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Protein Overview: PRPF19

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)
View Run MIS12 No Comments Cheeseman, I.M., et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..64] FFAS03 4.28 Solution structure of the U-box in human ubiquitin conjugation factor E4A
2 View Details [65..202] Pfam 40.148742 No description for PF08606.2 was found. No confident structure predictions are available.
3 View Details [203..504] PSI-BLAST 69.69897 PAF-AH Holoenzyme: Lis1/Alfa2

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • ubiquitin-protein ligase activity
  • 9.85513873918659 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 9.6498820226444 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 8.65014213775678 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
  • 7.41958646938187 bayes_pls_golite062009
  • 4.72885746116757 bayes_pls_golite062009
  • ligase activity
  • 3.71574519150582 bayes_pls_golite062009
  • RNA binding
  • 3.00624142341404 bayes_pls_golite062009
  • binding
  • 2.70912934275371 bayes_pls_golite062009
  • transcription regulator activity
  • 2.69310847474187 bayes_pls_golite062009
  • protein binding
  • 2.53639372327734 bayes_pls_golite062009
  • nucleic acid binding
  • 2.31493818053907 bayes_pls_golite062009
  • DNA binding
  • 2.0126776192216 bayes_pls_golite062009
  • SUMO polymer binding
  • 1.98746860482839 bayes_pls_golite062009
  • transcription repressor activity
  • 1.91556680192956 bayes_pls_golite062009
  • SMAD binding
  • 1.71970331089852 bayes_pls_golite062009
  • transcription factor activity
  • 1.23220438818624 bayes_pls_golite062009
  • ubiquitin-ubiquitin ligase activity
  • 1.03473176569589 bayes_pls_golite062009
  • small conjugating protein-specific protease activity
  • 1.02238152139385 bayes_pls_golite062009
  • transcription factor binding
  • 0.987482369490121 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.937930843160931 bayes_pls_golite062009
  • ubiquitin-specific protease activity
  • 0.821040441472875 bayes_pls_golite062009
  • copper ion binding
  • 0.622487660255715 bayes_pls_golite062009
  • hydrolase activity
  • 0.552260876472222 bayes_pls_golite062009
  • cysteine-type peptidase activity
  • 0.356312424125648 bayes_pls_golite062009
  • transcription corepressor activity
  • 0.308921486763847 bayes_pls_golite062009
  • metal ion binding
  • 0.18132240757103 bayes_pls_golite062009
  • cation binding
  • 0.18132240757103 bayes_pls_golite062009
  • ion binding
  • 0.176492524214768 bayes_pls_golite062009
  • catalytic activity
  • 0.168711389690753 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.137379573046724 bayes_pls_golite062009
  • transcription activator activity
  • 0.111490592727037 bayes_pls_golite062009
  • transition metal ion binding
  • 0.0854849739238891 bayes_pls_golite062009
  • enzyme binding
  • 0.0252200602272163 bayes_pls_golite062009
  • ubiquitin thiolesterase activity
  • 0.0136579100966835 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • ubiquitin-protein ligase activity
  • 7.6976390971701 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 7.38724968585043 bayes_pls_golite062009
  • 6.67009948605948 bayes_pls_golite062009
  • acid-amino acid ligase activity
  • 6.41826641115519 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
  • 5.36089569430187 bayes_pls_golite062009
  • actin binding
  • 3.86142918698875 bayes_pls_golite062009
  • RNA binding
  • 3.77273677738815 bayes_pls_golite062009
  • GTPase activity
  • 3.23750443966606 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 3.1056443224755 bayes_pls_golite062009
  • tubulin binding
  • 2.76945430061825 bayes_pls_golite062009
  • microtubule binding
  • 2.72684103222924 bayes_pls_golite062009
  • dynein binding
  • 2.54821997913979 bayes_pls_golite062009
  • binding
  • 2.42570478946173 bayes_pls_golite062009
  • transcription regulator activity
  • 2.3610959773142 bayes_pls_golite062009
  • nucleic acid binding
  • 2.30918780727915 bayes_pls_golite062009
  • transcription repressor activity
  • 2.29049708962212 bayes_pls_golite062009
  • snoRNA binding
  • 2.27164613239345 bayes_pls_golite062009
  • protein binding
  • 2.26925404328312 bayes_pls_golite062009
  • actin filament binding
  • 2.0735069176589 bayes_pls_golite062009
  • dynactin binding
  • 1.92897254169098 bayes_pls_golite062009
  • ligase activity
  • 1.82531515493699 bayes_pls_golite062009
  • DNA binding
  • 1.71685536470455 bayes_pls_golite062009
  • structural molecule activity
  • 1.47097979074281 bayes_pls_golite062009
  • transcription corepressor activity
  • 1.41752877005447 bayes_pls_golite062009
  • transporter activity
  • 1.21549336905926 bayes_pls_golite062009
  • receptor activity
  • 1.12819778129653 bayes_pls_golite062009
  • G-protein-coupled receptor binding
  • 1.11754260203517 bayes_pls_golite062009
  • transcription factor activity
  • 1.08768505897883 bayes_pls_golite062009
  • mRNA binding
  • 1.05053985350578 bayes_pls_golite062009
  • microtubule plus-end binding
  • 1.01166033978052 bayes_pls_golite062009
  • myosin binding
  • 0.989691178611801 bayes_pls_golite062009
  • molecular transducer activity
  • 0.974380908248463 bayes_pls_golite062009
  • signal transducer activity
  • 0.974380908248463 bayes_pls_golite062009
  • protein transporter activity
  • 0.964340340346761 bayes_pls_golite062009
  • type 1 angiotensin receptor binding
  • 0.920323565472959 bayes_pls_golite062009
  • angiotensin receptor binding
  • 0.920323565472959 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 0.734793983890004 bayes_pls_golite062009
  • transcription factor binding
  • 0.489473003915035 bayes_pls_golite062009
  • dynein intermediate chain binding
  • 0.443846546939402 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
  • 0.426429095658617 bayes_pls_golite062009
  • kinase activity
  • 0.387572734234845 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.30761651528651 bayes_pls_golite062009
  • myosin heavy chain kinase activity
  • 0.231534552000461 bayes_pls_golite062009
  • protein kinase activity
  • 0.229242350006544 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
  • 0.226335610368636 bayes_pls_golite062009
  • hydrolase activity
  • 0.181211933860468 bayes_pls_golite062009
  • histone binding
  • 0.166694897714113 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
  • 0.132660456600365 bayes_pls_golite062009
  • structural constituent of cytoskeleton
  • 0.118975415284669 bayes_pls_golite062009
  • receptor binding
  • 0.0390635451962911 bayes_pls_golite062009
  • myosin II binding
  • 0.0145748031956598 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.00585398682921312 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle