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Protein Overview: RPS28A

General Information:
Name(s) found: RPS28A / YOR167C [SGD]
Description(s) found:
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  • gi|85681892|sp|Q3E7X9.1|RS28A_YEAST RecName: Full=40S ribosomal protein S28-A; AltName: Full=S33; AltName: Full=YS27 [NCBI NR]
  • pir||R3BY33 ribosomal protein S28.e.A, cytosolic - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|6324741|ref|NP_014810.1| Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein; Rps28ap [Saccharomyces cerevisiae] [NCBI NR]
  • gi|51012943|gb|AAT92765.1| YLR264W [Saccharomyces cerevisiae] [NCBI NR]
  • gi|4415|emb|CAA24958.1| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1420411|emb|CAA99373.1| RPS33A [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1293728|gb|AAB47414.1| Rps33p [NCBI NR]
  • 40S ribosomal protein S28-A OS=Saccharomyces cerevisiae GN=RPS28A PE=1 SV=1 [Swiss-Prot]
  • RPS28A 40S small subunit ribosomal protein S28.e.c15 [mips]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein [SGD]
  • Chr XV from 649007-648804, reverse complement [hmr_yeast5_DM3-1_pombe.fasta]
  • Chr XV from 648803-649006, reverse complement [yeastorf3.fasta]
  • Chr XV from 648804-649007, reverse complement [yeastorf4.fasta]
  • RPS28A, Chr XV from 648803-649006, reverse complement [yeast_orfs2]
  • RPS28A SGDID:S0005693, Chr XV from 649007-648804, reverse complement, Verified ORF [yeastflysequest.fasta]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Ap and has similarity to rat S28 ribosomal protein [Saccharomyces cerevisiae]gi|51012943|gb|AAT92765.1| YLR264W [Saccharomyces cerevisiae]gi|1420411|emb|CAA99373.1| RPS33A [nrdb_11152004_Chlamydomonas]
  • RPS28A SGDID:S000005693, Chr XV from 649007-648804, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Ap and has similarity to rat S28 ribosomal protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • RPS28A SGDID:S000005693, Chr XV from 649008-648805, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein" [yeast-contam.fasta]
  • Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein; Rps28ap [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • YLR264W [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • RPS33A [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • 40S ribosomal protein S28-A (S33) (YS27) [nr-271106-contam.fasta]
  • Rps33p [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • 40S ribosomal protein S28-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS28A PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • RPS28A SGDID:S000005693, Chr XV from 649007-648804, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps28Bp and has similarity to rat S28 ribosomal protein" [yeast-030211-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 67 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    cytoplasm [IEA]
    cytosolic small ribosomal subunit [IDA]
    ribonucleoprotein complex [IEA]
    ribosome [IEA]
    Biological Process: translation [TASLink to PubMed article]
    Molecular Function: structural constituent of ribosome [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNKTPVTLA KVIKVLGRTG SRGGVTQVRV EFLEDTSRTI VRNVKGPVRE NDILVLMESE  60
   61 REARRLR

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details (MIPS) Mewes HW, et al. (2004) ASC1 RPS0A RPS0B RPS10A RPS10B RPS11B, RPS11A RPS12 RPS13 RPS14A RPS14B RPS15 RPS16A, RPS16B RPS17A RPS17B RPS18A, RPS18B RPS19A RPS19B RPS1A RPS1B RPS2 RPS20 RPS21A RPS21B RPS22A RPS22B RPS23A, RPS23B RPS24A, RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS27B RPS28A RPS28B RPS29A RPS29B RPS3 RPS30B, RPS30A RPS31 RPS4B, RPS4A RPS5 RPS6B, RPS6A RPS7A RPS7B RPS8A, RPS8B RPS9A RPS9B
    View Details Qiu et al. (2008) APT1 ASC1 RKI1 RPL10 RPL11A RPL11B RPL12B, RPL12A RPL13A RPL13B RPL14A RPL14B RPL15A RPL15B RPL16A RPL16B RPL17A RPL17B RPL18B, RPL18A RPL19A, RPL19B RPL1A, RPL1B RPL20A RPL20B RPL21A RPL21B RPL22A RPL22B RPL23A, RPL23B RPL24A RPL24B RPL25 RPL26A RPL26B RPL27A RPL27B RPL28 RPL29 RPL2A, RPL2B RPL3 RPL30 RPL31A RPL31B RPL32 RPL33A RPL33B RPL34A RPL34B RPL35A, RPL35B RPL36A RPL36B RPL37A RPL37B RPL38 RPL39 RPL40B, RPL40A RPL41B, RPL41A RPL42B, RPL42A RPL43A, RPL43B RPL4A RPL4B RPL5 RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPL9A RPL9B RPP0 RPP1A RPP1B RPP2A RPP2B RPS0A RPS0B RPS10A RPS10B RPS11B, RPS11A RPS12 RPS13 RPS14A RPS14B RPS15 RPS16A, RPS16B RPS17A RPS17B RPS18A, RPS18B RPS19A RPS19B RPS1A RPS1B RPS2 RPS20 RPS21A RPS21B RPS22A RPS22B RPS23A, RPS23B RPS24A, RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS27B RPS28A RPS28B RPS29A RPS29B RPS3 RPS30B, RPS30A RPS31 RPS4B, RPS4A RPS5 RPS6B, RPS6A RPS7A RPS7B RPS8A, RPS8B RPS9A RPS9B RSM26 VAR1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen LSM4 RPS28A 2 Uetz P, et al. (2000)
    View Screen LSM8 RPS28A 2 Uetz P, et al. (2000)
    View Screen RPS28A YAL018C 2 Unpublished Fields Lab Data
    View Screen RPS28A LST4 2 Unpublished Fields Lab Data
    View Screen RPS28A RPS28A 2 Unpublished Fields Lab Data
    View Screen LSM2 RPS28A 2 Uetz P, et al. (2000)

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data RPS28A Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..67] Pfam 43.522879 Ribosomal protein S28e No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.45319063235379 bayes_pls_golite062009
  • structural molecule activity
    		•  6.87843523680097 bayes_pls_golite062009
  • translation elongation factor activity
    		•  3.58178742491041 bayes_pls_golite062009
  • RNA binding
    		•  3.30183895019873 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.61313484113692 bayes_pls_golite062009
  • binding
    		•  2.20683882867211 bayes_pls_golite062009
  • DNA binding
    		•  1.87254683997276 bayes_pls_golite062009
    		• 1.49823328757628 bayes_pls_golite062009
  • translation regulator activity
    		•  1.46320772716954 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  1.40718318783582 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.35845277283398 bayes_pls_golite062009
  • translation initiation factor activity
    		•  1.27539679024898 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.10289736160471 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.96886436248958 bayes_pls_golite062009
  • mRNA binding
    		•  0.66243778931831 bayes_pls_golite062009
  • ribonuclease activity
    		•  0.498439111185072 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.438266295385131 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.39131721416336 bayes_pls_golite062009
  • ligase activity
    		•  0.346041081217685 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.259353733157995 bayes_pls_golite062009
  • nuclease activity
    		•  0.17660139576327 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.151650064901878 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  0.0717589400404304 bayes_pls_golite062009
  • protein binding
    		•  0.0528188351789111 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle