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Protein Overview: NSR1

General Information:
Name(s) found: NSR1 / YGR159C [SGD]
Description(s) found:
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  • gi|6321599|ref|NP_011675.1| Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis; Nsr1p [Saccharomyces cerevisiae] [NCBI NR]
  • gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces cerevisiae] [NCBI NR]
  • gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae] [NCBI NR]
  • gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein; AltName: Full=p67 [NCBI NR]
  • gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae] [NCBI NR]
  • pir||A39205 nuclear localization sequence-binding protein NSR1 - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1 [Swiss-Prot]
  • NSR1 Nuclear localization sequence binding protein, required for pre-rRNA processing and ribosome biogenesis [mips]
  • Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis [SGD]
  • NSR1, Chr VII from 806407-807651, reverse complement [yeast_orfs2]
  • Chr VII from 806407-807651, reverse complement [yeastorf3.fasta]
  • Chr VII from 806414-807658, reverse complement [yeastorf4.fasta]
  • Chr VII from 807658-806414, reverse complement [yeastorf5.fasta]
  • (P27476) Nuclear localization sequence binding protein (P67) [4932.FASTACCERV.txt]
  • NSR1 SGDID:S0003391, Chr VII from 807659-806415, reverse complement, Verified ORF [yeastflysequest.fasta]
  • NSR1 SGDID:S0003391, Chr VII from 807661-806417, reverse complement, Verified ORF [10112005cervSGD.fasta]
  • Nsr1p [Saccharomyces cerevisiae]gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces cerevisiae]gi|1014 [nrdb_11152004_Chlamydomonas]
  • NSR1 SGDID:S000003391, Chr VII from 807661-806417, reverse complement, Verified ORF, "Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • NSR1 [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Nuclear localization sequence-binding protein (p67) [nr-271106-contam.fasta]
  • Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis; Nsr1p [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • nuclear localization sequence binding protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • NSR1 SGDID:S000003391, Chr VII from 807656-806412, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis" [yeast-030211-contam.fasta]
  • NSR1 SGDID:S000003391, Chr VII from 807656-806412, Genome Release 64-2-1, reverse complement, Verified ORF, "Nucleolar protein that binds nuclear localization sequences; required for pre-rRNA processing and ribosome biogenesis" [20141208_orf_trans.fasta]
  • YGR159C SGDID:S000003391, Chr VII from 807656-806412, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 414 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mitochondrion [IDALink to PubMed articleLink to PubMed article]
    nucleolus [TASLink to PubMed article]
    Biological Process: telomere maintenance [IMPLink to PubMed article]
    ribosomal small subunit assembly [TASLink to PubMed article]
    rRNA processing [TASLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]
    single-stranded DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTTKVKGN KKEVKASKQA KEEKAKAVSS SSSESSSSSS SSSESESESE SESESSSSSS  60
   61 SSDSESSSSS SSDSESEAET KKEESKDSSS SSSDSSSDEE EEEEKEETKK EESKESSSSD 120
  121 SSSSSSSDSE SEKEESNDKK RKSEDAEEEE DEESSNKKQK NEETEEPATI FVGRLSWSID 180
  181 DEWLKKEFEH IGGVIGARVI YERGTDRSRG YGYVDFENKS YAEKAIQEMQ GKEIDGRPIN 240
  241 CDMSTSKPAG NNDRAKKFGD TPSEPSDTLF LGNLSFNADR DAIFELFAKH GEVVSVRIPT 300
  301 HPETEQPKGF GYVQFSNMED AKKALDALQG EYIDNRPVRL DFSSPRPNND GGRGGSRGFG 360
  361 GRGGGRGGNR GFGGRGGARG GRGGFRPSGS GANTAPLGRS RNTASFAGSK KTFD

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) NSR1 PRP43 RPL15A RPL4B RPS1B RPS4B, RPS4A UTP22 YGR054W
    View Details Hazbun TR, et al. (2003) GCD6 NOP9 NSR1 SNU13
    View Details (MIPS) Mewes HW, et al. (2004) DRS1 GAR1 IFH1 NOP1 NPL3 NSR1 POP1 POP2 RAT1 RNT1 RRP3 SBP1 SNM1 SRD1 UTP10 UTP11 UTP13 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9 YME2
    View Details Ho Y, et al. (2002) GLC7 HXT6 KOG1 NET1 NOP6 NSR1 PMA1 PMA2 PPZ2 REG1 RSE1 RVB1 SDS22 SNF4 YGR130C
    View Details Qiu et al. (2008) BRX1 CIC1 DBP3 DBP6 DBP7 DBP8 DHR2 DRS1 ECM16 ENP1 ERB1 FAL1 FOB1 GAR1 HCA4 IFH1 KRI1 KRR1 MAK11 MAK5 MRD1 MTR4 NAN1 NOP12 NOP13 NOP15 NOP2 NOP4 NOP7 NOP8 NOP9 NSR1 NUG1 PRP43 PUF6 PWP1 PWP2 PXR1 RNT1 RRB1 RRP1 RRP3 RRP5 RRP9 SOF1 SPB4 SSF1 TIF6 TRF5 UTP10 UTP11 UTP13 UTP15 UTP18 UTP4 UTP5 UTP6 UTP7 UTP8 UTP9

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run NAF1 No Comments Hazbun TR, et al. (2003)
    View Run TOR1 No Comments Reinke A, et al. (2004)
    View Run NOP9 No Comments Hazbun TR, et al. (2003)
    View Run NOP9 No Comments Hazbun TR, et al. (2003)
    View Run LST8 No Comments Reinke A, et al. (2004)
    View Run MIH1 control 1 McCusker D, et al (2007)
    View Run MIH1 control 2 McCusker D, et al (2007)
    View Run RLF2 cac1: TAP-tagged Green EM, et al (2005)
    View Run ASF1 sample 3928 - Asf1-S-TEV-ZZ (in hir3delta mutant) Green EM, et al (2005)
    View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
    View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
    View Run BOI1 Sample boi 1 with ha tag from october 2005 McCusker D, et al (2007)
    View Run MLP2 #20 Asynchronous Prep1-TiO2 Phosphopeptide enrichment, PartB Keck JM, et al. (2011)
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #21 Asynchronous Prep2-IMAC Phosphopeptide enrichment A1 Keck JM, et al. (2011)
    View Run MLP2 #22 Asynchronous Prep2-IMAC Phosphopeptide enrichment B1-2 Keck JM, et al. (2011)
    View Run MLP2 #32 Asynchronous Prep-No Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #03 Alpha Factor Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)
    View Run MLP2 #02 Alpha Factor Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
    View Run MLP2 #11 Mitotic Prep1-TiO2 enriched, new search criteria Keck JM, et al. (2011)
    View Run MLP2 #08 Alpha Factor Prep4-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data NSR1 and NOP56 Huh WK, et al. (2003)
    View Data NSR1 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] ORFEUS 8.46 No description for 1ldvA was found.
    2 View Details [159..246] PSI-BLAST 189.156545 Poly(A)-binding protein
    3 View Details [247..414] PSI-BLAST 189.156545 Poly(A)-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.925882442647253 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.412705465356557 bayes_pls_golite062009
  • RNA binding
    		•  0.0622892880461364 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle