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Protein Overview: VPS41

Protein Complex Data

Mass Spectrometry Data

The following runs contain data for this protein:

  BAIT COMMENTS PUBLICATION
View Run CEP3 sample cbf3 from feb 2005 Sandall S, et all (2006)
View Run ZDS1 Sample 2- cpn2 from june 2005 McCusker D, et al (2007)
View Run ZDS1 Sample 3 - cpn + atp, from june 2005 McCusker D, et al (2007)
View Run VAM3 sample: hx3 Hao Xu, et al. (2010)
View Run VAM3 Sample: HX11 - both fusion and trans-SNARE complex formation take place. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX12 - trans-SNARE complex formation and fusion are inhibited (control). Hao Xu, et al. (2010)
View Run VAM3 Sample: HX13 - trans-SNARE complex forms but fusion is blocked. Hao Xu, et al. (2010)
View Run VAM3 Sample: HX14 - mixture in detergent (control). Hao Xu, et al. (2010)
View Run VAM3 hx23: mixture in detergent (control) Investigating Vam3p, Nyv1p and their partners in trans-SNARE complex Hao Xu, et al. (2010)
View Run MLP2 #31 Asynchronous Prep (Protease cleavage) Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data VPS41 Huh WK, et al. (2003)

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..375] PSI-BLAST 57.0 Tup1, C-terminal domain
2 View Details [376..478] PSI-BLAST 68.30103 beta1-subunit of the signal-transducing G protein heterotrimer
3 View Details [479..992] ORFEUS 12.83 Clathrin heavy chain proximal leg segment

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • cytoskeletal protein binding
  • 2.20122168933317 bayes_pls_golite062009
  • binding
  • 1.99637157021613 bayes_pls_golite062009
  • actin binding
  • 1.40054662654509 bayes_pls_golite062009
  • protein binding
  • 1.21879977456466 bayes_pls_golite062009
  • transporter activity
  • 1.21549336905926 bayes_pls_golite062009
  • tubulin binding
  • 1.10875870970504 bayes_pls_golite062009
  • microtubule binding
  • 1.03769395387791 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 0.734793983890004 bayes_pls_golite062009
  • nucleic acid binding
  • 0.624115832843391 bayes_pls_golite062009
  • hydrolase activity
  • 0.36638536879917 bayes_pls_golite062009
  • transcription repressor activity
  • 0.328276176504109 bayes_pls_golite062009
  • transcription regulator activity
  • 0.282387003961579 bayes_pls_golite062009
  • dynein binding
  • 0.180120691665679 bayes_pls_golite062009
  • structural molecule activity
  • 0.0588151480189092 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.00585398682921312 bayes_pls_golite062009
    2
    Term Confidence Notes
  • cytoskeletal protein binding
  • 2.20122168933317 bayes_pls_golite062009
  • binding
  • 1.99637157021613 bayes_pls_golite062009
  • actin binding
  • 1.40054662654509 bayes_pls_golite062009
  • protein binding
  • 1.21879977456466 bayes_pls_golite062009
  • transporter activity
  • 1.21549336905926 bayes_pls_golite062009
  • tubulin binding
  • 1.10875870970504 bayes_pls_golite062009
  • microtubule binding
  • 1.03769395387791 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 0.734793983890004 bayes_pls_golite062009
  • nucleic acid binding
  • 0.624115832843391 bayes_pls_golite062009
  • hydrolase activity
  • 0.36638536879917 bayes_pls_golite062009
  • transcription repressor activity
  • 0.328276176504109 bayes_pls_golite062009
  • transcription regulator activity
  • 0.282387003961579 bayes_pls_golite062009
  • dynein binding
  • 0.180120691665679 bayes_pls_golite062009
  • structural molecule activity
  • 0.0588151480189092 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.00585398682921312 bayes_pls_golite062009
    3
    Term Confidence Notes
  • protein transporter activity
  • 2.99345877012947 bayes_pls_golite062009
  • binding
  • 2.53151481871847 bayes_pls_golite062009
  • transporter activity
  • 2.3766833486706 bayes_pls_golite062009
  • substrate-specific transporter activity
  • 2.12926593993985 bayes_pls_golite062009
  • cytoskeletal protein binding
  • 1.67265990792668 bayes_pls_golite062009
  • protein binding
  • 1.61131270705552 bayes_pls_golite062009
  • transmembrane transporter activity
  • 1.2724388835449 bayes_pls_golite062009
  • protein transmembrane transporter activity
  • 1.12112006227201 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
  • 1.04982314606251 bayes_pls_golite062009
  • nucleic acid binding
  • 1.0110931222658 bayes_pls_golite062009
  • actin binding
  • 0.864076688656138 bayes_pls_golite062009
  • hydrolase activity
  • 0.648465506487331 bayes_pls_golite062009
  • signal sequence binding
  • 0.279693431859311 bayes_pls_golite062009
  • active transmembrane transporter activity
  • 0.260663498540354 bayes_pls_golite062009
  • ion transmembrane transporter activity
  • 0.256036243669218 bayes_pls_golite062009
  • structural molecule activity
  • 0.244712400498315 bayes_pls_golite062009
  • nuclear localization sequence binding
  • 0.241630311762028 bayes_pls_golite062009
  • RNA binding
  • 0.235569865745441 bayes_pls_golite062009
  • primary active transmembrane transporter activity
  • 0.234271600707329 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
  • 0.225395946682209 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
  • 0.186601655036333 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
  • 0.183072614802483 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
  • 0.182751938544977 bayes_pls_golite062009
  • transcription regulator activity
  • 0.111971004877048 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
  • 0.109435859778099 bayes_pls_golite062009
  • clathrin binding
  • 0.0923079381755934 bayes_pls_golite062009
  • pyrophosphatase activity
  • 0.0728493557966827 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
  • 0.0641324729536009 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
  • 0.0615190129942244 bayes_pls_golite062009
  • cation transmembrane transporter activity
  • 0.0475280280823402 bayes_pls_golite062009
  • signal transducer activity
  • 0.0143632526449453 bayes_pls_golite062009
  • molecular transducer activity
  • 0.0143632526449453 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle