YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|385209
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHQQQQQQQ QQQQQHKQVR YRNLRRNVEI GAKKIWLPLI IFLSLQVALV CADDVEVVKA  60
   61 IAGGPDDELT IALGDHENEL DQMAQESEQE QQAQAQQQQQ QQQQQQQQQQ QQQHQQLPQI 120
  121 QMQLPQSVPK VQVHYQHNMP QPPPNVALTM RNNHQNIPLS FGQPFGPPPP PGAQFYKGPP 180
  181 PPQLQQRPQP PPQLQLQVQP QQQQQQQQQH TQQQGQQQQV QVPDLSVGGS SNNEIWAAPV 240
  241 QDMPKIVSLD VKCEKNGMKV FVQFDKPFNG IVFSKGHYSN MNCVHLPSGL GRSSASFDIG 300
  301 LHECGTAGNT DNYGQGYGHE AGSTGAGTYF ENIIVIQYDP QVQEVWDQAR KLRCTWHDQY 360
  361 EKSVTFRPFP VDMLDVVRAD FAGDNVGCWM QIQVGKGPWA SEVSGLVKIG QTMTMVLAIK 420
  421 DDDSKFDMLV RNCVAHDGKR APIQLVDQRG CVTRPKLMSR FTKIKNFGAS ASVLSYAHFQ 480
  481 AFKFPDSMEV HFQCTIQICR YHCPEQCSAE TNLQDVHHLQ VGPESQYGPP PQLHVDAYHV 540
  541 ASAIGKRRDE RRVQRRARAV AEPQVGLNRI IKVVSSGDLT FAIDDQAGGN GSSTNGANSG 600
  601 VDRSPQTMVF PLREEGQICM TTPGFAITLI VLLGILVTSC LTSAVLYVRL RPFSSFAGSA 660
  661 KERAVAFTNP QLAPLPVIQL PSPADLQGTL SKKRAMS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle