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Protein Overview: AT18A_ARATH

General Information:
Name(s) found: AT18A_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|240255690|ref|NP_567132.4| AtATG18a [Arabidopsis thaliana] [NCBI NR]
  • gi|16323362|gb|AAL15394.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] [NCBI NR]
  • gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] [NCBI NR]
  • Autophagy-related protein 18a OS=Arabidopsis thaliana GN=ATG18A PE=1 SV=1 [Swiss-Prot]
  • AT3g62770/F26K9_200 [Arabidopsis thaliana]gi|14517420|gb|AAK62600.1| AT3g62770/F26K9_200 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • AT3g62770/F26K9_200 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23218858-23221110 REVERSE LENGTH=425 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: autophagy [IMP]
    senescence [IEP][IMP]
    response to starvation [IEP][IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ  60
   61 SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI LNCDPFREIF RRDFDRGGGV 120
  121 AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV 180
  181 VLEQKIFVYN FSDLKLMHQI ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR 240
  241 TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA 300
  301 FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF 360
  361 SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC QFDPVNGGEM SQLEYHNCLK 420
  421 PPSVF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 54.39794 F-box/WD-repeat protein 1 (beta-TRCP1)
    2 View Details [66..425] PSI-BLAST 67.221849 No description for 2ovpB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle