIWVVL 480
  481 SVAIFGYIGG LGFTTNSGMY WLQLMDKYAA NWSVLLIAIS ECILIAWIYG SQRFLNDIQG 540
  541 MIGKRSWFWN FFWGIMWRYI TPATLLFILF FNWVEYKPAK YGHYVYPMWA DAVGWIVGLL 600
  601 PVLVIFLVAF QEIWRAPMSL SFRDRIKHLL QPTAEWGPAG RPCVNLHAER YQSQNYDGVT 660
  661 NTKILIEEEA SPKQAANKKD RQLTLDVDVD VECLPLATVG KRPGAPKSMG KQGSSGNLQT 720
  721 NAKNGTHKSP TTEISPSKQP LIPSEKDNKS ANIKVLAAGT QSSGRECTTM STFAGGGEKK 780
  781 STKVNLATGA TSAAAPLASS NIATAATVAA ATKSPPAAGV APTTLVGIAA TGTTVAAAAN 840
  841 GKATLKTTIS SGAVAATAAG GNKAASVAAA TATVAAGKTP AAAMALNVAA SVKVSQTDKT 900
  901 APLKTTISAS VATAPGGTKA STAPSVATAA VVSVSSGATV PAAASKAAAP LKATAPPPSL 960
  961 AAVNATQAAK STPVAAASAL VASAPPAKST SASVAKTNTN AGSKPTATLS TCKSDAPAAA1020
 1021 ASVGVTNGKV TPSGGATSTA QPAVNQKATA AAAAQKSQGA TATATPTKTA LNQKTIVPSA1080
 1081 GSGKGDVPSS RSTDTPPPAK GAASSNISAK STKAGKTQAN ETSPTKSAVK PIKAGSTSPT1140
 1141 KAVVSKPGAS AAKTAAASAA TATATAAGSS SSNKKAATST AATLGSQAKT KGNASGAGTK1200
 1201 K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..638] PSI-BLAST 74.69897 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [639..700] deduced N/A No confident structure predictions are available.
    3 View Details [701..914] MSA 1.199993 View MSA. No confident structure predictions are available.
    4 View Details [915..1201] MSA 2.207997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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