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Protein Overview: gi|27754243, gi|...

General Information:
Name(s) found: gi|27754243 [NCBI NR]
gi|18409320 [NCBI NR]
Description(s) found:
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  • gi|27754243|gb|AAO22575.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18409320|ref|NP_566948.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • unknown protein [Arabidopsis thaliana]gi|18409320|ref|NP_566948.1| aspartyl protease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr3:19064459-19067131 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • aspartic-type endopeptidase/ pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr3:19053480-19056152 REVERSE LENGTH=529 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease family protein OS=Arabidopsis thaliana GN=At3g51330 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 529 amino acids

    Gene Ontology:
    Cellular Component: anchored to membrane [TAS]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVARQVFVL LSLLVVCWGL ERCEASGKFS FEVHHMFSDR VKQSLGLDDL VPEKGSLEYF  60
   61 KVLAQRDRLI RGRGLASNNE ETPITFMRGN RTISIDLLGF LHYANVSVGT PATWFLVALD 120
  121 TGSDLFWLPC NCGSTCIRDL KEVGLSQSRP LNLYSPNTSS TSSSIRCSDD RCFGSSRCSS 180
  181 PASSCPYQIQ YLSKDTFTTG TLFEDVLHLV TEDEGLEPVK ANITLGCGKN QTGFLQSSAA 240
  241 VNGLLGLGLK DYSVPSILAK AKITANSFSM CFGNIIDVVG RISFGDKGYT DQMETPLLPT 300
  301 EPSPTYAVSV TEVSVGGDAV GVQLLALFDT GTSFTHLLEP EYGLITKAFD DHVTDKRRPI 360
  361 DPELPFEFCY DLSPNKTTIL FPRVAMTFEG GSQMFLRNPL FIVWNEDNSA MYCLGILKSV 420
  421 DFKINIIGQN FMSGYRIVFD RERMILGWKR SDCFEDESLE STTPPPPETE APSPSASTPL 480
  481 PSLLPPPAAA TPPQIDPRNS TRNSGTGTAA NLVPLASQLL LLLPLLAFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..529] PSI-BLAST 75.30103 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle