Protein Overview: PEX29

General Information:
Name(s) found:	PEX29 / YDR479C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|927746\|gb\|AAB64918.1\| Ydr479cp; CAI: 0.11 [Saccharomyces cerevisiae] [NCBI NR] gi\|74583414\|sp\|Q03370.1\|PEX29_YEAST RecName: Full=Peroxisomal membrane protein PEX29; AltName: Full=Peroxin-29 [NCBI NR] gi\|6320687\|ref\|NP_010767.1\| Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and [NCBI NR] pir\|\|S69646 hypothetical protein YDR479c - yeast (Saccharomyces cerevisiae) [NCBI NR] Peroxisomal membrane protein PEX29 OS=Saccharomyces cerevisiae GN=PEX29 PE=1 SV=1 [Swiss-Prot] PEX29 Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number [mips] Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p [SGD] YDR479C, Chr IV from 1415197-1416861, reverse complement [yeast_orfs2] Chr IV from 1415197-1416861, reverse complement [yeastorf3.fasta] Chr IV from 1415196-1416860, reverse complement [yeastorf4.fasta] Chr IV from 1416862-1415198, reverse complement [yeastorf5.fasta] >Q03370 (Q03370) D8035.22P [4932.FASTACCERV.txt] PEX29 SGDID:S0002887, Chr IV from 1416862-1415198, reverse complement, Verified ORF [yeastflysequest.fasta] PEX29 SGDID:S0002887, Chr IV from 1416864-1415200, reverse complement, Verified ORF [10112005cervSGD.fasta] Ydr479cp; CAI: 0.11 [Saccharomyces cerevisiae]gi\|6320687\|ref\|NP_010767.1\| Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those medi [nrdb_11152004_Chlamydomonas] (Q03370) Ydr479cp [cerv4932.FASTAC] PEX29 SGDID:S000002887, Chr IV from 1416864-1415200, reverse complement, Verified ORF, "Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] PEX29 SGDID:S000002887, Chr IV from 1416866-1415202, reverse complement, Verified ORF, "Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream [yeast-contam.fasta] PEX29 SGDID:S000002887, Chr IV from 1416867-1415203, reverse complement, Verified ORF, "Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta] Peroxisomal membrane protein PEX29 (Peroxin-29) [nr-271106-contam.fasta] Ydr479cp; CAI: 0.11 [Saccharomyces cerevisiae] [nr-271106-contam.fasta] Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; Pex29p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] PEX29 SGDID:S000002887, Chr IV from 1416867-1415203, reverse complement, Verified ORF, "Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p" [yeast-bovrabprots.fasta] PEX29 SGDID:S000002887, Chr IV from 1416866-1415202, reverse complement, Verified ORF, "Peroxisomal integral membrane protein, involved in regulation of peroxisome size and number; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p" [yeast-contam_custom.fasta] [chemostatdb.fasta] Peroxisomal membrane protein PEX29 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX29 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] PEX29 SGDID:S000002887, Chr IV from 1416874-1415210, Genome Release 64-1-1, reverse complement, Verified ORF, "Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p" [yeast-030211-contam.fasta] PEX29 SGDID:S000002887, Chr IV from 1416874-1415210, Genome Release 64-2-1, reverse complement, Verified ORF, "Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p; forms ER foci upon DNA replication stress" [20141208_orf_trans.fasta] YDR479C SGDID:S000002887, Chr IV from 1416874-1415210, Genome Release 64-1-1, reverse complement, Verified ORF, "Peroxisomal integral membrane peroxin, involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	554 amino acids
Gene Ontology:
Cellular Component:	peroxisomal membrane [IDA]
Biological Process:	peroxisome organization [IDA][IGI][IMP]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVTNFFWN DTYNAGTPTR STLKGKKVQN GIDGKSQAKK ESISSGSRTS DPTRGSLPSS  60
   61 SGQPTSGGGF PSTSNIQKMM ADTLVEKIIK MALPPSSKTA VDTIHHRMVA GKERPKLSVQ 120
  121 ITSRNFIQMN SRLGVPFMIM DELIKILNWT NPAYTVSIMF LYTLIILKPF QMLSSLPIFY 180
  181 LLFCVMVPQY LYIHKPNPTS YLDNNQTPAQ GPPLRRPEVP KPVPELSQEF VLNLTDLQNH 240
  241 MLLYVKFYDF TLLILQKFAF FTNEAISSFY FIVLLIIATL NFLYMDKFIK LIPMRPVLIL 300
  301 LGWGFFIASH PSNREYLLTK LNSEETRLKT LTISTNLESK ILQHLKLIEA REHRLVMIFE 360
  361 IQKYLPEYKE WRPVGFSDDD YSLFSSLRIY QRRIEENSVK SLEEIEPPKD WEWEANSHWV 420
  421 LDLDPKEWVE DEFIQYVEID SETKWVYDLN LDGQRGSYRR RMWTNSCVRK KLDSGISSNL 480
  481 GEEEVVNPLR EETYRQGVHG VTKGSMSGGL THSSDDDRAD EESINGTIPN LNNIDADASY 540
  541 PSIEELTDTL NSTI

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Qiu et al. (2008)		INP2 PEX14 PEX29

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	MLP2	#32 Asynchronous Prep-No Phosphopeptide enrichment	Keck JM, et al. (2011)
View Run	MLP2	#03 Alpha Factor Prep1-TiO2 Flowthrough	Keck JM, et al. (2011)
View Run	MLP2	#12 Mitotic Prep1-TiO2 Flowthrough	Keck JM, et al. (2011)
View Run	MLP2	#30 Asynchronous Prep6-TiO2 Phosphopeptide enrichment	Keck JM, et al. (2011)
View Run	MLP2	#11 Mitotic Prep1-TiO2 enriched, new search criteria	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

	BAIT	PREY	HITS	PUBLICATION
View Screen	PHS1	PEX29	2	Unpublished Fields Lab Data
View Screen	YIF1	PEX29	2	Unpublished Fields Lab Data

Microscopy / Localization Data

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	PROTEIN(S)	PUBLICATION
View Data	PEX29	Huh WK, et al. (2003)

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..496]	MSA	1.002856	View MSA. No confident structure predictions are available.
2	View Details	[497..554]	deduced	N/A	No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2