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Protein Overview: gi|107738200, gi...

General Information:
Name(s) found: gi|51968508 [NCBI NR]
gi|18417773 [NCBI NR]
gi|107738200 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|51968508|dbj|BAD42946.1| ribosomal protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|18417773|ref|NP_568321.1| RNA-binding S4 domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|107738200|gb|ABF83660.1| At5g15750 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 182 amino acids

    Gene Ontology:
    Cellular Component: cytosolic small ribosomal subunit [IDA]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA][ISS]
    rRNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLKYHEKK LIKKVNFLEW KREGNHRENE ITYRYHMGSR DDYKKYSGLC RMVQKLTNIM  60
   61 KQMDPADPFR IQMTDMLLEK LYNMGVIPTR KSLTLTERLS VSSFCRRRLS TVLVHLKFAE 120
  121 HHKEAVTYIE QGHVRVGPET ITDPAFLVTR NMEDFITWVD SSKIKRKVLE YNDTLDDYDM 180
  181 LA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 36.30103 No description for 1vs5D was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  8.55021676512691 bayes_pls_golite062009
  • structural molecule activity
    		•  7.96033008326331 bayes_pls_golite062009
  • RNA binding
    		•  3.32539644009264 bayes_pls_golite062009
  • binding
    		•  1.62697242685211 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.5099313198888 bayes_pls_golite062009
  • protein binding
    		•  0.255198885489521 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle