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Protein Overview: gi|24345880, gi|...

General Information:
Name(s) found: gi|24372016 [NCBI NR]
gi|24345880 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24372016|ref|NP_716058.1| N-acetyl-anhydromuranmyl-L-alanine amidase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345880|gb|AAN53503.1|AE015490_4 AmpD protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan metabolic process [ISSLink to PubMed article]
    Molecular Function: N-acetylmuramoyl-L-alanine amidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFEFGWFTA ARRCESPHFN QRPFGEISLL VIHNISLPAG CFGLPYIDQL FQGCLDTNAD  60
   61 NSFADLAGLK VSAHFLIRRD GECVQYVSCD DRAWHAGVSR YGERENCNDF SIGIELEGTD 120
  121 TEPYTAAQYQ QLVELTQALL AQYSSLSAER IVGHCDIAPV RKTDPGPSFD WERYLTKLRD 180
  181 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 51.0 AmpD protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • N-acetylmuramoyl-L-alanine amidase activity
    		•  5.57894011339111 bayes_pls_golite062009
  • peptidoglycan binding
    		•  3.64373264470797 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  3.57069794427757 bayes_pls_golite062009
  • catalytic activity
    		•  0.998996028203371 bayes_pls_golite062009
  • hydrolase activity
    		•  0.83639977289922 bayes_pls_golite062009
  • pattern binding
    		•  0.274968943680442 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.0631264776586918 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle