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Protein Overview: SMC4

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CAB4 No Comments Hazbun TR, et al. (2003)
View Run RIX7 No Comments Hazbun TR, et al. (2003)
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run RLF2 phosphorylation data - cascade search Green EM, et al (2005)
View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
View Run MLP2 #30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen NAF1 SMC4 1 Hazbun TR, et al. (2003)

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data SMC4 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..135] deduced N/A Confident ab initio structure predictions are available.
2 View Details [136..213] PSI-BLAST 4.30103 Rad50
3 View Details [214..511] PSI-BLAST 94.045757 Heavy meromyosin subfragment
4 View Details [512..655] PSI-BLAST 3.0 Colicin Ia; Colicin Ia, N-terminal domain
5 View Details [656..691]
[714..746]
PSI-BLAST 9.69897 Smc hinge domain
6 View Details [692..713]
[747..750]
[766..784]
[828..854]
PSI-BLAST 9.69897 Smc hinge domain
7 View Details [751..765]
[785..827]
PSI-BLAST 9.69897 Smc hinge domain
8 View Details [855..918] PSI-BLAST 10.221849 Tropomyosin
9 View Details [919..1131] PSI-BLAST 10.221849 Tropomyosin
10 View Details [1132..1219] PSI-BLAST 3.522879 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
11 View Details [1220..1418] PSI-BLAST 170.751666 Smc head domain

Functions predicted (by domain):

# Gene Ontology predictions
1 No functions predicted.
2 No functions predicted.
3 No functions predicted.
4 No functions predicted.
5
Term Confidence Notes
  • binding
  • 2.87197012801422 bayes_pls_golite062009
  • protein binding
  • 1.11054097120015 bayes_pls_golite062009
  • protein heterodimerization activity
  • 0.87613701344509 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.655291890141256 bayes_pls_golite062009
  • DNA secondary structure binding
  • 0.597643104953011 bayes_pls_golite062009
  • protein dimerization activity
  • 0.423916142680929 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.340360347691162 bayes_pls_golite062009
  • pyrophosphatase activity
  • 0.287295057420232 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.273916899375488 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.271570433187831 bayes_pls_golite062009
  • ATPase activity
  • 0.142237490738159 bayes_pls_golite062009
  • DNA binding
  • 0.0749274471142563 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10 No functions predicted.
    11 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle