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Protein Overview: gi|20260142, gi|...

General Information:
Name(s) found: gi|22136092 [NCBI NR]
gi|20260142 [NCBI NR]
gi|18390865 [NCBI NR]
gi|11993877 [NCBI NR]
Description(s) found:
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  • gi|22136092|gb|AAM91124.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20260142|gb|AAM12969.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18390865|ref|NP_563808.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11993877|gb|AAG42922.1|AF329505_1 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|22136092|gb|AAM91124.1| unknown protein [Arabidopsis thaliana]gi|20260142|gb|AAM12969.1| unknown protein [Arabidopsis thaliana]gi|18390865|ref|NP_563808.1| aspartyl protease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr1:2577116-2580578 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr1:2577119-2580581 REVERSE LENGTH=492 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease-like protein OS=Arabidopsis thaliana GN=At1g08210 PE=2 SV=1 [ARATH-contam.fasta]
  • Aspartyl protease family protein OS=Arabidopsis thaliana GN=At1g08210 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 492 amino acids

    Gene Ontology:
    Cellular Component: plant-type cell wall [IDA]
    anchored to membrane [TAS]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDSPAGVI IIAAVLLLAA TTLACGSDAV LKLERLIPPN HELGLTELRA FDSARHGRLL  60
   61 QSPVGGVVNF PVDGASDPFL VGLYYTKVKL GTPPREFNVQ IDTGSDVLWV SCTSCNGCPK 120
  121 TSELQIQLSF FDPGVSSSAS LVSCSDRRCY SNFQTESGCS PNNLCSYSFK YGDGSGTSGY 180
  181 YISDFMSFDT VITSTLAINS SAPFVFGCSN LQSGDLQRPR RAVDGIFGLG QGSLSVISQL 240
  241 AVQGLAPRVF SHCLKGDKSG GGIMVLGQIK RPDTVYTPLV PSQPHYNVNL QSIAVNGQIL 300
  301 PIDPSVFTIA TGDGTIIDTG TTLAYLPDEA YSPFIQAVAN AVSQYGRPIT YESYQCFEIT 360
  361 AGDVDVFPQV SLSFAGGASM VLGPRAYLQI FSSSGSSIWC IGFQRMSHRR ITILGDLVLK 420
  421 DKVVVYDLVR QRIGWAEYDC SLEVNVSASR GGRSKDVINT GQWRESGSES FNRSYYLLQL 480
  481 VVFLVHLFAR FL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..492] PSI-BLAST 76.69897 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle