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Protein Overview: CHMP5_RAT

General Information:
Name(s) found: CHMP5_RAT [Swiss-Prot]
Description(s) found:
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  • gi|73917772|sp|Q4QQV8.1|CHMP5_RAT RecName: Full=Charged multivesicular body protein 5; AltName: Full=Chromatin-modifying protein 5 [NCBI NR]
  • gi|70912368|ref|NP_001020581.1| chromatin modifying protein 5 [Rattus norvegicus] [NCBI NR]
  • gi|67678283|gb|AAH97963.1| Chromatin modifying protein 5 [Rattus norvegicus] [NCBI NR]
  • gi|149045651|gb|EDL98651.1| chromatin modifying protein 5 [Rattus norvegicus] [NCBI NR]
  • Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):5-65975864 [hmr_yeast5_DM3-1_pombe.fasta]
  • Tax_Id=10116 Charged multivesicular body protein 5 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Hypothetical protein [EBI-IPI_rat_3.08_07-12-2005_origrev_con.fasta]
  • Charged multivesicular body protein 5 (Chromatin-modifying protein 5) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • chromatin modifying protein 5 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Chromatin modifying protein 5 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 Gene_Symbol=Chmp5 Charged multivesicular body protein 5 [rat-ipi-250309-contam.fasta]
  • Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 [011711_HMR.fasta]
    • Organism: Rattus norvegicus
    Length: 219 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN]
    endosome [IEA]
    cytoplasm [IEA]
    membrane [IEA]
    cytosol [IEA]
    endosome membrane [IEA]
    Biological Process: lysosome organization [UNKNOWN]
    protein transport [IEA]
    endosome to lysosome transport [UNKNOWN]
    regulation of receptor recycling [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFFGKAKP KAPPPSLTDC IGTVDSRAES IDKKISRLDA ELVKYKDQIK KMREGPAKNM  60
   61 VKQKALRVLK QKRMYEQQRD NLAQQSFNME QANYTIQSLK DTKTTVDAMK LGVKEMKKAY 120
  121 KEVKIDQIED LQDQLEDMME DANEIQEALG RSYGTPELDE DDLEAELDAL GDELLADEDS 180
  181 SYLDEAASAP AIPEGVPTDT KNKDGVLVDE FGLPQIPAS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] PSI-BLAST 19.0 No description for 2gd5A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle